NO09G03250.1, NO09G03250.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G03250.1
Unique NameNO09G03250.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2529
Alignment locationchr9:940396..943285 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:940396..943285 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G03250.1 vs.
Match: EWM27476.1 (transcription initiation factor tfiid subunit [Nannochloropsis gaditana])

HSP 1 Score: 388.3 bits (996), Expect = 4.000e-104
Identity = 211/322 (65.53%), Postives = 242/322 (75.16%), Query Frame = 0 
Query:  238 MTPSTPEREKRHFFAALGSETGLHELVPYLSLHVHNTVTHAVGAGGRGPLDPLWAAMRIFRCMVVNPNMHLELYLHQMLPSVMTVIANNRLAATSVSAAAAAAV---------------GGGERGGEN-GDHYALRIFAAQTLAMLVRTYGGVYRPLASVICKTFAERVEEFLGVEPAGKGALATLYGTITGIVHLGARPVEVVLLPVAGQVLGRLKGIMEDRGVKLRKRVEAQNCYSALVAAVGEARERRMGEPLAAVRIEMLGGIGVGVGVGGVGGGGEGDEGRDGGGRVEGNWKGTIAAESLVPFAAQSLAYPEHLLAL 544
            M+P+TPE E+R ++  +G+ETGLHELVPYLSLH+HNTVT AVGAGGRG LDPLWA MR+FRCMVVNP+MHL+LYLHQMLP VMTVIANNRL +     A  AA                G G+ GG+  GDHYALR FAAQTLAMLVR Y GVYRPLASVICKTFAERV+EFL VEP  KGALATLYGTI GI HLG +PVEVVL+PVAGQ+L RLKGIMEDRGVKLRKR+EAQ+CY+ALV AVGEARER + + L+A R+   G +GV V + G    G  D    G G     W+G I AE+ +P+AAQSL YPE LL L
Sbjct:    1 MSPATPEAERRAYYVGVGTETGLHELVPYLSLHIHNTVTAAVGAGGRGSLDPLWAVMRVFRCMVVNPHMHLDLYLHQMLPGVMTVIANNRLGSHGEGVAGLAASKETKGGRGADWKAGNGWGQTGGDGAGDHYALRSFAAQTLAMLVRKYSGVYRPLASVICKTFAERVDEFLSVEPPDKGALATLYGTIVGIRHLGVKPVEVVLIPVAGQLLERLKGIMEDRGVKLRKRMEAQHCYTALVPAVGEAREREVKKTLSAERVVSFGEVGVEVELNGEKNEGGRDGKTTGLGITGEQWEGRIGAEAFLPYAAQSLCYPELLLVL 322
The following BLAST results are available for this feature:
BLAST of NO09G03250.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27476.14.000e-10465.53transcription initiation factor tfiid subunit [Nan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G03250NO09G03250Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G03250.1NO09G03250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G03250.1.cds1NO09G03250.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03250.1.cds2NO09G03250.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03250.1.cds3NO09G03250.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G03250.1 ID=NO09G03250.1|Name=NO09G03250.1|organism=Nannochloropsis oceanica|type=mRNA|length=2529bp
CTGACCCTTTTGGTCGGTCCCCGAATCCACCGTCCCCTCGCTGTCCCGTG
CGCTCACGCCTAGCCTCGTCTTTCTCGGCAAGGCTTGGGACATCACCATC
ATCATTAACTGGACGCTCCCCCCATCTTGTCTCTTTCCCTCGTCCTTGTT
CTCTTCGAGGAGGGGATGGCCACGCTTTATCCCTCCTCTCCTCTCTCCTT
GCCCGATCAGTGTCCCTATCCCTGTCTCGGCCCTCCCTCCCTCTCCTCCT
GCTGCTGCTGGAGCTGCTTTCCTCTCCATATCTGCCTCTTTCCCTCTCCC
TTGAACTATGGCCACGATGCCGTGAAGAGGATAATGGACGAGGGCTGTAA
GACTTGCTCCTGCTTCGTCTTGTAGGGCTCCGGCTGCGACTGCGTGGCAT
GAATTGGGAGGGAGTGGCGAGTCCCGTCGCGATTGTAACCCTCGTTTGCG
CAGTGCCTGTGGGCGGGAGGAAGGACGATGGATAGAGATACAGTGGGTCA
GTAGATTGAGGAAAATATTGACATGATTGGATATGTGCGTCGTAATGTGC
ATACGGACCGGTTTGTGTCTGTGCGAAGAATAGAAGAGGCAAGCAAGGGG
AGGAGGCGATGACGATGAGATGCCGCACTTCTTTTGCCAAGAGAGCTCTC
CTTCCTGACCCATTTGCATCGCATTAACCCCACCCATAGGTACAGCATCA
GTACATCTTGCTGCCAAGCCTTCCTCTGCTTCTCCGGCCAACGCGGCCAG
TTAAATTATCACCCCCTCCCCCTCCCCTCCTTCACTCTTCGCCTCCCCTC
CTTTCCCATTCTTCACACACAGCCAGCATCACGGACGATGCAGAAAGGCG
GGGGCAAAGGCTCCGCCCTCACCGCCACCGCGAGTAATGCGAGTCGGGGG
TCCATGGCTACCACTGCTTCCATCCAATCATCAGCCAAAAAGAAGGGGAA
ACTGACACCAGCGGCGGCAAGTGCGGACCCCGTTGGACCTACAGGCCTCA
TCCCACCAGAAGCCATCCAGGCCGCGGCCAAGGAGCTGCATATGGCCGAG
GTAAAGGCAGAAGTCGCCTCCTTCATCGCCACCACCGTCGAATACCATCT
ACGTGAAGTCCTGGAAGATGCCATCAAAGTCCAAACTCAAAGCCGCCGTC
GTATCCTAACGGTTGATGACCTTACGGTTGCCATGCGCTTGCGTGGGCAA
CAGCCTATATATGGGTACGGCGCAGGAGCCCAGGCCATGCGGGATGTGAC
GACTGTAGATGGAAGACAGAGTCAAGTGATTCTCTCCGAGTTGGGGGAGA
GGAGGGAGGCGCTGGTGGAGGCCATGCAAACGGAGTTGCCCAAGGTTCCC
CGAGAAGTCGGCCTCCTCCTTCACTGGCTCGCCATCGACGGCACACAGCC
CCTCATTCCCCAAAACCCTCCCCCAATTCTCCTCTCCTCCACCCCTGCCC
CTCTCGAAGTCGAAGGCGGCGCCCTCGTCATCCCTGAGAAGACCCACCCT
CTCTCCCAAGAATTGTGGCATTACTACAAAAAAATAGTCCAAGGCCTCAT
GACACCCAGCACACCCGAAAGAGAAAAACGACACTTTTTCGCTGCCCTTG
GGAGCGAGACGGGGCTACACGAACTGGTGCCGTATCTATCATTGCATGTC
CATAACACTGTGACGCATGCTGTGGGGGCAGGGGGAAGAGGGCCGTTGGA
CCCGCTCTGGGCGGCTATGAGGATATTTCGGTGCATGGTAGTGAATCCGA
ACATGCACTTGGAGCTGTATTTGCACCAGATGCTACCGTCAGTGATGACG
GTGATCGCCAATAATAGGCTGGCGGCGACGAGTGTCAGTGCTGCTGCAGC
GGCGGCAGTGGGAGGAGGAGAAAGAGGAGGAGAAAACGGGGACCATTACG
CGTTGAGGATTTTTGCGGCCCAGACACTGGCGATGCTTGTGAGGACGTAT
GGGGGCGTATACAGGCCGTTGGCGAGTGTGATTTGTAAAACGTTCGCAGA
GAGGGTGGAGGAGTTTCTAGGCGTAGAGCCGGCAGGGAAAGGAGCGCTGG
CTACCCTGTACGGGACCATCACAGGGATCGTGCATTTAGGTGCAAGGCCC
GTGGAAGTGGTGTTGTTGCCGGTGGCGGGGCAGGTGTTGGGGAGGTTGAA
GGGGATTATGGAGGACAGGGGGGTAAAGCTACGGAAGAGGGTGGAGGCGC
AGAATTGTTATAGTGCTTTGGTGGCGGCAGTGGGGGAAGCAAGGGAACGG
AGGATGGGGGAACCCTTAGCGGCGGTGAGGATTGAGATGTTAGGCGGTAT
CGGAGTGGGAGTTGGGGTGGGAGGAGTAGGGGGAGGAGGGGAAGGGGATG
AGGGAAGAGATGGTGGTGGTAGGGTTGAAGGGAATTGGAAGGGGACTATC
GCGGCAGAGTCGTTGGTGCCATTTGCAGCGCAGAGCCTGGCATACCCTGA
GCATTTGTTGGCATTGTAACGTAAGTACGAGGAAGATGATCACAGTCAAA
AAGAAAGAATATCAAAAGTAGGAGCACGT
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protein sequence of NO09G03250.1

>NO09G03250.1-protein ID=NO09G03250.1-protein|Name=NO09G03250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=544bp
MQKGGGKGSALTATASNASRGSMATTASIQSSAKKKGKLTPAAASADPVG
PTGLIPPEAIQAAAKELHMAEVKAEVASFIATTVEYHLREVLEDAIKVQT
QSRRRILTVDDLTVAMRLRGQQPIYGYGAGAQAMRDVTTVDGRQSQVILS
ELGERREALVEAMQTELPKVPREVGLLLHWLAIDGTQPLIPQNPPPILLS
STPAPLEVEGGALVIPEKTHPLSQELWHYYKKIVQGLMTPSTPEREKRHF
FAALGSETGLHELVPYLSLHVHNTVTHAVGAGGRGPLDPLWAAMRIFRCM
VVNPNMHLELYLHQMLPSVMTVIANNRLAATSVSAAAAAAVGGGERGGEN
GDHYALRIFAAQTLAMLVRTYGGVYRPLASVICKTFAERVEEFLGVEPAG
KGALATLYGTITGIVHLGARPVEVVLLPVAGQVLGRLKGIMEDRGVKLRK
RVEAQNCYSALVAAVGEARERRMGEPLAAVRIEMLGGIGVGVGVGGVGGG
GEGDEGRDGGGRVEGNWKGTIAAESLVPFAAQSLAYPEHLLAL*
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mRNA from alignment at chr9:940396..943285-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G03250.1 ID=NO09G03250.1|Name=NO09G03250.1|organism=Nannochloropsis oceanica|type=mRNA|length=2890bp|location=Sequence derived from alignment at chr9:940396..943285- (Nannochloropsis oceanica)
CTGACCCTTTTGGTCGGTCCCCGAATCCACCGTCCCCTCGCTGTCCCGTG
CGCTCACGCCTAGCCTCGTCTTTCTCGGCAAGGCTTGGGACATCACCATC
ATCATTAACTGGACGCTCCCCCCATCTTGTCTCTTTCCCTCGTCCTTGTT
CTCTTCGAGGAGGGGATGGCCACGCTTTATCCCTCCTCTCCTCTCTCCTT
GCCCGATCAGTGTCCCTATCCCTGTCTCGGCCCTCCCTCCCTCTCCTCCT
GCTGCTGCTGGAGCTGCTTTCCTCTCCATATCTGCCTCTTTCCCTCTCCC
TTGAACTATGGCCACGATGCCGTGAAGAGGATAATGGACGAGGGCTGTAA
GACTTGCTCCTGCTTCGTCTTGTAGGGCTCCGGCTGCGACTGCGTGGCAT
GAATTGGGAGGGAGTGGCGAGTCCCGTCGCGATTGTAACCCTCGTTTGCG
CAGTGCCTGTGGGCGGGAGGAAGGACGATGGATAGAGATACAGTGGGTCA
GTAGATTGAGGAAAATATTGACATGATTGGATATGTGCGTCGTAATGTGC
ATACGGACCGGTTTGTGTCTGTGCGAAGAATAGAAGAGGCAAGCAAGGGG
AGGAGGCGATGACGATGAGATGCCGCACTTCTTTTGCCAAGAGAGCTCTC
CTTCCTGACCCATTTGCATCGCATTAACCCCACCCATAGGTACAGCATCA
GTACATCTTGCTGCCAAGCCTTCCTCTGCTTCTCCGGCCAACGCGGCCAG
TTAAATTATCACCCCCTCCCCCTCCCCTCCTTCACTCTTCGCCTCCCCTC
CTTTCCCATTCTTCACACACAGCCAGCATCACGGACGATGCAGAAAGGCG
GGGGCAAAGGCTCCGCCCTCACCGCCACCGCGAGTAATGCGAGTCGGGGG
TCCATGGCTACCACTGCTTCCATCCAATCATCAGCCAAAAAGAAGGGGAA
ACTGACACCAGCGGCGGCAAGTGCGGACCCCGTTGGACCTACAGGCCTCA
TCCCACCAGAAGCCATCCAGGCCGCGGCCAAGGAGCTGCATATGGCCGAG
GTACGCAGGCATAGAGATGCAATGAAGCAGGGGGGGTAGGGCGGAGTAGC
CTCGGTGGGACACAATAGTGCACAAGCATTGTATTCAGTCCTCCCTCCCT
CCCCTGCCCTCCCCCCTGCCCTCCTCTTCCACCACATTAGGTAAAGGCAG
AAGTCGCCTCCTTCATCGCCACCACCGTCGAATACCATCTACGTGAAGTC
CTGGAAGATGCCATCAAAGTCCAAACTCAAAGCCGCCGTCGTATCCTAAC
GGTTGATGACCTTACGGTTGCCATGCGCTTGCGTGGGCAACAGCCTATAT
ATGGGTACGGCGCAGGAGCCCAGGCCATGCGGGATGTGACGACTGTAGAT
GGAAGACAGAGTCAAGTGATTCTCTCCGAGTTGGGGGAGAGGAGGGAGGC
GCTGGTGGAGGCCATGCAAACGGAGTTGCCCAAGGTAGGGGGGGAAGGAG
GGAAGGAGGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGCAGTGCGCGATTGTTGACTGGTTGGTGGTTATCTTTATCGGTAG
AAGTAGGAAAAAAGCGACTGTCTAAACAAACTCTCAAATTCTCCCTTGCC
TCCTTTCCTCCCTCCCTCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTAGGTTCCCCGAGAAGTCGGCCTCCTCCTTCACTGGCTCGCCATCGAC
GGCACACAGCCCCTCATTCCCCAAAACCCTCCCCCAATTCTCCTCTCCTC
CACCCCTGCCCCTCTCGAAGTCGAAGGCGGCGCCCTCGTCATCCCTGAGA
AGACCCACCCTCTCTCCCAAGAATTGTGGCATTACTACAAAAAAATAGTC
CAAGGCCTCATGACACCCAGCACACCCGAAAGAGAAAAACGACACTTTTT
CGCTGCCCTTGGGAGCGAGACGGGGCTACACGAACTGGTGCCGTATCTAT
CATTGCATGTCCATAACACTGTGACGCATGCTGTGGGGGCAGGGGGAAGA
GGGCCGTTGGACCCGCTCTGGGCGGCTATGAGGATATTTCGGTGCATGGT
AGTGAATCCGAACATGCACTTGGAGCTGTATTTGCACCAGATGCTACCGT
CAGTGATGACGGTGATCGCCAATAATAGGCTGGCGGCGACGAGTGTCAGT
GCTGCTGCAGCGGCGGCAGTGGGAGGAGGAGAAAGAGGAGGAGAAAACGG
GGACCATTACGCGTTGAGGATTTTTGCGGCCCAGACACTGGCGATGCTTG
TGAGGACGTATGGGGGCGTATACAGGCCGTTGGCGAGTGTGATTTGTAAA
ACGTTCGCAGAGAGGGTGGAGGAGTTTCTAGGCGTAGAGCCGGCAGGGAA
AGGAGCGCTGGCTACCCTGTACGGGACCATCACAGGGATCGTGCATTTAG
GTGCAAGGCCCGTGGAAGTGGTGTTGTTGCCGGTGGCGGGGCAGGTGTTG
GGGAGGTTGAAGGGGATTATGGAGGACAGGGGGGTAAAGCTACGGAAGAG
GGTGGAGGCGCAGAATTGTTATAGTGCTTTGGTGGCGGCAGTGGGGGAAG
CAAGGGAACGGAGGATGGGGGAACCCTTAGCGGCGGTGAGGATTGAGATG
TTAGGCGGTATCGGAGTGGGAGTTGGGGTGGGAGGAGTAGGGGGAGGAGG
GGAAGGGGATGAGGGAAGAGATGGTGGTGGTAGGGTTGAAGGGAATTGGA
AGGGGACTATCGCGGCAGAGTCGTTGGTGCCATTTGCAGCGCAGAGCCTG
GCATACCCTGAGCATTTGTTGGCATTGTAACGTAAGTACGAGGAAGATGA
TCACAGTCAAAAAGAAAGAATATCAAAAGTAGGAGCACGT
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Coding sequence (CDS) from alignment at chr9:940396..943285-

>NO09G03250.1 ID=NO09G03250.1|Name=NO09G03250.1|organism=Nannochloropsis oceanica|type=CDS|length=1632bp|location=Sequence derived from alignment at chr9:940396..943285- (Nannochloropsis oceanica)
ATGCAGAAAGGCGGGGGCAAAGGCTCCGCCCTCACCGCCACCGCGAGTAA
TGCGAGTCGGGGGTCCATGGCTACCACTGCTTCCATCCAATCATCAGCCA
AAAAGAAGGGGAAACTGACACCAGCGGCGGCAAGTGCGGACCCCGTTGGA
CCTACAGGCCTCATCCCACCAGAAGCCATCCAGGCCGCGGCCAAGGAGCT
GCATATGGCCGAGGTAAAGGCAGAAGTCGCCTCCTTCATCGCCACCACCG
TCGAATACCATCTACGTGAAGTCCTGGAAGATGCCATCAAAGTCCAAACT
CAAAGCCGCCGTCGTATCCTAACGGTTGATGACCTTACGGTTGCCATGCG
CTTGCGTGGGCAACAGCCTATATATGGGTACGGCGCAGGAGCCCAGGCCA
TGCGGGATGTGACGACTGTAGATGGAAGACAGAGTCAAGTGATTCTCTCC
GAGTTGGGGGAGAGGAGGGAGGCGCTGGTGGAGGCCATGCAAACGGAGTT
GCCCAAGGTTCCCCGAGAAGTCGGCCTCCTCCTTCACTGGCTCGCCATCG
ACGGCACACAGCCCCTCATTCCCCAAAACCCTCCCCCAATTCTCCTCTCC
TCCACCCCTGCCCCTCTCGAAGTCGAAGGCGGCGCCCTCGTCATCCCTGA
GAAGACCCACCCTCTCTCCCAAGAATTGTGGCATTACTACAAAAAAATAG
TCCAAGGCCTCATGACACCCAGCACACCCGAAAGAGAAAAACGACACTTT
TTCGCTGCCCTTGGGAGCGAGACGGGGCTACACGAACTGGTGCCGTATCT
ATCATTGCATGTCCATAACACTGTGACGCATGCTGTGGGGGCAGGGGGAA
GAGGGCCGTTGGACCCGCTCTGGGCGGCTATGAGGATATTTCGGTGCATG
GTAGTGAATCCGAACATGCACTTGGAGCTGTATTTGCACCAGATGCTACC
GTCAGTGATGACGGTGATCGCCAATAATAGGCTGGCGGCGACGAGTGTCA
GTGCTGCTGCAGCGGCGGCAGTGGGAGGAGGAGAAAGAGGAGGAGAAAAC
GGGGACCATTACGCGTTGAGGATTTTTGCGGCCCAGACACTGGCGATGCT
TGTGAGGACGTATGGGGGCGTATACAGGCCGTTGGCGAGTGTGATTTGTA
AAACGTTCGCAGAGAGGGTGGAGGAGTTTCTAGGCGTAGAGCCGGCAGGG
AAAGGAGCGCTGGCTACCCTGTACGGGACCATCACAGGGATCGTGCATTT
AGGTGCAAGGCCCGTGGAAGTGGTGTTGTTGCCGGTGGCGGGGCAGGTGT
TGGGGAGGTTGAAGGGGATTATGGAGGACAGGGGGGTAAAGCTACGGAAG
AGGGTGGAGGCGCAGAATTGTTATAGTGCTTTGGTGGCGGCAGTGGGGGA
AGCAAGGGAACGGAGGATGGGGGAACCCTTAGCGGCGGTGAGGATTGAGA
TGTTAGGCGGTATCGGAGTGGGAGTTGGGGTGGGAGGAGTAGGGGGAGGA
GGGGAAGGGGATGAGGGAAGAGATGGTGGTGGTAGGGTTGAAGGGAATTG
GAAGGGGACTATCGCGGCAGAGTCGTTGGTGCCATTTGCAGCGCAGAGCC
TGGCATACCCTGAGCATTTGTTGGCATTGTAA
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Synonyms
Publications