NO09G03590.1, NO09G03590.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G03590.1
Unique NameNO09G03590.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2186
Alignment locationchr9:1028604..1030789 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1028604..1030789 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G03590.1 vs.
Match: EWM27450.1 (hypothetical protein Naga_100107g14 [Nannochloropsis gaditana])

HSP 1 Score: 535.4 bits (1378), Expect = 1.500e-148
Identity = 265/418 (63.40%), Postives = 307/418 (73.44%), Query Frame = 0 
Query:    1 MDRLTRRAGVKAPMTSSSSSSSSSSAFSSYSSLSSPFNAAWFSDKSWPMPPQSRSKAVWISLILSSFGIFLVLTFSSRDTRSDSSSFTGI----IQSLQQLMMSVPPNHWSHLPHKRLLVTQFASGDRAQQFNKNWRNHEEKFMKQQQDASLLLACPADDRQTLMDQVVLHNNWTLVGSWDHAHSFAHGPLLQYRTPGEGIDVFFQPMNLSFPKYYEESDPKPIPICAKGRHFSWQYALYSGAVFAYQMIHLPFLDRYDYFMKIDGDLTFGDSFPLDIGADMEQRGCMVGHAAIHGSGDCEARNLEALLAADEALGWPKPKSLAYHWCNEDGKGEKGNLMFFGNFAVYRTKGFLLSPEIQSISRYMYEEWRDGYYTHRWGDQGPFVMFACQMLDVPDLEKDAKICSYAELRESKMIVH 415
            MD LT R GVK P  +S+   +SS +  S+S + S F   W   K   +   +RSKA    ++L+  G       S     ++S     I    ++SL+Q M  VP NHWS LPHKRLLVTQFAS   A QF   W NHE KFMK QQDASLLLACPA D+  L+ +V+    W  VGSW+H H FAHGPLLQYRTP EGIDVFFQPMNL FPKYY ES PKPIP CA GR FSWQYALYSGAVFAYQ+IHLPFL RYDYFMKIDGDL+FG +FP D+GADM  R C+V H+AIHGS DCE +NL ALLAAD+ALGWP+PKSLAY WCN++G+G KG+LMFFGNF  Y+T+GFLLSP+I SISRYMYEEW+DGYY HRWGDQGPFVM+ACQMLDVPDL  DA+ICSYA  RE  ++ H
Sbjct:    1 MDGLTHRVGVKQP--ASAPDYTSSFSVPSFSVIPS-FAKNWLWGKRRRLLSWNRSKAFQAGILLAFLGTLSWCILSPATPHAESRLGPPISVSYVESLRQAMGWVPANHWSRLPHKRLLVTQFASASHAAQFRSTWENHESKFMKVQQDASLLLACPAADKSRLLQEVIERQKWQYVGSWEHDHPFAHGPLLQYRTPKEGIDVFFQPMNLHFPKYYNESHPKPIPTCAGGRPFSWQYALYSGAVFAYQLIHLPFLARYDYFMKIDGDLSFGRTFPFDLGADMAARKCIVAHSAIHGSVDCEDQNLAALLAADKALGWPEPKSLAYSWCNKNGEGRKGDLMFFGNFQAYKTQGFLLSPQILSISRYMYEEWKDGYYKHRWGDQGPFVMYACQMLDVPDLSDDARICSYANFREDGLLNH 415
The following BLAST results are available for this feature:
BLAST of NO09G03590.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27450.11.500e-14863.40hypothetical protein Naga_100107g14 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G03590NO09G03590Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G03590.1NO09G03590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G03590.1.cds1NO09G03590.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G03590.1 ID=NO09G03590.1|Name=NO09G03590.1|organism=Nannochloropsis oceanica|type=mRNA|length=2186bp
CCCCTCCAAAAAAAGAAACTCAAACGGACACTTTTCCTCTTGGTCTTCCC
CTGCATCTTCACACATCACACACCATTACACAAATCATTTTCCATGTGTG
CACCTGGCGTACATGTTCTCCTTTTACTTCCTTCTTCCCCATCCCTCTAT
TTTCCTAGGACTCACACAACAAAAACACATCTATGTCTGCCCATAGAGTG
GGCGTACCCGCTTTTTTTAATGCATATAATATTCCCCATGGTTCTCATGA
TGATTAAAGCTGAAATGAGTGCATGATTATACTTTGTACCAGAACGCCAA
TAATCTGTATGTGTGCTTTTCAAAGGCTGTGGGGTCTTTGCACTTTTTTG
TTTTTGCCCCCCCATGGCACTCCTCCCTCCCACATCGTCTCCAGTTGATG
CAGCAGCTGCTGCATCTCTGCCACTGCTGCCTCGCCCTCTTTCCAACCTT
ACCCTGTATAGCAGCACAAAGTCATTGTAAATAACATTCTTTATTGCAAT
TTCGATCGCTTACGGTGGGTTTGTCCTTTATGCGCCGCCAGCAACTTCCC
TCGCGGATTTACGAAGCCCATGATGGGCCATTCTCACTGATACACGTCCA
TCGCCCTCTTCCCCAAAACCATGGATGCTGTGTCTTTGGATGCAGGCTCA
ATGCACTATAATCTATTAGTGATATAGGTCGGTTGGTTTCTCACCTGCTC
CCTTCAAACTTACAAACTCCTGCTCACAAATCACATGACAAGGATTAGCA
CTGCTGTGTAGAACACATACAGCAAGCCTGAGGACAGCAGCCACATGGAT
AGACTGACACGTCGGGCAGGGGTCAAGGCCCCGATGACATCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCGCCTTCTCCTCCTACTCTTCCCTCTCCTCCC
CCTTCAATGCAGCCTGGTTCTCGGACAAGTCGTGGCCCATGCCACCACAA
AGTCGATCCAAGGCGGTTTGGATCAGCTTGATTTTGTCTTCCTTTGGCAT
ATTTCTGGTACTTACTTTCAGTAGCAGAGACACGCGCTCTGATTCCTCTT
CTTTCACCGGCATAATCCAATCGCTGCAGCAGCTCATGATGTCCGTGCCC
CCGAACCACTGGAGCCACCTACCCCACAAGCGGCTGCTAGTCACGCAGTT
TGCCTCAGGGGATCGGGCCCAACAATTTAATAAGAATTGGCGCAACCACG
AGGAGAAATTTATGAAGCAGCAACAGGACGCTTCTCTTCTCCTGGCCTGC
CCGGCCGACGACCGACAAACGCTTATGGATCAAGTGGTGCTACACAATAA
TTGGACGCTGGTAGGGAGCTGGGACCACGCCCATTCTTTTGCCCATGGAC
CTTTGCTGCAATATCGAACTCCGGGGGAAGGCATTGACGTGTTTTTCCAA
CCGATGAATTTGAGTTTTCCTAAGTATTATGAGGAGAGTGACCCTAAGCC
CATCCCTATCTGTGCGAAGGGGCGGCATTTCAGTTGGCAGTACGCCTTGT
ACAGTGGGGCTGTCTTCGCGTATCAAATGATTCACCTGCCATTCTTAGAC
AGATACGATTATTTTATGAAAATTGACGGAGATTTGACTTTTGGCGACTC
TTTCCCCCTTGATATTGGAGCAGACATGGAGCAACGAGGGTGTATGGTAG
GCCACGCGGCCATTCACGGCTCAGGGGATTGCGAAGCACGGAATTTAGAG
GCGTTGCTGGCGGCGGATGAGGCGTTGGGGTGGCCGAAACCCAAGAGTTT
GGCCTACCATTGGTGCAATGAAGATGGGAAGGGAGAGAAAGGCAACTTAA
TGTTCTTTGGAAACTTCGCGGTATATCGGACGAAGGGCTTTCTGCTATCT
CCGGAGATTCAAAGTATCAGCAGGTACATGTATGAGGAGTGGAGGGATGG
TTATTACACGCATCGATGGGGAGATCAAGGCCCCTTTGTAATGTTTGCTT
GCCAGATGCTGGATGTGCCGGACTTGGAGAAGGATGCAAAGATCTGCTCG
TATGCCGAGCTAAGGGAGAGTAAAATGATTGTGCATTAAGGAGAAGGCAG
GGAGAGATGGGGGGAATAGAGGGGGTAATGGCATGTAGAGACGCTACGCA
GACAAAGAGGGGGTTGACGTGGTTGCGCACATTTACACACATATATTTCA
TACGGCGACAAGGAAGAAATAAATAGCTGCCAAAAC
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protein sequence of NO09G03590.1

>NO09G03590.1-protein ID=NO09G03590.1-protein|Name=NO09G03590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=415bp
MDRLTRRAGVKAPMTSSSSSSSSSSAFSSYSSLSSPFNAAWFSDKSWPMP
PQSRSKAVWISLILSSFGIFLVLTFSSRDTRSDSSSFTGIIQSLQQLMMS
VPPNHWSHLPHKRLLVTQFASGDRAQQFNKNWRNHEEKFMKQQQDASLLL
ACPADDRQTLMDQVVLHNNWTLVGSWDHAHSFAHGPLLQYRTPGEGIDVF
FQPMNLSFPKYYEESDPKPIPICAKGRHFSWQYALYSGAVFAYQMIHLPF
LDRYDYFMKIDGDLTFGDSFPLDIGADMEQRGCMVGHAAIHGSGDCEARN
LEALLAADEALGWPKPKSLAYHWCNEDGKGEKGNLMFFGNFAVYRTKGFL
LSPEIQSISRYMYEEWRDGYYTHRWGDQGPFVMFACQMLDVPDLEKDAKI
CSYAELRESKMIVH*
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mRNA from alignment at chr9:1028604..1030789-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G03590.1 ID=NO09G03590.1|Name=NO09G03590.1|organism=Nannochloropsis oceanica|type=mRNA|length=2186bp|location=Sequence derived from alignment at chr9:1028604..1030789- (Nannochloropsis oceanica)
CCCCTCCAAAAAAAGAAACTCAAACGGACACTTTTCCTCTTGGTCTTCCC
CTGCATCTTCACACATCACACACCATTACACAAATCATTTTCCATGTGTG
CACCTGGCGTACATGTTCTCCTTTTACTTCCTTCTTCCCCATCCCTCTAT
TTTCCTAGGACTCACACAACAAAAACACATCTATGTCTGCCCATAGAGTG
GGCGTACCCGCTTTTTTTAATGCATATAATATTCCCCATGGTTCTCATGA
TGATTAAAGCTGAAATGAGTGCATGATTATACTTTGTACCAGAACGCCAA
TAATCTGTATGTGTGCTTTTCAAAGGCTGTGGGGTCTTTGCACTTTTTTG
TTTTTGCCCCCCCATGGCACTCCTCCCTCCCACATCGTCTCCAGTTGATG
CAGCAGCTGCTGCATCTCTGCCACTGCTGCCTCGCCCTCTTTCCAACCTT
ACCCTGTATAGCAGCACAAAGTCATTGTAAATAACATTCTTTATTGCAAT
TTCGATCGCTTACGGTGGGTTTGTCCTTTATGCGCCGCCAGCAACTTCCC
TCGCGGATTTACGAAGCCCATGATGGGCCATTCTCACTGATACACGTCCA
TCGCCCTCTTCCCCAAAACCATGGATGCTGTGTCTTTGGATGCAGGCTCA
ATGCACTATAATCTATTAGTGATATAGGTCGGTTGGTTTCTCACCTGCTC
CCTTCAAACTTACAAACTCCTGCTCACAAATCACATGACAAGGATTAGCA
CTGCTGTGTAGAACACATACAGCAAGCCTGAGGACAGCAGCCACATGGAT
AGACTGACACGTCGGGCAGGGGTCAAGGCCCCGATGACATCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCGCCTTCTCCTCCTACTCTTCCCTCTCCTCCC
CCTTCAATGCAGCCTGGTTCTCGGACAAGTCGTGGCCCATGCCACCACAA
AGTCGATCCAAGGCGGTTTGGATCAGCTTGATTTTGTCTTCCTTTGGCAT
ATTTCTGGTACTTACTTTCAGTAGCAGAGACACGCGCTCTGATTCCTCTT
CTTTCACCGGCATAATCCAATCGCTGCAGCAGCTCATGATGTCCGTGCCC
CCGAACCACTGGAGCCACCTACCCCACAAGCGGCTGCTAGTCACGCAGTT
TGCCTCAGGGGATCGGGCCCAACAATTTAATAAGAATTGGCGCAACCACG
AGGAGAAATTTATGAAGCAGCAACAGGACGCTTCTCTTCTCCTGGCCTGC
CCGGCCGACGACCGACAAACGCTTATGGATCAAGTGGTGCTACACAATAA
TTGGACGCTGGTAGGGAGCTGGGACCACGCCCATTCTTTTGCCCATGGAC
CTTTGCTGCAATATCGAACTCCGGGGGAAGGCATTGACGTGTTTTTCCAA
CCGATGAATTTGAGTTTTCCTAAGTATTATGAGGAGAGTGACCCTAAGCC
CATCCCTATCTGTGCGAAGGGGCGGCATTTCAGTTGGCAGTACGCCTTGT
ACAGTGGGGCTGTCTTCGCGTATCAAATGATTCACCTGCCATTCTTAGAC
AGATACGATTATTTTATGAAAATTGACGGAGATTTGACTTTTGGCGACTC
TTTCCCCCTTGATATTGGAGCAGACATGGAGCAACGAGGGTGTATGGTAG
GCCACGCGGCCATTCACGGCTCAGGGGATTGCGAAGCACGGAATTTAGAG
GCGTTGCTGGCGGCGGATGAGGCGTTGGGGTGGCCGAAACCCAAGAGTTT
GGCCTACCATTGGTGCAATGAAGATGGGAAGGGAGAGAAAGGCAACTTAA
TGTTCTTTGGAAACTTCGCGGTATATCGGACGAAGGGCTTTCTGCTATCT
CCGGAGATTCAAAGTATCAGCAGGTACATGTATGAGGAGTGGAGGGATGG
TTATTACACGCATCGATGGGGAGATCAAGGCCCCTTTGTAATGTTTGCTT
GCCAGATGCTGGATGTGCCGGACTTGGAGAAGGATGCAAAGATCTGCTCG
TATGCCGAGCTAAGGGAGAGTAAAATGATTGTGCATTAAGGAGAAGGCAG
GGAGAGATGGGGGGAATAGAGGGGGTAATGGCATGTAGAGACGCTACGCA
GACAAAGAGGGGGTTGACGTGGTTGCGCACATTTACACACATATATTTCA
TACGGCGACAAGGAAGAAATAAATAGCTGCCAAAAC
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Coding sequence (CDS) from alignment at chr9:1028604..1030789-

>NO09G03590.1 ID=NO09G03590.1|Name=NO09G03590.1|organism=Nannochloropsis oceanica|type=CDS|length=1245bp|location=Sequence derived from alignment at chr9:1028604..1030789- (Nannochloropsis oceanica)
ATGGATAGACTGACACGTCGGGCAGGGGTCAAGGCCCCGATGACATCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCGCCTTCTCCTCCTACTCTTCCCTCT
CCTCCCCCTTCAATGCAGCCTGGTTCTCGGACAAGTCGTGGCCCATGCCA
CCACAAAGTCGATCCAAGGCGGTTTGGATCAGCTTGATTTTGTCTTCCTT
TGGCATATTTCTGGTACTTACTTTCAGTAGCAGAGACACGCGCTCTGATT
CCTCTTCTTTCACCGGCATAATCCAATCGCTGCAGCAGCTCATGATGTCC
GTGCCCCCGAACCACTGGAGCCACCTACCCCACAAGCGGCTGCTAGTCAC
GCAGTTTGCCTCAGGGGATCGGGCCCAACAATTTAATAAGAATTGGCGCA
ACCACGAGGAGAAATTTATGAAGCAGCAACAGGACGCTTCTCTTCTCCTG
GCCTGCCCGGCCGACGACCGACAAACGCTTATGGATCAAGTGGTGCTACA
CAATAATTGGACGCTGGTAGGGAGCTGGGACCACGCCCATTCTTTTGCCC
ATGGACCTTTGCTGCAATATCGAACTCCGGGGGAAGGCATTGACGTGTTT
TTCCAACCGATGAATTTGAGTTTTCCTAAGTATTATGAGGAGAGTGACCC
TAAGCCCATCCCTATCTGTGCGAAGGGGCGGCATTTCAGTTGGCAGTACG
CCTTGTACAGTGGGGCTGTCTTCGCGTATCAAATGATTCACCTGCCATTC
TTAGACAGATACGATTATTTTATGAAAATTGACGGAGATTTGACTTTTGG
CGACTCTTTCCCCCTTGATATTGGAGCAGACATGGAGCAACGAGGGTGTA
TGGTAGGCCACGCGGCCATTCACGGCTCAGGGGATTGCGAAGCACGGAAT
TTAGAGGCGTTGCTGGCGGCGGATGAGGCGTTGGGGTGGCCGAAACCCAA
GAGTTTGGCCTACCATTGGTGCAATGAAGATGGGAAGGGAGAGAAAGGCA
ACTTAATGTTCTTTGGAAACTTCGCGGTATATCGGACGAAGGGCTTTCTG
CTATCTCCGGAGATTCAAAGTATCAGCAGGTACATGTATGAGGAGTGGAG
GGATGGTTATTACACGCATCGATGGGGAGATCAAGGCCCCTTTGTAATGT
TTGCTTGCCAGATGCTGGATGTGCCGGACTTGGAGAAGGATGCAAAGATC
TGCTCGTATGCCGAGCTAAGGGAGAGTAAAATGATTGTGCATTAA
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Synonyms
Publications