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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr9 | genome | chr9:1097114..1098888 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G03820.1 vs.
Match: EWM27420.1 (hypothetical protein Naga_100138g1 [Nannochloropsis gaditana]) HSP 1 Score: 343.6 bits (880), Expect = 1.000e-90 Identity = 193/359 (53.76%), Postives = 238/359 (66.30%), Query Frame = 0
Query: 32 TVVCFKCAGTGRVQVKRKLKRPRPPSTASD---YSVEPEPELALAANEALIKQGSRNLQVIQSCHVCQGNGVLVSSKKERGLATAGIITTARRPPGFRVWGPLPPSGTAIPNPVAGEALCCLTGAWRIFQPLGGHRYSTDDVVTAWVAGQEAQRGWGAWLSKWREGQEGIEKTTQD---AFLLT-----TDRTTGEEEEM-----EAGENMLGLDLGCGLGSVLMMVCWQLPRLRSVGVEAQAASVERARRSLLVNGCSDRVQVQHADFRTLF--SSSCPSLPSSCPSLPTFFSPSSPSFTDPPRTIPPPPSVRPSQPLIIEAHSIDLITGTPPYFDGHGAPPPSYASDPPINVSSLPS 373
++ CFKCAGTGRVQ+KRK+KR + + S+ P P+L LAA+EAL+ +G+R Q+ ++CHVCQG G +VS+KK RG+ G++T RRPP F++ GPL PS P P AGEALCCL+G WRIFQP+GGHRYSTDDVVTAW+AG+E +RGWG RE G+E D A LL + G EE+ E GE + GLDLGCGLGSVLMMVCWQLPRL +VG+EAQA+SVERARRSLLVNGC+DR V+H DFR F SSS + SLP P SP + S+ +P EA + LITGTPPYFDGHGAP P + +DPPI+V+SL S
Sbjct: 3 SISCFKCAGTGRVQIKRKVKRSHCAQDSPNDTPQSLTPLPKLQLAADEALVTKGNRTAQITRTCHVCQGRGEIVSTKKRRGMDKTGVVTIPRRPPDFKLRGPLRPSSMTSPQPQAGEALCCLSGDWRIFQPVGGHRYSTDDVVTAWIAGEEMRRGWG------RELLRGVESDKADGKCAGLLLIRGGGEKQADGRREEVVRGAQEQGEGLRGLDLGCGLGSVLMMVCWQLPRLHAVGIEAQASSVERARRSLLVNGCADRACVRHGDFRNFFPLSSSGSAAAKIRTSLPAPPPPLSP-------LVSSSSSLSSPEPRAFEARTFHLITGTPPYFDGHGAPAPFHPADPPISVTSLSS 348
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G03820.1 ID=NO09G03820.1|Name=NO09G03820.1|organism=Nannochloropsis oceanica|type=mRNA|length=1500bp ATGGCCTCCAACGCCACATCTCTCGCATTATCCACTCCTTCCACCACCAT GCCAGCCGCTAGTGCCATCACTACTACTACCACCAAGACAAGCACCGTCG TATGTTTCAAGTGTGCTGGGACGGGCCGCGTACAGGTCAAGCGCAAGCTC AAGCGTCCCCGTCCGCCTTCTACCGCCTCTGACTACTCTGTCGAGCCAGA GCCGGAGCTAGCGCTAGCCGCAAACGAAGCTCTCATCAAGCAAGGCAGCC GCAACCTCCAAGTCATACAGTCATGTCATGTGTGCCAGGGGAATGGTGTG CTCGTCTCAAGCAAGAAAGAACGGGGACTGGCCACAGCCGGCATTATCAC AACGGCCCGGCGCCCACCCGGGTTTCGAGTGTGGGGTCCATTGCCCCCAT CTGGGACAGCAATACCAAATCCGGTCGCAGGAGAAGCTCTCTGTTGTCTC ACGGGAGCCTGGCGAATTTTTCAGCCGCTCGGAGGGCATCGTTATTCGAC GGATGATGTGGTGACGGCTTGGGTGGCGGGGCAAGAAGCACAACGAGGGT GGGGAGCGTGGCTTTCCAAGTGGAGGGAAGGACAAGAAGGAATCGAAAAG ACGACACAAGATGCCTTTCTTCTAACAACGGACAGGACAACTGGCGAGGA GGAGGAAATGGAAGCTGGAGAAAATATGCTGGGGCTTGACTTGGGCTGCG GCTTGGGGAGCGTTCTAATGATGGTATGCTGGCAGCTACCACGCCTGCGC TCGGTGGGTGTCGAGGCACAAGCAGCGTCAGTGGAACGGGCACGACGGTC CTTGCTTGTGAATGGATGTTCTGATCGCGTTCAAGTCCAGCACGCGGACT TCCGGACCCTCTTTTCTTCCTCGTGCCCTTCCTTGCCCTCCTCGTGCCCT TCCTTGCCCACCTTCTTCTCCCCATCCTCGCCTTCGTTCACGGATCCACC GCGTACAATTCCTCCCCCTCCCTCTGTGCGGCCCTCCCAGCCCCTCATAA TAGAAGCACACTCGATTGACCTCATCACTGGCACTCCCCCGTACTTCGAC GGTCACGGCGCCCCTCCTCCCTCTTACGCTTCGGATCCTCCCATCAACGT CTCCTCCCTCCCTTCCTCTTCCCCCCCCCATCCTCTTTTTCCTCCTCCTC CACGACCAATTTCCCCTCCGTCATCCGTACCAAGAGTGGCGGGGATGGCA GCGGCGTTCTCGGGGGAGAAGGGGGAGACAGAAAATGAAAAGGGGGGCAT TGAAGAGGTTCCAAGTTATGACGGGAGTGGAACTGGCGGGGAGAAGAGAG ACCAGGAGAAAATACATAGACTTACGAATAGTAGTCGCAAGCCCACTGCT TCCTCGAATATCAGGGTTCGTGAGACGTTGGCTGTCCGGGAAGCAATGCC TACATCAAGTGAAATGAAGACTGGCATTATGGTGCATCGGCGGACGACAG CCTACCGGCAAGTCCTTCATGATATGTGCATGCCTGACAATGAGGTGTAA back to topprotein sequence of NO09G03820.1 >NO09G03820.1-protein ID=NO09G03820.1-protein|Name=NO09G03820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=500bp MASNATSLALSTPSTTMPAASAITTTTTKTSTVVCFKCAGTGRVQVKRKL KRPRPPSTASDYSVEPEPELALAANEALIKQGSRNLQVIQSCHVCQGNGV LVSSKKERGLATAGIITTARRPPGFRVWGPLPPSGTAIPNPVAGEALCCL TGAWRIFQPLGGHRYSTDDVVTAWVAGQEAQRGWGAWLSKWREGQEGIEK TTQDAFLLTTDRTTGEEEEMEAGENMLGLDLGCGLGSVLMMVCWQLPRLR SVGVEAQAASVERARRSLLVNGCSDRVQVQHADFRTLFSSSCPSLPSSCP SLPTFFSPSSPSFTDPPRTIPPPPSVRPSQPLIIEAHSIDLITGTPPYFD GHGAPPPSYASDPPINVSSLPSSSPPHPLFPPPPRPISPPSSVPRVAGMA AAFSGEKGETENEKGGIEEVPSYDGSGTGGEKRDQEKIHRLTNSSRKPTA SSNIRVRETLAVREAMPTSSEMKTGIMVHRRTTAYRQVLHDMCMPDNEV* back to topmRNA from alignment at chr9:1097114..1098888- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G03820.1 ID=NO09G03820.1|Name=NO09G03820.1|organism=Nannochloropsis oceanica|type=mRNA|length=1775bp|location=Sequence derived from alignment at chr9:1097114..1098888- (Nannochloropsis oceanica) ATGGCCTCCAACGCCACATCTCTCGCATTATCCACTCCTTCCACCACCAT
GCCAGCCGCTAGTGCCATCACTACTACTACCACCAAGACAAGCACCGTCG
TATGTTTCAAGTGTGCTGGGACGGGCCGCGTACAGGTCAAGCGCAAGCTC
AAGCGTCCCCGTCCGCCTTCTACCGCCTCTGACTACTCTGTCGAGCCAGA
GCCGGAGCTAGCGCTAGCCGCAAACGAAGCTCTCATCAAGCAAGGCAGCC
GCAACCTCCAAGTCATACAGTCATGTCATGTGTGCCAGGGGAATGGTGTG
CTCGTCTCAAGCAAGAAAGAACGGGGACTGGCCACAGCCGGCATTATCAC
AACGGCCCGGCGCCCACCCGGGTTTCGAGTGTGGGGTCCATTGCCCCCAT
CTGGGACAGCAATACCAAATCCGGTCGCAGGAGAAGCTCTCTGTTGTCTC
ACGGGAGCCTGGCGAATTTTTCAGCCGCTCGGAGGGCATCGTTATTCGAC
GGATGATGTGGTGACGGCTTGGGTGGCGGGGCAAGAAGCACAACGAGGGT
GGGGAGCGTGGCTTTCCAAGTGGAGGGAAGGACAAGAAGGAATCGAAAAG
ACGACACAAGATGCCTTTCTTCTAACAACGGACAGGACAACTGGCGAGGA
GGAGGAAATGGAAGCTGGAGAAAATATGCTGGGGCTTGACTTGGGCTGCG
GCTTGGGGAGCGTTCTAATGATGGTATGCTGGCAGCTACCACGCCTGCGC
TCGGTGGGTGTCGAGGCACAAGCAGCGTCAGTGGAACGGGCACGACGGTC
CTTGCTTGTGAATGGATGTTCTGATCGCGTTCAAGTCCAGCACGCGGACT
TCCGGACCCTCTTTTCTTCCTCGTGCCCTTCCTTGCCCTCCTCGTGCCCT
TCCTTGCCCACCTTCTTCTCCCCATCCTCGCCTTCGTTCACGGATCCACC
GCGTACAATTCCTCCCCCTCCCTCTGTGCGGCCCTCCCAGCCCCTCATAA
TAGAAGCACACTCGATTGACCTCATCACTGGCACTCCCCCGTACTTCGAC
GGTCACGGCGCCCCTCCTCCCTCTTACGCTTCGGATCCTCCCATCAACGT
CTCCTCCCTCCCTTCCTCTTCCCCCCCCCATCCTCTTTTTCCTCCTCCTC
CACGACCAATTTCCCCTCCGTCATCCGTACCAAGAGTGGTAAGCCCCGCC
TCCGTCCTTCTATCCTCCCCACTGCTGAAGACCAACGGCCCTGCAATTTT
GAACTGCGAGGTGGTGTTGAAGTGTACATCCACACAGCCTCTCTCGCCTT
GGCCCCTCGAGGGATCTTCGTCATGTGTGCTTCGGACCTGCCCGGAGTCG
AGGCACGCGTACTCGCATCTGTGGAGGAGAATGGGCTGGTGGTCTTAAGG
AAAATGGAGGTGTTGCCAAAGGAAGGACAACCGAGCTTGTTTGCTGTGTA
TACTATGTGTCAGGCGGGGATGGCAGCGGCGTTCTCGGGGGAGAAGGGGG
AGACAGAAAATGAAAAGGGGGGCATTGAAGAGGTTCCAAGTTATGACGGG
AGTGGAACTGGCGGGGAGAAGAGAGACCAGGAGAAAATACATAGACTTAC
GAATAGTAGTCGCAAGCCCACTGCTTCCTCGAATATCAGGGTTCGTGAGA
CGTTGGCTGTCCGGGAAGCAATGCCTACATCAAGTGAAATGAAGACTGGC
ATTATGGTGCATCGGCGGACGACAGCCTACCGGCAAGTCCTTCATGATAT
GTGCATGCCTGACAATGAGGTGTAA back to topCoding sequence (CDS) from alignment at chr9:1097114..1098888- >NO09G03820.1 ID=NO09G03820.1|Name=NO09G03820.1|organism=Nannochloropsis oceanica|type=CDS|length=1500bp|location=Sequence derived from alignment at chr9:1097114..1098888- (Nannochloropsis oceanica) ATGGCCTCCAACGCCACATCTCTCGCATTATCCACTCCTTCCACCACCAT GCCAGCCGCTAGTGCCATCACTACTACTACCACCAAGACAAGCACCGTCG TATGTTTCAAGTGTGCTGGGACGGGCCGCGTACAGGTCAAGCGCAAGCTC AAGCGTCCCCGTCCGCCTTCTACCGCCTCTGACTACTCTGTCGAGCCAGA GCCGGAGCTAGCGCTAGCCGCAAACGAAGCTCTCATCAAGCAAGGCAGCC GCAACCTCCAAGTCATACAGTCATGTCATGTGTGCCAGGGGAATGGTGTG CTCGTCTCAAGCAAGAAAGAACGGGGACTGGCCACAGCCGGCATTATCAC AACGGCCCGGCGCCCACCCGGGTTTCGAGTGTGGGGTCCATTGCCCCCAT CTGGGACAGCAATACCAAATCCGGTCGCAGGAGAAGCTCTCTGTTGTCTC ACGGGAGCCTGGCGAATTTTTCAGCCGCTCGGAGGGCATCGTTATTCGAC GGATGATGTGGTGACGGCTTGGGTGGCGGGGCAAGAAGCACAACGAGGGT GGGGAGCGTGGCTTTCCAAGTGGAGGGAAGGACAAGAAGGAATCGAAAAG ACGACACAAGATGCCTTTCTTCTAACAACGGACAGGACAACTGGCGAGGA GGAGGAAATGGAAGCTGGAGAAAATATGCTGGGGCTTGACTTGGGCTGCG GCTTGGGGAGCGTTCTAATGATGGTATGCTGGCAGCTACCACGCCTGCGC TCGGTGGGTGTCGAGGCACAAGCAGCGTCAGTGGAACGGGCACGACGGTC CTTGCTTGTGAATGGATGTTCTGATCGCGTTCAAGTCCAGCACGCGGACT TCCGGACCCTCTTTTCTTCCTCGTGCCCTTCCTTGCCCTCCTCGTGCCCT TCCTTGCCCACCTTCTTCTCCCCATCCTCGCCTTCGTTCACGGATCCACC GCGTACAATTCCTCCCCCTCCCTCTGTGCGGCCCTCCCAGCCCCTCATAA TAGAAGCACACTCGATTGACCTCATCACTGGCACTCCCCCGTACTTCGAC GGTCACGGCGCCCCTCCTCCCTCTTACGCTTCGGATCCTCCCATCAACGT CTCCTCCCTCCCTTCCTCTTCCCCCCCCCATCCTCTTTTTCCTCCTCCTC CACGACCAATTTCCCCTCCGTCATCCGTACCAAGAGTGGCGGGGATGGCA GCGGCGTTCTCGGGGGAGAAGGGGGAGACAGAAAATGAAAAGGGGGGCAT TGAAGAGGTTCCAAGTTATGACGGGAGTGGAACTGGCGGGGAGAAGAGAG ACCAGGAGAAAATACATAGACTTACGAATAGTAGTCGCAAGCCCACTGCT TCCTCGAATATCAGGGTTCGTGAGACGTTGGCTGTCCGGGAAGCAATGCC TACATCAAGTGAAATGAAGACTGGCATTATGGTGCATCGGCGGACGACAG CCTACCGGCAAGTCCTTCATGATATGTGCATGCCTGACAATGAGGTGTAA back to top
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