NO09G03610.1, NO09G03610.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G03610.1
Unique NameNO09G03610.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1461
Alignment locationchr9:1035892..1037664 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1035892..1037664 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G03610.1 vs.
Match: EWM27441.1 (Ribosomal protein L18e/L15P [Nannochloropsis gaditana])

HSP 1 Score: 416.8 bits (1070), Expect = 6.500e-113
Identity = 222/312 (71.15%), Postives = 247/312 (79.17%), Query Frame = 0 
Query:   26 PHRPFPHTAMLSTVLRRTCTAGS-SGRPVGGTA-ALHMCRSPQASSLALAAGVAGRSCRAA-FNTQSSSSSSSLSLNNLSDNPGAKTERTRVGRGCGSGKGKTAGRGMNGQKKRSSVNIPQGFEGGQTPLHRRLPKTGFKNIWAEPLTPLHVGELQNWVDMGRLSVPPNRLVTMKDLVDAGLFKANKIKHGIKLLARGGEHVHTPIHLEVSRASAAAIEAVEKVGGTITCVHFNRLALRALLKPEAFVVPVLGEGGEVEERLQLPRRARPPPKLMPLYLDSDRRGYLSPEVQMRNRTLFGGQVTSERVPELA 335
            PHR      MLS + R   T G    R +GG   AL +  S   SS A+  G       AA       S+ S LSL++L DNPGAK ER RVGRG GSG GKT+GRGMNGQKKRSSVNIPQGFEGGQTP+HRRLPKTGFKNIWAEPLTPLHVG +QNW+DMGRL VP +RL+TMKDLVDAG+FKAN++KHGIKLLARGGEHVHTP H+EVSRAS  AI+AVEK GGT+TCVHFNRLALRALLKPEAF VP+LGE G+VEE LQLPRRARPPP+LMPLYLDSDRRGYLSPEVQ RN+ LF GQV SE +P+LA
Sbjct:   40 PHRD----GMLSVLSRNLRTIGGWDRRRIGGVLRALPLLSSQSPSSGAIPPGEPRMGISAASILVAHLSTGSFLSLSDLHDNPGAKRERKRVGRGIGSGSGKTSGRGMNGQKKRSSVNIPQGFEGGQTPMHRRLPKTGFKNIWAEPLTPLHVGTVQNWIDMGRLVVPADRLMTMKDLVDAGIFKANRVKHGIKLLARGGEHVHTPFHIEVSRASLGAIDAVEKAGGTVTCVHFNRLALRALLKPEAFRVPMLGEDGQVEETLQLPRRARPPPRLMPLYLDSDRRGYLSPEVQRRNKDLFNGQVISEEIPKLA 347
The following BLAST results are available for this feature:
BLAST of NO09G03610.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27441.16.500e-11371.15Ribosomal protein L18e/L15P [Nannochloropsis gadit... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G03610NO09G03610Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G03610.1NO09G03610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G03610.1.cds1NO09G03610.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03610.1.cds2NO09G03610.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03610.1.cds3NO09G03610.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G03610.1 ID=NO09G03610.1|Name=NO09G03610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1461bp
ACGAAAAGCACTACCAAGGCCTGTGAACGGTGTGTGCAGCGGTGTGTGGG
GAATGTCGCTTAGTCGGAGCATGTGCGTCTATGCATCTGCATGTAAAGTC
AACGAGTGACCTCGAAGAGGCGCAAGCAGCGATGCAGCAGGCGAGTCCAG
CAGCTCTTTCGCTAGGGTCTTGATGTACATCTGAACATATAGACGGTGAT
TACGAGGGAGCAAATGTGCCTGTAGCTGTTGAGCGCGTATTTGGTGTTGT
TCGGTATAAGAGGGGGACAATAGAGACCGCTAAAAGACTTGGCCCGCCCC
TCATCATCACGCCATGCCTCCCCTCCCCTCTCAATCGTCCATCATCACAC
TTGCTATCTCCTTCACTTTACTCACACCACACCCACGGCCACACCGACCC
TTCCCGCACACAGCTATGCTCTCCACTGTCTTGAGAAGAACATGCACCGC
TGGCAGCAGCGGCAGACCTGTGGGCGGAACGGCAGCCCTCCACATGTGCA
GATCACCACAGGCATCATCATTAGCATTAGCTGCAGGGGTAGCGGGACGT
TCCTGCCGCGCCGCCTTTAACACCCAGTCCTCCTCCTCCAGCTCCTCCCT
GAGTCTCAATAATCTCAGTGACAACCCAGGGGCCAAGACTGAGCGCACAC
GTGTAGGTCGGGGTTGCGGTTCAGGAAAGGGCAAAACGGCTGGGCGGGGA
ATGAATGGACAAAAGAAGCGATCAAGCGTGAACATTCCTCAAGGCTTCGA
AGGCGGGCAAACCCCCTTACACCGCCGCCTACCCAAGACAGGATTTAAAA
ACATCTGGGCTGAGCCCCTCACACCTCTTCACGTCGGCGAGCTCCAAAAC
TGGGTAGATATGGGCCGTCTCTCCGTCCCTCCCAACCGTCTGGTGACGAT
GAAGGACCTCGTTGACGCCGGCCTTTTCAAGGCGAACAAGATCAAGCACG
GGATAAAGCTCCTGGCCCGCGGTGGGGAACACGTTCATACCCCGATCCAC
CTAGAAGTCTCTCGGGCGTCTGCTGCGGCGATCGAGGCCGTGGAAAAAGT
GGGAGGGACGATAACGTGCGTGCATTTCAATCGGTTGGCCCTCCGTGCGC
TCTTGAAGCCAGAAGCATTTGTGGTGCCGGTATTGGGAGAGGGAGGGGAG
GTAGAGGAGAGGCTGCAGCTGCCTCGACGGGCAAGGCCGCCTCCGAAGCT
GATGCCACTGTATTTGGACTCTGATCGAAGGGGTTATTTGTCTCCGGAGG
TGCAGATGAGAAATAGGACGCTGTTTGGGGGACAGGTGACAAGCGAGAGG
GTGCCGGAGTTGGCGCATGAGTAGGAAGTGGGAGAAAATTTTTAGCATAC
ACGGAGGCATGATAGAACGAAGAGAAAGGAAACTAGGGAGGAGGGCTTCG
GCTTTTAGGGAAATATGCGACCGAAAAGATTGCTGCAAAAGTGCATGTGC
TGTATTTCGCG
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protein sequence of NO09G03610.1

>NO09G03610.1-protein ID=NO09G03610.1-protein|Name=NO09G03610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=337bp
MPPLPSQSSIITLAISFTLLTPHPRPHRPFPHTAMLSTVLRRTCTAGSSG
RPVGGTAALHMCRSPQASSLALAAGVAGRSCRAAFNTQSSSSSSSLSLNN
LSDNPGAKTERTRVGRGCGSGKGKTAGRGMNGQKKRSSVNIPQGFEGGQT
PLHRRLPKTGFKNIWAEPLTPLHVGELQNWVDMGRLSVPPNRLVTMKDLV
DAGLFKANKIKHGIKLLARGGEHVHTPIHLEVSRASAAAIEAVEKVGGTI
TCVHFNRLALRALLKPEAFVVPVLGEGGEVEERLQLPRRARPPPKLMPLY
LDSDRRGYLSPEVQMRNRTLFGGQVTSERVPELAHE*
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mRNA from alignment at chr9:1035892..1037664-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G03610.1 ID=NO09G03610.1|Name=NO09G03610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1773bp|location=Sequence derived from alignment at chr9:1035892..1037664- (Nannochloropsis oceanica)
ACGAAAAGCACTACCAAGGCCTGTGAACGGTGTGTGCAGCGGTGTGTGGG
GAATGTCGCTTAGTCGGAGCATGTGCGTCTATGCATCTGCATGTAAAGTC
AACGAGTGACCTCGAAGAGGCGCAAGCAGCGATGCAGCAGGCGAGTCCAG
CAGCTCTTTCGCTAGGGTCTTGATGTACATCTGAACATATAGACGGTGAT
TACGAGGGAGCAAATGTGCCTGTAGCTGTTGAGCGCGTATTTGGTGTTGT
TCGGTATAAGAGGGGGACAATAGAGACCGCTAAAAGACTTGGCCCGCCCC
TCATCATCACGCCATGCCTCCCCTCCCCTCTCAATCGTCCATCATCACAC
TTGCTATCTCCTTCACTTTACTCACACCACACCCACGGCCACACCGACCC
TTCCCGCACACAGCTATGCTCTCCACTGTCTTGAGAAGAACATGCACCGC
TGGCAGCAGCGGCAGACCTGTGGGCGGAACGGCAGCCCTCCACATGTGCA
GATCACCACAGGCATCATCATTAGCATTAGCTGCAGGGGTAGCGGGACGT
TCCTGCCGCGCCGCCTTTAACACCCAGTCCTCCTCCTCCAGCTCCTCCCT
GAGTCTCAATAATCTCAGTGACAACCCAGGGGCCAAGACTGAGGTAGGTG
GGGTGTGGTATGTATGTGTGTGGAGAGCCGCTAAGCGACTTCCCGTCAGC
GTCGTTGCCACCATCTCCATACGCAGGACGCTCACTCTTCTTCCTATCTT
CCACTCCTATCATATACCTCCATCCGTGCTCTCTGTAAAATTAGCGCACA
CGTGTAGGTCGGGGTTGCGGTTCAGGAAAGGGCAAAACGGCTGGGCGGGG
AATGAATGGACAAAAGAAGCGATCAAGCGTGAACATTCCTCAAGGCTTCG
AAGGCGGGCAAACCCCCTTACACCGCCGCCTACCCAAGACAGGATTTAAA
AACATGTACGCTTTTTTGGTTCTCGTCATAAGTCTTGATTGTCGCTTCGT
AAAGATCTCGCTGCATAACGTGATGCACGTGGAGATTGTGCTATGCACCT
CCTCTTTCGATCACCCATCTTCGTCCTTTCACTCACTTCCATCTCCCAAA
ACTCAACACTCAACAGCTGGGCTGAGCCCCTCACACCTCTTCACGTCGGC
GAGCTCCAAAACTGGGTAGATATGGGCCGTCTCTCCGTCCCTCCCAACCG
TCTGGTGACGATGAAGGACCTCGTTGACGCCGGCCTTTTCAAGGCGAACA
AGATCAAGCACGGGATAAAGCTCCTGGCCCGCGGTGGGGAACACGTTCAT
ACCCCGATCCACCTAGAAGTCTCTCGGGCGTCTGCTGCGGCGATCGAGGC
CGTGGAAAAAGTGGGAGGGACGATAACGTGCGTGCATTTCAATCGGTTGG
CCCTCCGTGCGCTCTTGAAGCCAGAAGCATTTGTGGTGCCGGTATTGGGA
GAGGGAGGGGAGGTAGAGGAGAGGCTGCAGCTGCCTCGACGGGCAAGGCC
GCCTCCGAAGCTGATGCCACTGTATTTGGACTCTGATCGAAGGGGTTATT
TGTCTCCGGAGGTGCAGATGAGAAATAGGACGCTGTTTGGGGGACAGGTG
ACAAGCGAGAGGGTGCCGGAGTTGGCGCATGAGTAGGAAGTGGGAGAAAA
TTTTTAGCATACACGGAGGCATGATAGAACGAAGAGAAAGGAAACTAGGG
AGGAGGGCTTCGGCTTTTAGGGAAATATGCGACCGAAAAGATTGCTGCAA
AAGTGCATGTGCTGTATTTCGCG
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Coding sequence (CDS) from alignment at chr9:1035892..1037664-

>NO09G03610.1 ID=NO09G03610.1|Name=NO09G03610.1|organism=Nannochloropsis oceanica|type=CDS|length=1011bp|location=Sequence derived from alignment at chr9:1035892..1037664- (Nannochloropsis oceanica)
ATGCCTCCCCTCCCCTCTCAATCGTCCATCATCACACTTGCTATCTCCTT
CACTTTACTCACACCACACCCACGGCCACACCGACCCTTCCCGCACACAG
CTATGCTCTCCACTGTCTTGAGAAGAACATGCACCGCTGGCAGCAGCGGC
AGACCTGTGGGCGGAACGGCAGCCCTCCACATGTGCAGATCACCACAGGC
ATCATCATTAGCATTAGCTGCAGGGGTAGCGGGACGTTCCTGCCGCGCCG
CCTTTAACACCCAGTCCTCCTCCTCCAGCTCCTCCCTGAGTCTCAATAAT
CTCAGTGACAACCCAGGGGCCAAGACTGAGCGCACACGTGTAGGTCGGGG
TTGCGGTTCAGGAAAGGGCAAAACGGCTGGGCGGGGAATGAATGGACAAA
AGAAGCGATCAAGCGTGAACATTCCTCAAGGCTTCGAAGGCGGGCAAACC
CCCTTACACCGCCGCCTACCCAAGACAGGATTTAAAAACATCTGGGCTGA
GCCCCTCACACCTCTTCACGTCGGCGAGCTCCAAAACTGGGTAGATATGG
GCCGTCTCTCCGTCCCTCCCAACCGTCTGGTGACGATGAAGGACCTCGTT
GACGCCGGCCTTTTCAAGGCGAACAAGATCAAGCACGGGATAAAGCTCCT
GGCCCGCGGTGGGGAACACGTTCATACCCCGATCCACCTAGAAGTCTCTC
GGGCGTCTGCTGCGGCGATCGAGGCCGTGGAAAAAGTGGGAGGGACGATA
ACGTGCGTGCATTTCAATCGGTTGGCCCTCCGTGCGCTCTTGAAGCCAGA
AGCATTTGTGGTGCCGGTATTGGGAGAGGGAGGGGAGGTAGAGGAGAGGC
TGCAGCTGCCTCGACGGGCAAGGCCGCCTCCGAAGCTGATGCCACTGTAT
TTGGACTCTGATCGAAGGGGTTATTTGTCTCCGGAGGTGCAGATGAGAAA
TAGGACGCTGTTTGGGGGACAGGTGACAAGCGAGAGGGTGCCGGAGTTGG
CGCATGAGTAG
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Synonyms
Publications