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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr10 | genome | chr10:137709..141541 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO10G00400.1 vs.
Match: CBN78164.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 461.8 bits (1187), Expect = 3.000e-126 Identity = 255/555 (45.95%), Postives = 336/555 (60.54%), Query Frame = 0
Query: 32 EDLGKTVDEDNNGIMEVPHSLCMACGESGTTRMILTKIPFFREVIVSSFECDSCGWCNNEVQFGGELREQGCRFELKVTEPADLNRQVIKSDSGKILIPELELEIPSKTQRGSVNTIEGVLQATIDGLQAEQPHRREHQPEVAAKVDEYIQRLALTMAGDKSTLPFTFILDDPAGNSYVENPKAPSLDPRLRVTFYDRTPTQDMEIGLQPTQESRAEGRVDDSRPEHKGRAPKAFEGIDRLLAVGRKGGAETKEEEEKEEAKTEEEEGTEHLGRKEAIVFQQACPNCHRMGEAVNCVTDIPYFKEVLIMAFTCSECGYRNNEIKGGGAIPPHGTLVRLRVESKDDFSREVLKSDTAGVRIPEIDLEVTQGSLGGFFTSVEGLLDKLRQHLKEGNPFGTGDSATKHHAEEDEGEEGGKEPTETEKEDGSLQKRFRDFMGHLDDFAEGRQFPFTLELHDPLGNSFI-SFQGTSPEADARLTTEPYTRSWDDDEHLGLHDMATEDYETGYEG--------------SGGTGALQSTLQTRPHVHGGDHPTQFTRGCED 572
ED G ++ G E+ S+CM CG GTTRM+ TKIPFFREVI+SSFECD C W NNEV FGGEL+E+GC FEL V DLNRQVIKSD + E+E +IP + QRG V T+EG+L+ + L Q R E PEV A++ I RLAL G S LPFT ++DDP+GNS+VENP AP+ DP L+ + + RT QDM +GLQP+ E+ A G VD S AP+ EG L+A G + + K EEEEG + R+EA+ CP C G ++ C+ +IP+FKEV+IMAF C CG++++E+KGGGAIPP GT L SKDDF R+VLKSDTA + IP+++L + G+LG +T+VEGLL+K R L EGNPF +GDSAT HH +E + +Q++FR F+ G PFTL + DPLGNSFI S + +P D ++T E + R+++++E LGL+DM T+D+ET EG G G + PH G DHPT FT+G E+
Sbjct: 37 EDAG--AGDEFAGADEITGSMCMVCGGDGTTRMLTTKIPFFREVILSSFECDDCHWRNNEVVFGGELQEKGCIFELTVNNAEDLNRQVIKSDFATVTFREMEFQIPPR-QRGEVTTVEGLLRTAAEKLGEAQDLRMERSPEVGAQIAGVIARLALMSTGIDSELPFTMVVDDPSGNSFVENPSAPNKDPALKTSHFTRTAQQDMSLGLQPSNEALAAGTVDASSAARP--APREMEGTAALMARIMSKGVGASQGDGK---AGEEEEGGSFM-RREAVRLPDCCPACGAPGHSLTCLAEIPHFKEVVIMAFNCESCGFKSSEVKGGGAIPPKGTAYTLEAVSKDDFRRDVLKSDTAVLEIPQLELVMEMGTLGSMYTTVEGLLEKARTSLVEGNPFFSGDSATAHHGKESD-----------------VQRKFRIFLERFGALIAGESLPFTLVVRDPLGNSFIGSSEHENPADDPQMTVEWFERTFEENEELGLNDMNTDDFETLPEGYVRPPVAQPGSSGAPGQEGGGEGATHLIPHRVGTDHPTAFTKGQEE 565
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO10G00400.1 ID=NO10G00400.1|Name=NO10G00400.1|organism=Nannochloropsis oceanica|type=mRNA|length=1996bp AACCACAGGATCGCAAGGCAACTAATTTTTGGTCAACAAAAAACCCGGCA AAGGCAAGCCACCACTGAAGGCAGCACATGAGTGCCTCCTCACTGGCCCC CCCTGACACCACCACCACCTTGCAGAAGGAGGAACAGCAGCCGCACCAGC AGGGCAAACCTTTGGTGCTTGAGGACTTAGGCAAGACGGTGGACGAAGAC AACAATGGCATCATGGAAGTGCCCCACAGCCTGTGCATGGCTTGCGGAGA GTCGGGAACGACGAGGATGATATTGACAAAGATTCCGTTTTTCCGCGAAG TGATTGTGTCGTCGTTTGAATGTGATTCATGCGGGTGGTGTAATAACGAG GTGCAGTTTGGAGGGGAGCTGAGGGAGCAAGGGTGTCGGTTCGAGTTGAA GGTGACCGAGCCCGCAGATCTCAACCGACAGGTTATCAAGAGCGACTCCG GCAAGATTTTGATTCCGGAACTGGAGCTGGAGATTCCATCCAAGACGCAG AGGGGGAGTGTCAATACAATCGAGGGTGTGCTGCAAGCGACCATTGACGG CCTCCAAGCGGAACAGCCCCACCGACGTGAACACCAGCCGGAAGTCGCAG CAAAGGTGGATGAGTACATCCAACGCCTGGCCCTTACCATGGCAGGGGAC AAGAGCACCCTCCCCTTCACCTTCATTCTCGACGACCCAGCCGGGAACAG CTACGTGGAGAATCCGAAAGCGCCTTCGCTGGATCCGCGTCTCAGGGTTA CTTTTTACGACCGGACTCCGACTCAGGACATGGAAATCGGCTTGCAGCCC ACACAGGAGTCAAGAGCAGAGGGTCGGGTTGATGATTCTCGTCCCGAGCA CAAGGGACGGGCCCCCAAAGCCTTTGAAGGCATTGATCGCCTGCTAGCAG TGGGGAGGAAAGGGGGCGCGGAGACGAAGGAGGAAGAGGAGAAGGAGGAG GCGAAGACAGAGGAGGAGGAGGGAACGGAGCACCTGGGGAGAAAGGAGGC CATAGTCTTCCAGCAGGCCTGCCCCAACTGCCACCGGATGGGAGAAGCCG TTAACTGCGTAACGGACATTCCTTACTTTAAGGAGGTTCTCATCATGGCG TTCACCTGCTCTGAATGCGGCTATAGAAACAATGAGATCAAGGGCGGTGG CGCCATCCCTCCCCACGGGACTCTAGTTCGTCTGCGCGTTGAGAGCAAGG ACGACTTTTCCCGTGAAGTTTTGAAGAGCGACACGGCCGGCGTTCGAATT CCCGAGATCGACTTGGAGGTTACGCAGGGCTCTCTCGGCGGATTCTTCAC TTCCGTGGAAGGGCTCTTGGACAAGCTCCGACAGCACTTGAAGGAAGGCA ATCCCTTCGGCACGGGCGACTCCGCCACCAAACACCATGCAGAGGAGGAT GAAGGGGAGGAGGGAGGAAAGGAGCCGACGGAGACGGAAAAGGAGGATGG ATCACTCCAGAAACGCTTCCGTGACTTTATGGGCCACCTGGACGACTTTG CGGAAGGCCGTCAGTTCCCCTTTACTCTAGAATTGCACGATCCGTTAGGG AATAGCTTTATCTCTTTCCAAGGCACCAGCCCCGAGGCGGACGCCCGCCT GACCACCGAGCCGTATACTCGCTCTTGGGACGACGACGAACACCTCGGCC TGCATGACATGGCGACGGAGGACTACGAGACAGGTTACGAAGGAAGTGGT GGCACAGGCGCCTTGCAGAGCACGCTGCAGACACGCCCGCACGTGCATGG GGGGGATCACCCCACGCAGTTTACCCGGGGGTGTGAAGATGGGCCGAAGG AGCAACAGCAGTAGTAGCAGCAGCAGCAGCAGCAGCTTGAGAGGTGAAAG GTGGTCGGTAAGAAAAGGAAGAGAGGGAGGGGGTTCTTCTACAAGTAAAA GGAATGAAAGCAGAGGCCAAAGTCCGGCAATCATTCCATGAAGAAAGGGA AAAGATCGATTAAAAATAAAAAGAAGAGGAAAAACGTTACTTCCGA back to topprotein sequence of NO10G00400.1 >NO10G00400.1-protein ID=NO10G00400.1-protein|Name=NO10G00400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=579bp MSASSLAPPDTTTTLQKEEQQPHQQGKPLVLEDLGKTVDEDNNGIMEVPH SLCMACGESGTTRMILTKIPFFREVIVSSFECDSCGWCNNEVQFGGELRE QGCRFELKVTEPADLNRQVIKSDSGKILIPELELEIPSKTQRGSVNTIEG VLQATIDGLQAEQPHRREHQPEVAAKVDEYIQRLALTMAGDKSTLPFTFI LDDPAGNSYVENPKAPSLDPRLRVTFYDRTPTQDMEIGLQPTQESRAEGR VDDSRPEHKGRAPKAFEGIDRLLAVGRKGGAETKEEEEKEEAKTEEEEGT EHLGRKEAIVFQQACPNCHRMGEAVNCVTDIPYFKEVLIMAFTCSECGYR NNEIKGGGAIPPHGTLVRLRVESKDDFSREVLKSDTAGVRIPEIDLEVTQ GSLGGFFTSVEGLLDKLRQHLKEGNPFGTGDSATKHHAEEDEGEEGGKEP TETEKEDGSLQKRFRDFMGHLDDFAEGRQFPFTLELHDPLGNSFISFQGT SPEADARLTTEPYTRSWDDDEHLGLHDMATEDYETGYEGSGGTGALQSTL QTRPHVHGGDHPTQFTRGCEDGPKEQQQ* back to topmRNA from alignment at chr10:137709..141541- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO10G00400.1 ID=NO10G00400.1|Name=NO10G00400.1|organism=Nannochloropsis oceanica|type=mRNA|length=3833bp|location=Sequence derived from alignment at chr10:137709..141541- (Nannochloropsis oceanica) AACCACAGGATCGCAAGGCAACTAATTTTTGGTCAACAAAAAACCCGGCA
AAGGCAAGCCACCACTGAAGGCAGCACATGAGTGCCTCCTCACTGGCCCC
CCCTGACACCACCACCACCTTGCAGAAGGAGGAACAGCAGCCGCACCAGC
AGGGCAAACCTTTGGTGCTTGAGGACTTAGGCAAGACGGTGGACGAAGAC
AACAATGGTAGGTGTGTGAGTTGTTTGATGGTTGGGCATCACTAGGTGGG
GAGGTCCGAACGTCCCCTCCTGACTCGTGGCTCTCTAACTACGCCCGCCC
TTACTCCCTCCATCCTTTCCACGGCTGGCATCCTTTCCACATTTACCGCA
CAAACAGCGTGAGATTTTCCACTTGAACTCACATCCCTCCCCTACCCTCC
CTATCATTTTTCTTCCCCCCCTCGCTGTAGGCATCATGGAAGTGCCCCAC
AGCCTGTGCATGGCTTGCGGAGAGTCGGGAACGACGAGGATGATATTGAC
AAAGATTCCGTTTTTCCGCGAAGTGATTGTGTCGTCGTTTGAATGTGATT
CATGCGGGTGGTGTAATAACGAGGTGCAGTTTGGAGGGGAGCTGAGGGAG
CAAGGGTGTCGGTTCGAGTTGAAGGTAGGAATTTTGAGAGGAAGAGAGGG
GGGAAGGGGAAAGGGAGAGGGAAGTAAAGAGAAAAGAAGTGTTAGTGTGG
GAAATCATGGCCTCAATACTTTGACATGCATGCTCACAGGTGACCGAGCC
CGCAGATCTCAACCGACAGGTACGCCCTCCACCTCCCTCCCTCCCTCTCT
CCCTCTCTCCCTCCCTCCCGCAACCTCCTTCTCGTTTTTCTACCCGTCCT
CGCTCCCCTCCTTAGGTTATCAAGAGCGACTCCGGCAAGATTTTGATTCC
GGAACTGGAGCTGGAGATTCCATCCAAGACGCAGAGGGGGAGTGTCAATA
CAATCGGTGAGGAGGGAGGGAGAGGGAGGAAGGGAGGTAGTCTAAGACAA
AGAGGAAGAGATGCATTAATGTTGTTTTTTCTCTTAACACTTGCATGACC
TATGTAGTTGTTCTTACTCTCTTTCCTCCCACCCATTGCACGCTCGGTTT
CCCTCCTTCCCTTCCTCCCTCCCTCCTTTCCTTCCTTCCTCCCTCCTTTC
CTTCCAGAGGGTGTGCTGCAAGCGACCATTGACGGCCTCCAAGCGGAACA
GCCCCACCGACGTGAACACCAGCCGGAAGTCGCAGCAAAGGTAACTTGAA
GGGGGGGGGGAGGGTAGGAGGGAGGAACGGCGGAGAGAGGATGTTCAACG
AGAGGGTGCCCTCGGAACACATCAATCACTCTGATGCAAGACTGATGTAG
ACACCTCTCTTCTCCCCTTCCTCCCTTTGACGATCACTTAATTCAAAGGT
GGATGAGTACATCCAACGCCTGGCCCTTACCATGGCAGGGGACAAGAGCA
CCCTCCCCTTCACCTTCATTCTCGACGACCCAGCCGGGAACAGCTACGTG
GAGAATCCGAAAGCGCCTTCGCTGGATCCGCGTCTCAGGGTTACTTTTTA
CGACCGGACTCCGACTCAGGTAGGTAGGTAGGGACGGAGGGAGGGAAGGG
GGGGTGGGCGGCTTGTGTTGGCGCGATCCCTCATATCTCTTTGTTTCCCC
TCTTCCCCCTTCAGGACATGGAAATCGGCTTGCAGCCCACACAGGAGTCA
AGAGCAGAGGGTCGGGTTGATGATTCTCGTCCCGAGCACAAGGGACGGGC
CCCCAAAGCCTTTGAAGGCATTGATCGCCTGCTAGCAGTGGGGAGGAAAG
GGGGCGCGGAGACGAAGGAGGAAGAGGAGAAGGAGGAGGCGAAGACAGAG
GAGGAGGAGGGAACGGAGCACCTGGGGAGAAAGGAGGCCATAGTCTTCCA
GCAGGTGAGTGGGTGGGGAGTGACAAGGCAGCGGACACCAGCAATTTGTA
GATAGACATAAATTAGAAGATACTAAGGATAGGCAAATATCAATGATGTA
GAGATATTAAGGATAAATAAAGAGTAATAAGGGGAAGATTCGCGCACTTT
CTCTTTTCTTTCCCCTTACACTAGGATGTCACACGCTTCTTCTTTTCTTC
TTCCCTCCCTCTAGGCCTGCCCCAACTGCCACCGGATGGGAGAAGCCGTT
AACTGCGTAACGGACATTCCTTACTTTAAGGAGGTTCTCATCATGGCGTT
CACCTGCTCTGAATGCGGCTATAGAAACAATGAGATCAAGGTACATATTT
GCGTGTCTCATCTCCCTTCTTCGCTTCTTCCATTGCTCGCTCCCTCTCTT
CCTCCCTCTATCCCACCTTTGATTCGAAGCGATACTTATCGCTGCCCTAT
TTCATCCTCCCCCTCCCTATTCCTTCCCAGGGCGGTGGCGCCATCCCTCC
CCACGGGACTCTAGTTCGTCTGCGCGTTGAGAGCAAGGACGACTTTTCCC
GTGAAGTTTTGAAGAGCGACACGGCCGGCGTTCGAATTCCCGAGATCGAC
TTGGAGGTTACGCAGGTACCAGGTTTTGCCGTCCCTCCATCCCTCCCTCC
TCATCAATTGCCCCTTCTATTCCCTTGTTTTGGATGTTGAGTCTCTCTCT
TTGCCTCTTTTCTCCTACTTGCCTCCCACAGGGCTCTCTCGGCGGATTCT
TCACTTCCGTGGAAGGGCTCTTGGACAAGCTCCGACAGCACTTGAAGGAA
GGCAATCCCTTCGGCACGGGCGACTCCGCCACCAAACACCATGCAGAGGA
GGATGAAGGGGAGGAGGGAGGAAAGGAGCCGACGGAGACGGAAAAGGAGG
ATGGATCACTCCAGAAACGGTAAGGGATTCGAGAAAGATGAGGGAGGGGG
GGGAATGAAAGGGTTCAAAAGTCAAAGACTTTCTCGTGGGCGCTCCGAAA
GGCACTGCGGCGACTAAGGCACTGCGACGACTATATCCACTTTTTGATGA
CCCTCTCCTTTGCCTCCCTCCCTCCCTTTTCAGCTTCCGTGACTTTATGG
GCCACCTGGACGACTTTGCGGAAGGCCGTCAGTTCCCCTTTACTCTAGAA
TTGCACGATCCGTTAGGGAATAGCTTTATCTCTTTCCAAGGCACCAGGTA
GAGAAGAAGGGAAGGACGGGAGGAGTGAATGAGTGGACGATGCTACGAGA
TTTTCAGTCACGGGCGACGTAGTGTCTGTCTCTGTCTATCGATTTCCTTA
TTCTTTCTTTTCATTTGTTTCCGGTAGCCCCGAGGCGGACGCCCGCCTGA
CCACCGAGCCGTATACTCGCTCTTGGGACGACGACGAACACCTCGGCCTG
CATGACATGGCGGTAGGTGCTTGTGGGAACATGCCACCTCTCTATCCCTC
CGTTTTGCTGCCCTGTGATTTCTTCCTTTCTGGCAGATGTAGGAGCAGTG
GTCGATAGTTGTTGCCTATACACCTTCTCGCCCTCGCACCTCTTACCTTT
CTAGTTCTTTTCACCCTCGCTTTTCAATCTCCGAACCTGCGTCCTCAATA
GACGGAGGACTACGAGACAGGTTACGAAGGAAGTGGTGGCACAGGCGCCT
TGCAGAGCACGCTGCAGACACGCCCGCACGTGCATGGGGGGGATCACCCC
ACGCAGTTTACCCGGGGGTGTGAAGATGGGCCGAAGGAGCAACAGCAGTA
GTAGCAGCAGCAGCAGCAGCAGCTTGAGAGGTGAAAGGTGGTCGGTAAGA
AAAGGAAGAGAGGGAGGGGGTTCTTCTACAAGTAAAAGGAATGAAAGCAG
AGGCCAAAGTCCGGCAATCATTCCATGAAGAAAGGGAAAAGATCGATTAA
AAATAAAAAGAAGAGGAAAAACGTTACTTCCGA back to topCoding sequence (CDS) from alignment at chr10:137709..141541- >NO10G00400.1 ID=NO10G00400.1|Name=NO10G00400.1|organism=Nannochloropsis oceanica|type=CDS|length=1737bp|location=Sequence derived from alignment at chr10:137709..141541- (Nannochloropsis oceanica) ATGAGTGCCTCCTCACTGGCCCCCCCTGACACCACCACCACCTTGCAGAA GGAGGAACAGCAGCCGCACCAGCAGGGCAAACCTTTGGTGCTTGAGGACT TAGGCAAGACGGTGGACGAAGACAACAATGGCATCATGGAAGTGCCCCAC AGCCTGTGCATGGCTTGCGGAGAGTCGGGAACGACGAGGATGATATTGAC AAAGATTCCGTTTTTCCGCGAAGTGATTGTGTCGTCGTTTGAATGTGATT CATGCGGGTGGTGTAATAACGAGGTGCAGTTTGGAGGGGAGCTGAGGGAG CAAGGGTGTCGGTTCGAGTTGAAGGTGACCGAGCCCGCAGATCTCAACCG ACAGGTTATCAAGAGCGACTCCGGCAAGATTTTGATTCCGGAACTGGAGC TGGAGATTCCATCCAAGACGCAGAGGGGGAGTGTCAATACAATCGAGGGT GTGCTGCAAGCGACCATTGACGGCCTCCAAGCGGAACAGCCCCACCGACG TGAACACCAGCCGGAAGTCGCAGCAAAGGTGGATGAGTACATCCAACGCC TGGCCCTTACCATGGCAGGGGACAAGAGCACCCTCCCCTTCACCTTCATT CTCGACGACCCAGCCGGGAACAGCTACGTGGAGAATCCGAAAGCGCCTTC GCTGGATCCGCGTCTCAGGGTTACTTTTTACGACCGGACTCCGACTCAGG ACATGGAAATCGGCTTGCAGCCCACACAGGAGTCAAGAGCAGAGGGTCGG GTTGATGATTCTCGTCCCGAGCACAAGGGACGGGCCCCCAAAGCCTTTGA AGGCATTGATCGCCTGCTAGCAGTGGGGAGGAAAGGGGGCGCGGAGACGA AGGAGGAAGAGGAGAAGGAGGAGGCGAAGACAGAGGAGGAGGAGGGAACG GAGCACCTGGGGAGAAAGGAGGCCATAGTCTTCCAGCAGGCCTGCCCCAA CTGCCACCGGATGGGAGAAGCCGTTAACTGCGTAACGGACATTCCTTACT TTAAGGAGGTTCTCATCATGGCGTTCACCTGCTCTGAATGCGGCTATAGA AACAATGAGATCAAGGGCGGTGGCGCCATCCCTCCCCACGGGACTCTAGT TCGTCTGCGCGTTGAGAGCAAGGACGACTTTTCCCGTGAAGTTTTGAAGA GCGACACGGCCGGCGTTCGAATTCCCGAGATCGACTTGGAGGTTACGCAG GGCTCTCTCGGCGGATTCTTCACTTCCGTGGAAGGGCTCTTGGACAAGCT CCGACAGCACTTGAAGGAAGGCAATCCCTTCGGCACGGGCGACTCCGCCA CCAAACACCATGCAGAGGAGGATGAAGGGGAGGAGGGAGGAAAGGAGCCG ACGGAGACGGAAAAGGAGGATGGATCACTCCAGAAACGCTTCCGTGACTT TATGGGCCACCTGGACGACTTTGCGGAAGGCCGTCAGTTCCCCTTTACTC TAGAATTGCACGATCCGTTAGGGAATAGCTTTATCTCTTTCCAAGGCACC AGCCCCGAGGCGGACGCCCGCCTGACCACCGAGCCGTATACTCGCTCTTG GGACGACGACGAACACCTCGGCCTGCATGACATGGCGACGGAGGACTACG AGACAGGTTACGAAGGAAGTGGTGGCACAGGCGCCTTGCAGAGCACGCTG CAGACACGCCCGCACGTGCATGGGGGGGATCACCCCACGCAGTTTACCCG GGGGTGTGAAGATGGGCCGAAGGAGCAACAGCAGTAG back to top
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