NO09G03680.1, NO09G03680.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G03680.1
Unique NameNO09G03680.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1470
Alignment locationchr9:1060528..1063250 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1060528..1063250 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G03680.1 vs.
Match: EWM27436.1 (hypothetical protein Naga_100482g3 [Nannochloropsis gaditana])

HSP 1 Score: 408.3 bits (1048), Expect = 2.000e-110
Identity = 239/288 (82.99%), Postives = 260/288 (90.28%), Query Frame = 0 
Query:    1 MPPKGK---KADAKKAERLIEDKTFGLKNKNKSKKVQQYVAHVTTQTKHNVGIKTEAEKAAALKAKKEAKEKEDVELKLLFMQMQAGAGKTSKAMEAAAEAAKAKRDAAMAAKGGKGEAQWIEIDMTGKPLEEVIEYERQKLTFFKKNVTPVTEASFAQWKKDKAEKRKRENAERVKAEMAKKTKGKGLSVLSGKALFEYDATLFVDDEEAGEEQVDVKNLKSLMEEEDEERERGGGGEEEGEGLAVAVQENLYLE---EEDDLDDLDDDDDEEEEAERQDGGSAGEG 283
            MPPK K   KAD K+AE+LIEDKTFGLKNKNKSKKVQQYV  VTTQTKHN+G+KTEAEKAAA KAKKEAKEKEDVELKLLFMQMQAGAGKTSKAMEAAAEA KAKR+AAM AKGG+G AQWIEIDMTGKPLEEVIEYERQKL FFKKNVTPVTE SFA+WKK+KAEKRKRENAE+VKAE+AKKTKGKGLSVLSGKALFEYDA LFVDDEEAGEEQVDVK L+SLMEEE+   +R G GE   EGLAVAVQE+LYLE   E+DDLDDL+D+++EEEEAE + GG+AGEG
Sbjct:    1 MPPKAKANKKADTKRAEKLIEDKTFGLKNKNKSKKVQQYVQAVTTQTKHNIGVKTEAEKAAAAKAKKEAKEKEDVELKLLFMQMQAGAGKTSKAMEAAAEAQKAKREAAMKAKGGQGAAQWIEIDMTGKPLEEVIEYERQKLAFFKKNVTPVTEESFARWKKEKAEKRKRENAEKVKAEIAKKTKGKGLSVLSGKALFEYDAALFVDDEEAGEEQVDVKKLRSLMEEEE---DRDGEGE---EGLAVAVQESLYLEGEGEDDDLDDLEDEEEEEEEAEGEGGGAAGEG 282
The following BLAST results are available for this feature:
BLAST of NO09G03680.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27436.12.000e-11082.99hypothetical protein Naga_100482g3 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G03680NO09G03680Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G03680.1NO09G03680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G03680.1.cds1NO09G03680.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03680.1.cds2NO09G03680.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03680.1.cds3NO09G03680.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03680.1.cds4NO09G03680.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03680.1.cds5NO09G03680.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03680.1.cds6NO09G03680.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G03680.1 ID=NO09G03680.1|Name=NO09G03680.1|organism=Nannochloropsis oceanica|type=mRNA|length=1470bp
TTTCTTCCATGCTGTGCTGCCACCCAACTATATGAGGCATGCAAGCGCGA
GATTCAATATCAGACGGGGCGTAAATGGACCCTCCGTTCTCGAACTTGCA
ATCAAGGTCATGCTTAGAGTCACGGTTGATGCGGCAGCAGCAATTACTGC
TTTTGAAAAGGAGAAGATCACAAGCGGCACTCACCCTTCCGCCACGCTGC
CAGATCACAATACCACAGGGACACTGCCACCCATTCAGCCCTCCATCAGG
CCTCACGCGGGGCGTGTCTTCGTGCGGAGAGGCGGTCCTGTTTCGTTGTA
TCCAGCACCCACCGTTCGTGGAGCCACAAGCAATCAGCAGCCATGCCCCC
AAAAGGCAAGAAGGCCGATGCCAAGAAGGCGGAGAGGCTGATCGAGGACA
AGACTTTCGGCCTCAAAAACAAGAATAAGAGCAAAAAGGTCCAGCAGTAC
GTGGCGCACGTGACGACCCAGACAAAGCACAACGTCGGGATAAAGACCGA
GGCAGAAAAAGCGGCGGCTCTCAAGGCGAAGAAGGAGGCCAAGGAGAAGG
AGGATGTTGAGCTCAAGCTTCTCTTCATGCAGATGCAAGCAGGAGCGGGT
AAGACGAGCAAAGCAATGGAGGCAGCGGCCGAGGCGGCGAAAGCTAAGAG
AGACGCGGCCATGGCGGCCAAGGGCGGAAAGGGGGAGGCACAATGGATTG
AGATTGACATGACGGGGAAGCCGCTGGAGGAGGTCATCGAGTACGAGCGT
CAAAAATTGACATTTTTTAAGAAGAATGTGACCCCTGTCACGGAGGCGTC
GTTCGCGCAATGGAAGAAGGACAAGGCCGAGAAGAGGAAGAGGGAGAACG
CGGAGAGGGTCAAGGCGGAGATGGCCAAGAAGACCAAAGGCAAGGGTCTG
AGCGTACTGAGTGGAAAAGCGCTTTTCGAGTACGACGCGACCCTGTTTGT
CGACGACGAGGAAGCGGGAGAGGAGCAGGTGGATGTGAAGAACTTGAAAT
CGTTGATGGAGGAGGAGGACGAGGAGAGGGAGAGGGGGGGAGGGGGCGAG
GAGGAAGGGGAGGGGCTTGCGGTGGCGGTACAGGAGAATTTGTACTTGGA
GGAGGAGGATGATCTTGACGACCTAGACGATGACGATGATGAGGAGGAGG
AAGCTGAGAGGCAGGATGGGGGGAGTGCTGGGGAAGGAGGGGGGAAGAGG
GGTTGAAGGGAGGGAGGGAGGGGGGAGAGAGATGTTGTATAGTGAGAGGA
GAGGAAGAGGGGAAGGGAGGATGCGCTTAATTAACGGCAATGGTGGAGCT
TGGGATGGGCCTGAGTAGAGATCGAGGTGAAGGGGGAATTCGCGGACGGG
AGGGTAGATAGAGAGATGAGCTCAGCGAATGAGAGGGAGAGGGAGAGAGG
GATAGAGGAAGGAGTAAGAGTTTGACATCACACATTAAAGAAAATCGAAC
ACCAGTTAGCGATAAACAAA
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protein sequence of NO09G03680.1

>NO09G03680.1-protein ID=NO09G03680.1-protein|Name=NO09G03680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=288bp
MPPKGKKADAKKAERLIEDKTFGLKNKNKSKKVQQYVAHVTTQTKHNVGI
KTEAEKAAALKAKKEAKEKEDVELKLLFMQMQAGAGKTSKAMEAAAEAAK
AKRDAAMAAKGGKGEAQWIEIDMTGKPLEEVIEYERQKLTFFKKNVTPVT
EASFAQWKKDKAEKRKRENAERVKAEMAKKTKGKGLSVLSGKALFEYDAT
LFVDDEEAGEEQVDVKNLKSLMEEEDEERERGGGGEEEGEGLAVAVQENL
YLEEEDDLDDLDDDDDEEEEAERQDGGSAGEGGGKRG*
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mRNA from alignment at chr9:1060528..1063250+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G03680.1 ID=NO09G03680.1|Name=NO09G03680.1|organism=Nannochloropsis oceanica|type=mRNA|length=2723bp|location=Sequence derived from alignment at chr9:1060528..1063250+ (Nannochloropsis oceanica)
TTTCTTCCATGCTGTGCTGCCACCCAACTATATGAGGCATGCAAGCGCGA
GATTCAATATCAGACGGGGCGTAAATGGACCCTCCGTTCTCGAACTTGCA
ATCAAGGTCATGCTTAGAGTCACGGTTGATGCGGCAGCAGCAATTACTGC
TTTTGAAAAGGAGAAGATCACAAGCGGCACTCACCCTTCCGCCACGCTGC
CAGATCACAATACCACAGGGACACTGCCACCCATTCAGCCCTCCATCAGG
CCTCACGCGGGGCGTGTCTTCGTGCGGAGAGGCGGTCCTGTTTCGTTGTA
TCCAGCACCCACCGTTCGTGGAGCCACAAGCAATCAGGCATGTTTCTTCT
CCTTGTTTGCCTCGCTCCCTTCCATCTCCTTCGTCCTTTCCACCGTCCTT
CCCTTACTTTCTCACAAACGCAGATCTTGCTACTATGTGGTCATCGATGA
TGAGAGTTTTGTTGTTTAGACATCCTTTCTCGACATTCAGTCTCTTACAC
CCTCCCATTCCCCTCCATTTCTCCTTCAGCAGCCATGCCCCCAAAAGGCA
AGAAGGCCGATGCCAAGAAGGCGGAGAGGCTGATCGAGGACAAGACTTTC
GGCCTCAAAAACAAGAATAAGAGCAAAAAGGTGCGTTTGGGTGAGAAGAG
GAAAGGGGGGAGAAGACGGAGAGATCGTCGGGATGGAACGGATGTAGGTA
GGCATGCAACACGACTCACTTTCTGTCGCGAGCGTTGGCATGGTGGCAAT
TGGACGTGGGTCCGCTTGAAGACAATCGATCGTTCCACCGGAACTGACGC
TCCCTCTCTCCTTCTTTCCCTTCATTTCTTCCTCGGCCCGTCCCACCCAT
CCACAGGTCCAGCAGTACGTGGCGCACGTGACGACCCAGACAAAGCACAA
CGTCGGGATAAAGACCGAGGCAGAAAAAGCGGCGGCTCTCAAGGCGAAGA
AGGAGGCCAAGGAGAAGGAGGATGTTGAGCTCAAGCTTCTCTTCATGCAG
GTAAAGAAAGGAGGGAGGGAGGGAGGGAGGGAGGGAATTTGGTTGGGGGG
AAGGCGGGTCAGGCACTTCATTCATACAGACTCACTCGTCTCTCCCTCCC
GCCCTCCCTCCCTTCCTTCCTTCCTCATTTCCCCAGATGCAAGCAGGAGC
GGGTAAGACGAGCAAAGCAATGGAGGCAGCGGCCGAGGCGGCGAAAGCTA
AGAGAGACGCGGCCATGGCGGCCAAGGGCGGAAAGGGGGAGGCACAATGG
ATTGAGATTGACATGACGGGGAAGCCGCTGGAGGAGGTAGGTAGGTAGGG
AGGGAGGGAGGGAGAGAGAAGGAGGGAGAGAGGAAGAGACGCAGTCGATT
GAGATGGGCATGTTAAAATGAATCTCTGGAGGGAGGAGGGAGAGAGGGAC
GGAGAGAGGGACGGAGAGATACCTACGTGCTTCATTCCCTCTGTTGATGG
CCGATTACTATTATTTTCCAACACTCTCTGCCATCCCTCCCTCCCTCCCT
CCCTCCCTCTCTCTTTCTCTCCCTCCCTCCCTCCCTCCCTAGGTCATCGA
GTACGAGCGTCAAAAATTGACATTTTTTAAGAAGAATGTGACCCCTGTCA
CGGTACGTCGCACGCGCAGGAGGGAGGGAGGGAGGGAGGAAGGGAGGGAG
GGAGGGAGGGAGGGGGGAAGGGGAGGTGTGGCGATGGCGTGAGAATTTAC
GGACCCGCATACCCGTACTCTCTTCCTTTGATTATTCCCCGTCGTCATCT
TATCATCTATAGGAGGCGTCGTTCGCGCAATGGAAGAAGGACAAGGCCGA
GAAGAGGAAGAGGGAGAACGCGGAGAGGGTGAGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
AGAGGTAGTAGGGAGGGAGGAAAAGAGATGCCGGGCCAGTCATGCCGTTG
CTTTTGTCCAGGGGATCGGAGGGAGCGCAAAGCTTTATACACGTCAACGG
AAGCCCCTGTGTAGACACTCACCTTCTCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
GCCCGGACCAGGTCAAGGCGGAGATGGCCAAGAAGACCAAAGGCAAGGGT
CTGAGCGTACTGAGTGGAAAAGCGCTTTTCGAGTACGACGCGACCCTGTT
TGTCGACGACGAGGAAGCGGGAGAGGAGCAGGTGGATGTGAAGAACTTGA
AATCGTTGATGGAGGAGGAGGACGAGGAGAGGGAGAGGGGGGGAGGGGGC
GAGGAGGAAGGGGAGGGGCTTGCGGTGGCGGTACAGGAGAATTTGTACTT
GGAGGAGGAGGATGATCTTGACGACCTAGACGATGACGATGATGAGGAGG
AGGAAGCTGAGAGGCAGGATGGGGGGAGTGCTGGGGAAGGAGGGGGGAAG
AGGGGTTGAAGGGAGGGAGGGAGGGGGGAGAGAGATGTTGTATAGTGAGA
GGAGAGGAAGAGGGGAAGGGAGGATGCGCTTAATTAACGGCAATGGTGGA
GCTTGGGATGGGCCTGAGTAGAGATCGAGGTGAAGGGGGAATTCGCGGAC
GGGAGGGTAGATAGAGAGATGAGCTCAGCGAATGAGAGGGAGAGGGAGAG
AGGGATAGAGGAAGGAGTAAGAGTTTGACATCACACATTAAAGAAAATCG
AACACCAGTTAGCGATAAACAAA
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Coding sequence (CDS) from alignment at chr9:1060528..1063250+

>NO09G03680.1 ID=NO09G03680.1|Name=NO09G03680.1|organism=Nannochloropsis oceanica|type=CDS|length=864bp|location=Sequence derived from alignment at chr9:1060528..1063250+ (Nannochloropsis oceanica)
ATGCCCCCAAAAGGCAAGAAGGCCGATGCCAAGAAGGCGGAGAGGCTGAT
CGAGGACAAGACTTTCGGCCTCAAAAACAAGAATAAGAGCAAAAAGGTCC
AGCAGTACGTGGCGCACGTGACGACCCAGACAAAGCACAACGTCGGGATA
AAGACCGAGGCAGAAAAAGCGGCGGCTCTCAAGGCGAAGAAGGAGGCCAA
GGAGAAGGAGGATGTTGAGCTCAAGCTTCTCTTCATGCAGATGCAAGCAG
GAGCGGGTAAGACGAGCAAAGCAATGGAGGCAGCGGCCGAGGCGGCGAAA
GCTAAGAGAGACGCGGCCATGGCGGCCAAGGGCGGAAAGGGGGAGGCACA
ATGGATTGAGATTGACATGACGGGGAAGCCGCTGGAGGAGGTCATCGAGT
ACGAGCGTCAAAAATTGACATTTTTTAAGAAGAATGTGACCCCTGTCACG
GAGGCGTCGTTCGCGCAATGGAAGAAGGACAAGGCCGAGAAGAGGAAGAG
GGAGAACGCGGAGAGGGTCAAGGCGGAGATGGCCAAGAAGACCAAAGGCA
AGGGTCTGAGCGTACTGAGTGGAAAAGCGCTTTTCGAGTACGACGCGACC
CTGTTTGTCGACGACGAGGAAGCGGGAGAGGAGCAGGTGGATGTGAAGAA
CTTGAAATCGTTGATGGAGGAGGAGGACGAGGAGAGGGAGAGGGGGGGAG
GGGGCGAGGAGGAAGGGGAGGGGCTTGCGGTGGCGGTACAGGAGAATTTG
TACTTGGAGGAGGAGGATGATCTTGACGACCTAGACGATGACGATGATGA
GGAGGAGGAAGCTGAGAGGCAGGATGGGGGGAGTGCTGGGGAAGGAGGGG
GGAAGAGGGGTTGA
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Synonyms
Publications