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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr9 | genome | chr9:1126238..1129756 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G03880.3 vs.
Match: EWM27416.1 (DnaJ subfamily C, member 28 [Nannochloropsis gaditana]) HSP 1 Score: 654.1 bits (1686), Expect = 4.700e-184 Identity = 352/537 (65.55%), Postives = 431/537 (80.26%), Query Frame = 0
Query: 106 MEHTTFVSHLPKQLQEYEAQLTNNSLVRDQSRLIINKNDPANRRWLSMPNLDGVGEGGYSTASYLEREALASKARLGEAQGAVYRRKAGWMGEGGREGGTGGVPEEGLSVEEKIQLSMAQGDFDDLKGKGKPLEKFDVHHYATDKTSATYMDVLAKSGVKPVWIERSLRIKEAEKRVLKRLEGEWAKVVLEIWEEEEKGKGKGGRAGGRSQWRERVLGMRCLREDLAWVNAEIDLYNLQVPSMSLQRMRLKLDHLCEAVEERVGGGGGGWTRPRQGLYYKRDKWDMNSPEVLAEALSAAEGGAISTAVLYPLEVIKTVIQASKGKKKAETKPSAASSSTWNEEQARAEEGEASPIAAAAAATVTAITLASGSAAEKE-RKGGEDAAKPLTSREVAQDIYKRAGVTGFFGGVQYASLQSALEKSIYFYAYSTMKGITKLLNGGRFGVRENLIVGYLSEVIHLPVTVPLEVIITRIITSQGRVSSWAQATKELLEENGVKGLYKGITTYGVLCLKPAIQYTVFEQLRRGIISFLSRRQG 642
MEHTTFVSHLPKQLQ+YEA+ NN LVRDQSRLII K+DPANR+WLS+P DG G+STASY ERE A KARL A+ AV+RR+ E EGGT G PEEG+SVEEKIQL+MAQGDFDDLKGKGKPLE+ + + YATDKTSATYMDVL+KSGVKPVW+ERS RI++AE+R++ RLE EWAKVVLE WE E G K G+ G ++W+ RV+G+ LRED+AW+NAEIDLYNLQVPSMSLQRMR+ L+ +C+ V+ GG G G + +R+ M SPEVLAEALSAAEGGAISTAVLYPLEVIKTVIQASK K++ +++ + +++T +EQ + EGE + AAAAA +A SG A +E +G ++ + LT+++VA++IY+RAG+ GFFGGVQY+SLQS+LEKSIYFYAYSTMKG+ K+LNGGRFGVRENL+VGYLSEV+HLPVTVP+EV++TRIITSQGR+ SW++A KE+L+E G GLYKGI YGVLCLKPAIQYT+FEQLRRGI+S LSRR+G
Sbjct: 1 MEHTTFVSHLPKQLQQYEAEQVNNPLVRDQSRLIIRKDDPANRQWLSLPEFDGGDADGHSTASYFEREVAARKARLIRAERAVFRRRV--RREEVAEGGTEGTPEEGMSVEEKIQLAMAQGDFDDLKGKGKPLERLEGYLYATDKTSATYMDVLSKSGVKPVWVERSSRIRDAERRLVHRLEAEWAKVVLETWEHGE-GAEKRGKEGAMARWKSRVVGLAGLREDVAWINAEIDLYNLQVPSMSLQRMRMTLEEVCDVVQ---GGEKEG------GTWMEREA-TMASPEVLAEALSAAEGGAISTAVLYPLEVIKTVIQASKTKEQKQSRQATTTAAT-EDEQTSSAEGERNVAAAAAAVAASAADPLSGETAPEEGDEGSDEDSSALTTQDVAKEIYRRAGLGGFFGGVQYSSLQSSLEKSIYFYAYSTMKGVVKVLNGGRFGVRENLLVGYLSEVVHLPVTVPIEVVVTRIITSQGRLKSWSEAAKEVLKEGGPSGLYKGIPAYGVLCLKPAIQYTLFEQLRRGILSLLSRRRG 523
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G03880.3 ID=NO09G03880.3|Name=NO09G03880.3|organism=Nannochloropsis oceanica|type=mRNA|length=2029bp ATGCATCACCTCCCGTGTCGCTGCAATCGGCGGGCGCGGCAAGGCTATGT TTGGTCACAAACCCTCGGAGTCTCTTCCTCTTCGACCTCCTCCCCAACAA CTACCACCACCACCACCACCGACGACGACGGGAAGGACACCGGAGGTGGC CCCACCTCCTCTAATTCCTCCTTTAGCGTCGTCGCCGCCGATGTCGCCAG CCGCCGCCCGTCGCGTCGGTTTAATGTCAGTACAAGAGGTGGGGAGGGAG GACGAGCCAAAGTGCAAGTCTTTCGAGATCTGACCCGCAACCGCGATCCC TCTTGGGAGCGGGCTATGGAGCATACAACATTCGTAAGCCACTTGCCTAA ACAGCTGCAGGAATATGAGGCGCAGCTAACGAACAACTCCTTGGTGCGGG ATCAGTCACGCTTGATCATCAATAAAAACGACCCGGCCAACAGGCGGTGG TTGAGTATGCCGAACCTGGATGGCGTGGGGGAAGGTGGATACAGTACGGC TAGCTACCTGGAGAGAGAGGCCTTGGCAAGTAAAGCCAGGCTGGGTGAAG CCCAGGGGGCGGTTTATCGGCGGAAGGCGGGGTGGATGGGGGAGGGAGGG AGGGAGGGAGGGACGGGAGGGGTGCCTGAGGAGGGGTTGAGTGTGGAAGA GAAAATTCAGTTGAGCATGGCACAGGGGGATTTTGACGATTTAAAAGGCA AGGGAAAGCCGTTGGAGAAATTCGACGTTCATCATTATGCGACGGACAAA ACCAGCGCCACCTACATGGACGTGCTAGCCAAGTCAGGCGTGAAGCCCGT GTGGATTGAGAGGTCCCTCCGGATAAAGGAGGCAGAGAAAAGGGTGTTGA AGAGATTGGAGGGAGAGTGGGCCAAGGTGGTGTTGGAGATTTGGGAAGAG GAGGAGAAGGGAAAAGGGAAGGGAGGGAGGGCGGGAGGGAGGTCACAGTG GAGGGAGAGGGTCCTGGGGATGAGGTGTTTGAGGGAGGACTTGGCCTGGG TGAATGCGGAGATTGATTTGTATAATCTACAGGTGCCCTCCATGTCCTTA CAGCGAATGAGATTAAAGCTGGACCATTTGTGTGAGGCAGTGGAGGAGCG AGTGGGGGGAGGGGGGGGTGGATGGACAAGACCACGGCAAGGGCTGTACT ACAAGAGAGACAAGTGGGACATGAACTCCCCGGAGGTGCTGGCCGAAGCC TTGTCCGCGGCAGAAGGTGGCGCCATTTCCACCGCTGTGCTTTATCCGCT TGAGGTAATTAAGACCGTCATCCAAGCCAGCAAGGGCAAGAAAAAGGCAG AGACAAAGCCGTCAGCTGCGAGTAGCTCGACCTGGAATGAAGAGCAAGCA CGGGCTGAAGAAGGTGAAGCCAGCCCCATTGCTGCTGCCGCCGCTGCCAC CGTCACTGCCATCACTCTTGCTTCTGGCAGCGCGGCGGAGAAAGAGAGGA AGGGAGGGGAGGATGCAGCCAAGCCCTTGACAAGCCGCGAGGTGGCCCAG GACATTTACAAGCGGGCGGGCGTGACGGGATTCTTCGGTGGGGTCCAGTA CGCGTCGCTGCAAAGTGCGTTGGAAAAATCGATTTATTTTTATGCCTACA GCACTATGAAGGGCATCACCAAGCTGCTGAATGGCGGCAGGTTCGGAGTG CGTGAGAACCTGATCGTCGGATACCTGAGCGAGGTCATCCACCTGCCCGT TACCGTCCCCCTGGAGGTGATCATCACGCGCATCATCACCAGCCAAGGCC GCGTCTCCTCTTGGGCGCAGGCCACGAAGGAGCTGCTGGAGGAAAACGGG GTTAAAGGCTTGTACAAAGGCATCACCACATATGGCGTCTTGTGCCTGAA GCCAGCCATCCAGTACACGGTCTTCGAGCAGCTCCGACGGGGCATCATCT CCTTCCTCTCGCGGCGACAAGGGGGTGCGCTGGAGGGAGGGCGGGAAGGA GGGAGGGAGATTCATACCTAGAACACATTCTCATTTCTCAACACTTCTTC TCCCCCTCCCTCCTTCCCTCCCTCCCTCC back to topprotein sequence of NO09G03880.3 >NO09G03880.3-protein ID=NO09G03880.3-protein|Name=NO09G03880.3|organism=Nannochloropsis oceanica|type=polypeptide|length=657bp MHHLPCRCNRRARQGYVWSQTLGVSSSSTSSPTTTTTTTTDDDGKDTGGG PTSSNSSFSVVAADVASRRPSRRFNVSTRGGEGGRAKVQVFRDLTRNRDP SWERAMEHTTFVSHLPKQLQEYEAQLTNNSLVRDQSRLIINKNDPANRRW LSMPNLDGVGEGGYSTASYLEREALASKARLGEAQGAVYRRKAGWMGEGG REGGTGGVPEEGLSVEEKIQLSMAQGDFDDLKGKGKPLEKFDVHHYATDK TSATYMDVLAKSGVKPVWIERSLRIKEAEKRVLKRLEGEWAKVVLEIWEE EEKGKGKGGRAGGRSQWRERVLGMRCLREDLAWVNAEIDLYNLQVPSMSL QRMRLKLDHLCEAVEERVGGGGGGWTRPRQGLYYKRDKWDMNSPEVLAEA LSAAEGGAISTAVLYPLEVIKTVIQASKGKKKAETKPSAASSSTWNEEQA RAEEGEASPIAAAAAATVTAITLASGSAAEKERKGGEDAAKPLTSREVAQ DIYKRAGVTGFFGGVQYASLQSALEKSIYFYAYSTMKGITKLLNGGRFGV RENLIVGYLSEVIHLPVTVPLEVIITRIITSQGRVSSWAQATKELLEENG VKGLYKGITTYGVLCLKPAIQYTVFEQLRRGIISFLSRRQGGALEGGREG GREIHT* back to topmRNA from alignment at chr9:1126238..1129756- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G03880.3 ID=NO09G03880.3|Name=NO09G03880.3|organism=Nannochloropsis oceanica|type=mRNA|length=3519bp|location=Sequence derived from alignment at chr9:1126238..1129756- (Nannochloropsis oceanica) ATGCATCACCTCCCGTGTCGCTGCAATCGGCGGGCGCGGCAAGGCTATGT
TTGGTCACAAACCCTCGGAGTCTCTTCCTCTTCGACCTCCTCCCCAACAA
CTACCACCACCACCACCACCGACGACGACGGGAAGGACACCGGAGGTGGC
CCCACCTCCTCTAATTCCTCCTTTAGCGTCGTCGCCGCCGATGTCGCCAG
CCGCCGCCCGTCGCGTCGGTTTAATGTCAGTACAAGAGGTGGGGAGGGAG
GACGAGCCAAAGTGCAAGTCTTTCGAGATCTGACCCGCAACCGCGATCCC
TCTTGGGAGCGGGCTATGGAGCATACAACATTCGTAAGCCACTTGCCTAA
ACAGCTGCAGGAATATGAGGCGCAGCTAACGAACAACTCCTTGGTGCGGG
ATCAGTCACGCTTGATCATCAATAAAAACGACCCGGCCAACAGGCGGTGG
TTGAGTATGCCGAACCTGGATGGCGTGGGGGAAGGTGGATACAGTACGGC
TAGCTACCTGGAGAGAGAGGCCTTGGCAAGTAAAGCCAGGCTGGGTGAAG
CCCAGGGGGCGGTTTATCGGCGGAAGGCGGGGTGGATGGGGGAGGGAGGG
AGGGAGGGAGGGACGGGAGGGGTGCCTGAGGAGGGGTTGAGTGTGGAAGA
GAAAATTCAGTTGAGCATGGCACAGGGGGATTTTGACGATTTAAAAGGCA
AGGGAAAGCCGTTGGAGAAATTCGACGGTACGTCTGGTTGAAAGATGGGA
GGAGAGGGAGGGCGGGAGGGAGGGAGGAAGACAGGAATAATTGTTTCTAG
GTTCTGTTGTTTGCTCTCCTCGAGTGGTGGTGCAGTGGGATGCCGTTCCT
TTCTTTTACCCTTCAAAATTTGATTTCTGCGTTGTCAACTCAATTTCCCC
TTCCTCTCTCCCTCCCTCCCTCCCTTCCCTCAGTTCATCATTATGCGACG
GACAAAACCAGCGCCACCTACATGGACGTGCTAGCCAAGTCAGGCGTGAA
GCCCGTGTGGATTGAGAGGTCCCTCCGGATAAAGGAGGCAGAGAAAAGGG
TGTTGAAGAGATTGGAGGGAGAGTGGGCCAAGGTGGTGTTGGAGATTTGG
GAAGAGGAGGAGAAGGGAAAAGGGAAGGGAGGGAGGGCGGGAGGGAGGTC
ACAGTGGAGGGAGAGGGTCCTGGGGATGAGGTGTTTGAGGGAGGACTTGG
CCTGGGTGAATGCGGAGATTGATTTGTATAATCTACAGGTGCCCTCCATG
TCCTTACAGCGAATGAGATTAAAGCTGGACCATTTGTGTGAGGCAGTGGA
GGAGCGAGTGGGGGGAGGGGGGGGTGGATGGACAAGACCACGGCAAGGGC
TGTAGTGAGAGAGGGGGAGAAGGAAGGGATGTTCAGTAATGTGACAGCGC
TGGGCTCGTTGCGGCTAGAGGCGGAGGAGCTGAAGAAAACCAAGAGGAAA
GATGGGAAGGGCAGTGGTGGGGGATCGGACATCTGGGGTGGAGGTGGAAG
CCCAAGCGGGGCCAAGGCGGGGGCAGGAAGAGGAGGGGGGATGCTCGATA
CGATAACCTCGTGGTTCTCGATGGGCCAAACAAAGCCATGACCATAACAC
AGCTACAAGAGAGGTAAGATGTTTCAAAAGCAAGTAAGACATTTTGCGTA
ATGCTTATGTATTTTTGTGACCACCAGGTCTGCCTGCCAGTTACCTCCCC
ATATGAACAACGGCGGCGGGAATCCCGACTGATCTTCTCGTATTTGAACT
CCAAGCAAGTGCACCCACCACAATCAAGCATGGTTCCGTTCTCCAGCCAC
CTATCGCTCTTCTTCCTCTCTAATCACCAATCGCACCGGCAAACATCTTA
CTAGCAAGAGGCGTAGCAACACCGCTGCCGCTGTTGACCTCATATGGGCT
CTTCTTTTGGCGAGAGGCAAACTGCAACCATCATCTCATCCGCATCATTT
ACACACAACCAAACAGACAAGTGGGACATGAACTCCCCGGAGGTGCTGGC
CGAAGCCTTGTCCGCGGCAGAAGGTGGCGCCATTTCCACCGCTGTGCTTT
ATCCGCTTGAGGTAAGAAGGTGGAGGGCGGGAGGGCGGGAGGGCGGGAGG
GCGGGAGGGCAGGAGGGCGGGAGGGAACGGGGGATGAATCAGAGCTGATG
CGCATTGACATCTCCGTAAGGTGTCTAGGTAGTAGGCCCATGAATGAGTG
CCTGTATCAGTGTTGCCAGACGATCGACAAACTACCAGGGGCACCCCTTC
ACCCCTGCCATCCAAATCCCCGCCACCGCCCCCATTCTCTTTCCATCCCT
CCCTCACCCTATACCCAAAGGTAATTAAGACCGTCATCCAAGCCAGCAAG
GGCAAGAAAAAGGCAGAGACAAAGCCGTCAGCTGCGAGTAGCTCGACCTG
GAATGAAGAGCAAGCACGGGCTGAAGAAGGTGAAGCCAGCCCCATTGCTG
CTGCCGCCGCTGCCACCGTCACTGCCATCACTCTTGCTTCTGGCAGCGCG
GCGGAGAAAGAGAGGAAGGGAGGGGAGGATGCAGCCAAGCCCTTGACAAG
CCGCGAGGTGGCCCAGGACATTTACAAGCGGGCGGGCGTGACGGGATTCT
TCGGTGGGGTCCAGTACGCGTCGCTGCAAAGTGCGTTGGAAAAATCGATT
TATTTTTATGCCTACAGCACTATGAAGGGCATCACCAAGCTGCTGAATGG
CGGCAGGTACGGAGGGAGGGGGGGAGGAAGGGAAGAGAAGAAAGGAGGGC
CAAGGAAAAATTGAAGTGCAGTTGACGTATGATGATATTAGGCATTTTAT
TCATCCACACTTGACGTACCCCAAAGGTTCGGAGTGCGTGAGAACCTGAT
CGTCGGATACCTGAGCGAGGTCATCCACCTGCCCGTTACCGGTACGTGCT
ACTTGCCGTCCTGTGCAAGCCCCTCCTCCTACCATCCCTTCCCACATCTA
TTTGAATCGCCAATGCACCATCGCCAGTTACCTCTAGGCCTCCCTCCCAC
CCCTCCCACCCCTTCCTCCCTCAGTCCCCCTGGAGGTGATCATCACGCGC
ATCATCACCAGCCAAGGCCGCGTCTCCTCTTGGGCGCAGGCCACGAAGGA
GCTGCTGGAGGAAAACGGGGTTAAAGGCTTGTACAAAGGCATCACCACAT
ATGTGAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGCAGGA
TTTGTGTACAATCTACTCCTGCATCCACTTGTGTGTCCGAAGAAGTCCTC
CCTTCGCGCCATACTTCCTCTGCCTCCCTCCCTCCCTCCCTCCCCCCTCT
TTTCTCTTAATCCCTACTTACAGGGCGTCTTGTGCCTGAAGCCAGCCATC
CAGTACACGGTCTTCGAGCAGCTCCGACGGGGCATCATCTCCTTCCTCTC
GCGGCGACAAGGGGGTGCGCTGGAGGGAGGGCGGGAAGGAGGGAGGGAGA
TTCATACCTAGAACACATTCTCATTTCTCAACACTTCTTCTCCCCCTCCC
TCCTTCCCTCCCTCCCTCC back to topCoding sequence (CDS) from alignment at chr9:1126238..1129756- >NO09G03880.3 ID=NO09G03880.3|Name=NO09G03880.3|organism=Nannochloropsis oceanica|type=CDS|length=1971bp|location=Sequence derived from alignment at chr9:1126238..1129756- (Nannochloropsis oceanica) ATGCATCACCTCCCGTGTCGCTGCAATCGGCGGGCGCGGCAAGGCTATGT TTGGTCACAAACCCTCGGAGTCTCTTCCTCTTCGACCTCCTCCCCAACAA CTACCACCACCACCACCACCGACGACGACGGGAAGGACACCGGAGGTGGC CCCACCTCCTCTAATTCCTCCTTTAGCGTCGTCGCCGCCGATGTCGCCAG CCGCCGCCCGTCGCGTCGGTTTAATGTCAGTACAAGAGGTGGGGAGGGAG GACGAGCCAAAGTGCAAGTCTTTCGAGATCTGACCCGCAACCGCGATCCC TCTTGGGAGCGGGCTATGGAGCATACAACATTCGTAAGCCACTTGCCTAA ACAGCTGCAGGAATATGAGGCGCAGCTAACGAACAACTCCTTGGTGCGGG ATCAGTCACGCTTGATCATCAATAAAAACGACCCGGCCAACAGGCGGTGG TTGAGTATGCCGAACCTGGATGGCGTGGGGGAAGGTGGATACAGTACGGC TAGCTACCTGGAGAGAGAGGCCTTGGCAAGTAAAGCCAGGCTGGGTGAAG CCCAGGGGGCGGTTTATCGGCGGAAGGCGGGGTGGATGGGGGAGGGAGGG AGGGAGGGAGGGACGGGAGGGGTGCCTGAGGAGGGGTTGAGTGTGGAAGA GAAAATTCAGTTGAGCATGGCACAGGGGGATTTTGACGATTTAAAAGGCA AGGGAAAGCCGTTGGAGAAATTCGACGTTCATCATTATGCGACGGACAAA ACCAGCGCCACCTACATGGACGTGCTAGCCAAGTCAGGCGTGAAGCCCGT GTGGATTGAGAGGTCCCTCCGGATAAAGGAGGCAGAGAAAAGGGTGTTGA AGAGATTGGAGGGAGAGTGGGCCAAGGTGGTGTTGGAGATTTGGGAAGAG GAGGAGAAGGGAAAAGGGAAGGGAGGGAGGGCGGGAGGGAGGTCACAGTG GAGGGAGAGGGTCCTGGGGATGAGGTGTTTGAGGGAGGACTTGGCCTGGG TGAATGCGGAGATTGATTTGTATAATCTACAGGTGCCCTCCATGTCCTTA CAGCGAATGAGATTAAAGCTGGACCATTTGTGTGAGGCAGTGGAGGAGCG AGTGGGGGGAGGGGGGGGTGGATGGACAAGACCACGGCAAGGGCTGTACT ACAAGAGAGACAAGTGGGACATGAACTCCCCGGAGGTGCTGGCCGAAGCC TTGTCCGCGGCAGAAGGTGGCGCCATTTCCACCGCTGTGCTTTATCCGCT TGAGGTAATTAAGACCGTCATCCAAGCCAGCAAGGGCAAGAAAAAGGCAG AGACAAAGCCGTCAGCTGCGAGTAGCTCGACCTGGAATGAAGAGCAAGCA CGGGCTGAAGAAGGTGAAGCCAGCCCCATTGCTGCTGCCGCCGCTGCCAC CGTCACTGCCATCACTCTTGCTTCTGGCAGCGCGGCGGAGAAAGAGAGGA AGGGAGGGGAGGATGCAGCCAAGCCCTTGACAAGCCGCGAGGTGGCCCAG GACATTTACAAGCGGGCGGGCGTGACGGGATTCTTCGGTGGGGTCCAGTA CGCGTCGCTGCAAAGTGCGTTGGAAAAATCGATTTATTTTTATGCCTACA GCACTATGAAGGGCATCACCAAGCTGCTGAATGGCGGCAGGTTCGGAGTG CGTGAGAACCTGATCGTCGGATACCTGAGCGAGGTCATCCACCTGCCCGT TACCGTCCCCCTGGAGGTGATCATCACGCGCATCATCACCAGCCAAGGCC GCGTCTCCTCTTGGGCGCAGGCCACGAAGGAGCTGCTGGAGGAAAACGGG GTTAAAGGCTTGTACAAAGGCATCACCACATATGGCGTCTTGTGCCTGAA GCCAGCCATCCAGTACACGGTCTTCGAGCAGCTCCGACGGGGCATCATCT CCTTCCTCTCGCGGCGACAAGGGGGTGCGCTGGAGGGAGGGCGGGAAGGA GGGAGGGAGATTCATACCTAG back to top
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