NO10G00050.1, NO10G00050.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G00050.1
Unique NameNO10G00050.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length279
Alignment locationchr10:17780..18247 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:17780..18247 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO10G00050.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G00050NO10G00050Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G00050.1NO10G00050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G00050.1.cds1NO10G00050.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00050.1.cds2NO10G00050.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G00050.1 ID=NO10G00050.1|Name=NO10G00050.1|organism=Nannochloropsis oceanica|type=mRNA|length=279bp
ATGAATCGGGGCCTGAGTAATCGCGTTGTCGACTGCGAATATCATATCCA
TCGTCAGAGCAGCAACAGCAACAGCGGCAGTAGTGACAATAGCAGCAGTA
AATTGTATGGAGGAGGGGAATCAAGGCAGTTTGAGGAACCCTTTAGGCGT
CATGCCTTGCCTGGTCGTGCCATACGCAGGAGCCTACATGCACGGGCCTA
CCCCCGTCATCCTTCCACCACCAAGGGCAGCAGGGCCACGGGTCCAAATA
ACCGTGATCCATCGATAAAAACCATTTAA
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protein sequence of NO10G00050.1

>NO10G00050.1-protein ID=NO10G00050.1-protein|Name=NO10G00050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=93bp
MNRGLSNRVVDCEYHIHRQSSNSNSGSSDNSSSKLYGGGESRQFEEPFRR
HALPGRAIRRSLHARAYPRHPSTTKGSRATGPNNRDPSIKTI*
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mRNA from alignment at chr10:17780..18247-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G00050.1 ID=NO10G00050.1|Name=NO10G00050.1|organism=Nannochloropsis oceanica|type=mRNA|length=468bp|location=Sequence derived from alignment at chr10:17780..18247- (Nannochloropsis oceanica)
ATGAATCGGGGCCTGAGTAATCGCGTTGTCGACTGCGAATATCATATCCA
TCGTCAGAGCAGCAACAGCAACAGCGGCAGTAGTGACAATAGCAGCAGTA
AATTGTATGGAGGAGGGGAATCAAGGCAGTTTGAGGAACCCTTTAGGCGT
CATGCCTTGCCTGGTAGGTGAGGAAAGCGTGCTCTCCCAAAGGGCCAGGG
TAGGGTTGGTCAAACATGATGTCCATGGCAGACAAGGATGGCCAGTGATT
GGTCAAGGAAGGCCACGAGAGAGCGCATCACTTCCCTTGCCTCCCATCGA
CATCCTATCTGATCAGCCCTGCTCTGTCATATTTGCCCTCGCCCTTACAT
AGGTCGTGCCATACGCAGGAGCCTACATGCACGGGCCTACCCCCGTCATC
CTTCCACCACCAAGGGCAGCAGGGCCACGGGTCCAAATAACCGTGATCCA
TCGATAAAAACCATTTAA
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Coding sequence (CDS) from alignment at chr10:17780..18247-

>NO10G00050.1 ID=NO10G00050.1|Name=NO10G00050.1|organism=Nannochloropsis oceanica|type=CDS|length=279bp|location=Sequence derived from alignment at chr10:17780..18247- (Nannochloropsis oceanica)
ATGAATCGGGGCCTGAGTAATCGCGTTGTCGACTGCGAATATCATATCCA
TCGTCAGAGCAGCAACAGCAACAGCGGCAGTAGTGACAATAGCAGCAGTA
AATTGTATGGAGGAGGGGAATCAAGGCAGTTTGAGGAACCCTTTAGGCGT
CATGCCTTGCCTGGTCGTGCCATACGCAGGAGCCTACATGCACGGGCCTA
CCCCCGTCATCCTTCCACCACCAAGGGCAGCAGGGCCACGGGTCCAAATA
ACCGTGATCCATCGATAAAAACCATTTAA
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Synonyms
Publications