NO09G04100.1, NO09G04100.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G04100.1
Unique NameNO09G04100.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1927
Alignment locationchr9:1211835..1213866 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1211835..1213866 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G04100.1 vs.
Match: CDB53301.1 (putative uncharacterized protein [Azospirillum sp. CAG:239])

HSP 1 Score: 137.9 bits (346), Expect = 7.200e-29
Identity = 93/284 (32.75%), Postives = 150/284 (52.82%), Query Frame = 0 
Query:  128 ALKANLRSLRQCPKGLVVCAVVKNEAAYIQEWLTFHLHSGVEHFYLYFNEDEEDTLAVVQPFVDAGIVTTENIEGEGVQGLVYNKCLGNVKVNRPSAKWISFQDVDEYLFRVNQECMMELLESLHDHAALAVNWRLYSYSNHVLQLPRELLLMETNVHTL-----GVDRHVKSVVHVDHTLSCNHPHFCLYESGQHAKDEVGRPVEGPFNDDIPSPQQLRMHHYHKRTLQDFLMKRFRGRADLQVTEFDLSALANQVRQDFMNSHVDEDVESIKFMFDPVRALL 407
            A K  L  +++ P  L + A++KNEA YI+EW+ F+  +GVE FYLY NE E++   V+  FV AGIV   N  G+  Q   YN  L  +   R   +W+   D DE++     + + E L+    +AALAVNW +Y Y   +L+ P  L+L   N  T+       + HVKSV++      C +PH+C Y+ G +A +E    V GP    + S  ++R++HY+ ++ +++  K  RG AD    ++ +       ++D+      ED  + +F   PVR+L+
Sbjct:  114 AAKLGLPGVKK-PAYLSLAAIIKNEAPYIREWVCFYYLNGVEKFYLYDNESEDNLREVLSDFVSAGIVEIINCPGKAKQVPAYNDALSRL---RYKTQWLMIVDADEFMIVNGNKKISEFLKDYEKYAALAVNWVMYDYGG-LLKKPEGLVL--ENYRTVHGKFHPKNLHVKSVINPRKVALCVNPHYCEYKGGNYAVNENFEKVVGPVT-AVQSIDKIRLNHYYCKSYEEYEAKVARGLAD-SYFKYTIK------KEDYAFDDATEDYVAGRFA-GPVRSLM 381
The following BLAST results are available for this feature:
BLAST of NO09G04100.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CDB53301.17.200e-2932.75putative uncharacterized protein [Azospirillum sp.... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G04100NO09G04100Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G04100.1NO09G04100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G04100.1.cds1NO09G04100.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G04100.1.cds2NO09G04100.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G04100.1 ID=NO09G04100.1|Name=NO09G04100.1|organism=Nannochloropsis oceanica|type=mRNA|length=1927bp
TGACACTGCTGAGCTGAACAGCAGTCATCACCTATTTTTTTTCCTTAGAG
GGCTAGGAGTCGTGTACACATGACTTTTTGAGCGCCGAATCTCCCATATA
TCCTATTAACACCAATCAGACACATATATCAGTACGTCTAAACACCCAAA
AGATCATCTGAAGGTGACATGCAGTGGCTGAAAAGGTTATCACTGTATAA
TTTGGCAAGGTATGGACACTTCTCTTCCATTGCTAGTGACGAAACTTTTG
CTAAAAGCTAATGCCATCCAAATAGCTTGTCTTTCTTGCTTCTAGCCGGC
TATATCTGGAGTTGGACCGTCAAAATATGGCCATCTCCATTATTAACTAC
TGTTTTCCCCATGAAGTGGCCCACCGGAGGAAAAGGCAGTGCCTCTGTCT
GGACGGGCAACTCACCAGTGCAGTGCCAGATGCAGTATTCTGTTGTATCT
ACGCATACTATGAGCGACAGCGATATTTACCAGATCCTCTACCGTAGCTT
TGATTGTCTTGTACAGCAAATCGTCATGCCCGCTATACGTGGCCGGAGTC
AGCGAAAATTGCGCAGCTTTCAACGCCCAGGCTGCAACAGCGGGAATCTG
GCTGACTTTGGAACTACCCAGACAGAGGGATGGCGGGCGCTGGCGGAGAG
ATACTGGTGTATTTTGGAGGAGCAACTGTACCCAGCGGTGATTTCAAGCC
GCCTTAGCCAGCAGAGAGGCATGTATATCAACTCGAGCAGGGCGCTAAAG
GCGAATTTACGTTCTCTACGGCAGTGCCCCAAGGGTCTAGTTGTCTGCGC
AGTGGTGAAAAACGAAGCGGCCTACATCCAGGAGTGGCTGACCTTCCACC
TTCATAGCGGTGTGGAGCACTTCTATCTGTACTTCAATGAAGACGAGGAA
GATACACTTGCGGTGGTGCAACCGTTTGTGGACGCAGGGATTGTGACAAC
GGAGAATATAGAAGGGGAGGGCGTCCAGGGGTTGGTCTATAACAAATGCC
TCGGCAACGTCAAGGTCAACCGGCCGAGTGCCAAGTGGATTTCTTTTCAG
GACGTAGATGAATATCTATTTCGTGTAAACCAGGAGTGTATGATGGAATT
GCTGGAATCCTTGCACGACCATGCGGCACTGGCCGTAAACTGGCGTCTCT
ACTCGTATTCGAACCACGTATTGCAGCTGCCGCGGGAGCTGCTGTTGATG
GAGACTAATGTGCACACGCTCGGCGTAGACCGTCATGTTAAGAGTGTGGT
ACACGTGGATCACACCTTGAGCTGCAACCACCCCCATTTTTGTTTATATG
AGTCGGGACAACATGCCAAGGACGAAGTGGGCCGCCCGGTAGAAGGCCCT
TTCAACGATGACATCCCCTCCCCTCAGCAACTCCGCATGCACCACTATCA
CAAGCGTACTCTTCAGGACTTTCTTATGAAGCGTTTTAGGGGGCGGGCAG
ACCTACAAGTGACCGAGTTTGATTTGTCAGCATTGGCAAACCAAGTTAGA
CAAGACTTTATGAACTCACATGTGGATGAAGACGTGGAGTCTATCAAGTT
TATGTTCGACCCTGTTCGGGCTCTTTTGGGTCTTCCGATGACCAAAGACA
AATGATGGAATGGATAGGAGATTGCTTTTGCTTGTCTGCCTGCTATGAAG
ATGGTGTTTCTTGAAGAATAAGGGAAAGGTAGGGCGATGACGTCGCAAAA
CCGGCAAGTAGGACTGTGCAGGGGTGTGAACGAGAGGAATGAAAGAATAG
GGCCGTACGTAGTATCGCCGATACTCCTATTAGCTATGGGGGAAAAAACA
CTTTTAGCAAAAAGACCTGAGTGAGGCGTATGAAACGAGGTCATGCTGGT
ATTTGTTTACACTTACGCATAAGTCACGCAATTTGCAGAAAATAAATCAC
CGTATGAAGCTGCATGGGATACCACAA
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protein sequence of NO09G04100.1

>NO09G04100.1-protein ID=NO09G04100.1-protein|Name=NO09G04100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=415bp
MKWPTGGKGSASVWTGNSPVQCQMQYSVVSTHTMSDSDIYQILYRSFDCL
VQQIVMPAIRGRSQRKLRSFQRPGCNSGNLADFGTTQTEGWRALAERYWC
ILEEQLYPAVISSRLSQQRGMYINSSRALKANLRSLRQCPKGLVVCAVVK
NEAAYIQEWLTFHLHSGVEHFYLYFNEDEEDTLAVVQPFVDAGIVTTENI
EGEGVQGLVYNKCLGNVKVNRPSAKWISFQDVDEYLFRVNQECMMELLES
LHDHAALAVNWRLYSYSNHVLQLPRELLLMETNVHTLGVDRHVKSVVHVD
HTLSCNHPHFCLYESGQHAKDEVGRPVEGPFNDDIPSPQQLRMHHYHKRT
LQDFLMKRFRGRADLQVTEFDLSALANQVRQDFMNSHVDEDVESIKFMFD
PVRALLGLPMTKDK*
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mRNA from alignment at chr9:1211835..1213866+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G04100.1 ID=NO09G04100.1|Name=NO09G04100.1|organism=Nannochloropsis oceanica|type=mRNA|length=2032bp|location=Sequence derived from alignment at chr9:1211835..1213866+ (Nannochloropsis oceanica)
TGACACTGCTGAGCTGAACAGCAGTCATCACCTATTTTTTTTCCTTAGAG
GGCTAGGAGTCGTGTACACATGACTTTTTGAGCGCCGAATCTCCCATATA
TCCTATTAACACCAATCAGACACATATATCAGTACGTCTAAACACCCAAA
AGATCATCTGAAGGTGACATGCAGTGGCTGAAAAGGTTATCACTGTATAA
TTTGGCAAGGTATGGACACTTCTCTTCCATTGCTAGTGACGAAACTTTTG
CTAAAAGCTAATGCCATCCAAATAGCTTGTCTTTCTTGCTTCTAGCCGGC
TATATCTGGAGTTGGACCGTCAAAATATGGCCATCTCCATTATTAACTAC
TGTTTTCCCCATGAAGTGGCCCACCGGAGGAAAAGGCAGTGCCTCTGTCT
GGACGGGCAACTCACCAGTGCAGTGCCAGATGCAGTATTCTGTTGTATCT
ACGCATACTATGAGCGACAGCGATATTTACCAGATCCTCTACCGTAGCTT
TGATTGTCTTGTACAGCAAATCGTCATGCCCGCTATACGTGGCCGGAGTC
AGCGAAAATTGCGCAGCTTTCAACGCCCAGGCTGCAACAGCGGGAATCTG
GCTGACTTTGGAACTACCCAGACAGAGGGATGGCGGGCGCTGGCGGAGAG
ATACTGGTGTATTTTGGAGGAGCAACTGTACCCAGCGGTGATTTCAAGCC
GCCTTAGCCAGCAGAGAGGCATGTATATCAACTCGAGCAGGTAAAGTCCG
TATGAAGACGTGTAATTCTGAGGACAAGAGTGTCCACAGGCGCGAAAAAG
TCAAACCCGACCATTTAATACTCTCTTTTTGCACTTATGCTCTAGGGCGC
TAAAGGCGAATTTACGTTCTCTACGGCAGTGCCCCAAGGGTCTAGTTGTC
TGCGCAGTGGTGAAAAACGAAGCGGCCTACATCCAGGAGTGGCTGACCTT
CCACCTTCATAGCGGTGTGGAGCACTTCTATCTGTACTTCAATGAAGACG
AGGAAGATACACTTGCGGTGGTGCAACCGTTTGTGGACGCAGGGATTGTG
ACAACGGAGAATATAGAAGGGGAGGGCGTCCAGGGGTTGGTCTATAACAA
ATGCCTCGGCAACGTCAAGGTCAACCGGCCGAGTGCCAAGTGGATTTCTT
TTCAGGACGTAGATGAATATCTATTTCGTGTAAACCAGGAGTGTATGATG
GAATTGCTGGAATCCTTGCACGACCATGCGGCACTGGCCGTAAACTGGCG
TCTCTACTCGTATTCGAACCACGTATTGCAGCTGCCGCGGGAGCTGCTGT
TGATGGAGACTAATGTGCACACGCTCGGCGTAGACCGTCATGTTAAGAGT
GTGGTACACGTGGATCACACCTTGAGCTGCAACCACCCCCATTTTTGTTT
ATATGAGTCGGGACAACATGCCAAGGACGAAGTGGGCCGCCCGGTAGAAG
GCCCTTTCAACGATGACATCCCCTCCCCTCAGCAACTCCGCATGCACCAC
TATCACAAGCGTACTCTTCAGGACTTTCTTATGAAGCGTTTTAGGGGGCG
GGCAGACCTACAAGTGACCGAGTTTGATTTGTCAGCATTGGCAAACCAAG
TTAGACAAGACTTTATGAACTCACATGTGGATGAAGACGTGGAGTCTATC
AAGTTTATGTTCGACCCTGTTCGGGCTCTTTTGGGTCTTCCGATGACCAA
AGACAAATGATGGAATGGATAGGAGATTGCTTTTGCTTGTCTGCCTGCTA
TGAAGATGGTGTTTCTTGAAGAATAAGGGAAAGGTAGGGCGATGACGTCG
CAAAACCGGCAAGTAGGACTGTGCAGGGGTGTGAACGAGAGGAATGAAAG
AATAGGGCCGTACGTAGTATCGCCGATACTCCTATTAGCTATGGGGGAAA
AAACACTTTTAGCAAAAAGACCTGAGTGAGGCGTATGAAACGAGGTCATG
CTGGTATTTGTTTACACTTACGCATAAGTCACGCAATTTGCAGAAAATAA
ATCACCGTATGAAGCTGCATGGGATACCACAA
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Coding sequence (CDS) from alignment at chr9:1211835..1213866+

>NO09G04100.1 ID=NO09G04100.1|Name=NO09G04100.1|organism=Nannochloropsis oceanica|type=CDS|length=1245bp|location=Sequence derived from alignment at chr9:1211835..1213866+ (Nannochloropsis oceanica)
ATGAAGTGGCCCACCGGAGGAAAAGGCAGTGCCTCTGTCTGGACGGGCAA
CTCACCAGTGCAGTGCCAGATGCAGTATTCTGTTGTATCTACGCATACTA
TGAGCGACAGCGATATTTACCAGATCCTCTACCGTAGCTTTGATTGTCTT
GTACAGCAAATCGTCATGCCCGCTATACGTGGCCGGAGTCAGCGAAAATT
GCGCAGCTTTCAACGCCCAGGCTGCAACAGCGGGAATCTGGCTGACTTTG
GAACTACCCAGACAGAGGGATGGCGGGCGCTGGCGGAGAGATACTGGTGT
ATTTTGGAGGAGCAACTGTACCCAGCGGTGATTTCAAGCCGCCTTAGCCA
GCAGAGAGGCATGTATATCAACTCGAGCAGGGCGCTAAAGGCGAATTTAC
GTTCTCTACGGCAGTGCCCCAAGGGTCTAGTTGTCTGCGCAGTGGTGAAA
AACGAAGCGGCCTACATCCAGGAGTGGCTGACCTTCCACCTTCATAGCGG
TGTGGAGCACTTCTATCTGTACTTCAATGAAGACGAGGAAGATACACTTG
CGGTGGTGCAACCGTTTGTGGACGCAGGGATTGTGACAACGGAGAATATA
GAAGGGGAGGGCGTCCAGGGGTTGGTCTATAACAAATGCCTCGGCAACGT
CAAGGTCAACCGGCCGAGTGCCAAGTGGATTTCTTTTCAGGACGTAGATG
AATATCTATTTCGTGTAAACCAGGAGTGTATGATGGAATTGCTGGAATCC
TTGCACGACCATGCGGCACTGGCCGTAAACTGGCGTCTCTACTCGTATTC
GAACCACGTATTGCAGCTGCCGCGGGAGCTGCTGTTGATGGAGACTAATG
TGCACACGCTCGGCGTAGACCGTCATGTTAAGAGTGTGGTACACGTGGAT
CACACCTTGAGCTGCAACCACCCCCATTTTTGTTTATATGAGTCGGGACA
ACATGCCAAGGACGAAGTGGGCCGCCCGGTAGAAGGCCCTTTCAACGATG
ACATCCCCTCCCCTCAGCAACTCCGCATGCACCACTATCACAAGCGTACT
CTTCAGGACTTTCTTATGAAGCGTTTTAGGGGGCGGGCAGACCTACAAGT
GACCGAGTTTGATTTGTCAGCATTGGCAAACCAAGTTAGACAAGACTTTA
TGAACTCACATGTGGATGAAGACGTGGAGTCTATCAAGTTTATGTTCGAC
CCTGTTCGGGCTCTTTTGGGTCTTCCGATGACCAAAGACAAATGA
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Synonyms
Publications