NO09G02700.1, NO09G02700.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G02700.1
Unique NameNO09G02700.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2033
Alignment locationchr9:802498..804530 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:802498..804530 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G02700.1 vs.
Match: EWM27547.1 (nucleotide binding protein [Nannochloropsis gaditana])

HSP 1 Score: 472.2 bits (1214), Expect = 1.600e-129
Identity = 252/421 (59.86%), Postives = 305/421 (72.45%), Query Frame = 0 
Query:    9 PSFIVTIAALSVLYSSFCIRGVFSFRLSASNYLGRHHKHHSLLVSRTIMSASFFDPQPPPPSAAAAAAEKAAATTTP--PAQTAA--SVKTILLLATTEDKASLNIVKALLSRGGWAESPSMDTTSRIWYRTTSSHNIYLWQISQGFLHADWLDRKWLAAYPEHKIQELIFLSRHAAVSGRPSLTIHPIGNPGQPFAVDEQDRAAHGGVPGRCVPPSPRMASLFRQLYKAVQGTALADVFEVTLEATHHGPWLAHPSMFVEIGSKEEDWGREDGACVWAEVLDQNLGLSAAEESNSSSTNTSTSGTSSKLVVVGVGGGHYTPKMNDLLRHRPDVLLGHVLASYCFNGPAEDWQRGMDEAIRATRAAY--------EEGEKKEDVKVCVYIDKKAFKSAPRQALVKYLEAQSISYGFKESEL 418
            PS  + I AL+++ SS   + + SF L  +++ G   +  + ++ RT M  S   P        + AA+  + TT P  PA TA   +  TILLLATTEDKAS+N+++ALL+RGGW E+  +D +SR+W+R     N+++WQI+QGFL ADWLD+ WL A+P  +IQE+IFLSRHAA SGRPSLTIHPIGNPGQPFA  E  R AHGG+PGRCVPPSPRMA LFRQL++AVQ   LA  FEVTLEATHHGPW  HP+MFVEIGSKEEDWGRED A VWA+VLD+NLGLSA E +             SKLV+VG GGGHYTPKMNDLLRHR DVLLGH+LASYCF G  EDW+RG+DEAI ATR AY        EE   KE+ +VCVYIDKKAFKSAPRQALV+YLE++ I   FKE++L
Sbjct: 1023 PSASIIIVALALVPSSLSSQRIPSFCLREASHQGILRRRCTPVL-RTRMRLSVTTP--------SMAAQPHSTTTRPAFPAATALHRASGTILLLATTEDKASVNMLQALLARGGWEETTPVDASSRVWHRPDGPQNVFMWQITQGFLRADWLDKAWLTAHPSQRIQEMIFLSRHAAASGRPSLTIHPIGNPGQPFAPQEGARGAHGGIPGRCVPPSPRMAPLFRQLHRAVQDAGLAGTFEVTLEATHHGPWHMHPTMFVEIGSKEEDWGREDAAHVWADVLDKNLGLSATEANGVRIPAVE----ESKLVIVGAGGGHYTPKMNDLLRHREDVLLGHILASYCFTGSEEDWKRGIDEAIEATRRAYSLPSENAEEEDGGKEETRVCVYIDKKAFKSAPRQALVQYLESRGIQCAFKENDL 1430
The following BLAST results are available for this feature:
BLAST of NO09G02700.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27547.11.600e-12959.86nucleotide binding protein [Nannochloropsis gadita... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G02700NO09G02700Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G02700.1NO09G02700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G02700.1.cds1NO09G02700.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G02700.1 ID=NO09G02700.1|Name=NO09G02700.1|organism=Nannochloropsis oceanica|type=mRNA|length=2033bp
GTTTTTACATATGGCGGCCCCATTCATTTTTAAATTCTGGACAAGGGCAA
GGCCGGGTTGTCGCAAAGAAATCATATAAGACTAACCCTAAACCTCTTTC
TTTTTTTTAAATCCCATCACCCTCCCAGGTATAATAGAAGATTAAATGTT
CCTCCGTTGGCTGTTTGGCCCCTCCTTTATCGTCACGATTGCCGCGCTCT
CCGTGTTGTATTCGTCTTTCTGTATTCGCGGAGTCTTCTCCTTTCGTCTT
AGCGCTTCCAATTACCTTGGACGCCACCACAAGCATCACAGTCTCCTTGT
TTCACGCACAATAATGAGTGCATCCTTTTTCGATCCACAACCACCACCAC
CATCAGCAGCAGCAGCAGCAGCAGAAAAAGCAGCAGCAACAACAACACCA
CCAGCGCAAACGGCAGCTTCAGTGAAAACCATCCTCCTACTCGCGACCAC
CGAAGATAAAGCCTCCCTCAACATCGTCAAAGCCCTCCTCTCAAGAGGCG
GCTGGGCCGAATCGCCCTCGATGGACACAACATCCCGCATCTGGTACCGT
ACAACAAGCTCCCACAACATCTACCTCTGGCAAATATCGCAAGGCTTCCT
CCACGCCGACTGGCTTGACCGGAAATGGCTAGCCGCGTACCCGGAGCATA
AAATTCAGGAGTTGATCTTCCTCAGCCGCCATGCTGCTGTTAGTGGACGG
CCTTCCTTGACCATTCACCCAATCGGTAATCCAGGCCAGCCCTTTGCAGT
TGACGAGCAGGATCGAGCCGCGCATGGTGGTGTGCCGGGGCGTTGCGTCC
CTCCCTCCCCGAGGATGGCCTCTCTTTTTCGGCAGCTTTACAAGGCTGTG
CAAGGGACGGCGTTGGCAGATGTATTTGAAGTGACACTAGAAGCAACACA
TCACGGGCCTTGGCTTGCCCATCCCTCAATGTTTGTGGAGATTGGCTCGA
AAGAAGAGGATTGGGGGAGGGAGGATGGTGCGTGTGTGTGGGCAGAGGTG
CTGGACCAAAACTTGGGGTTGAGTGCAGCGGAGGAAAGCAACAGCAGCAG
CACCAACACCAGCACCAGCGGCACCAGTAGTAAATTAGTGGTGGTTGGTG
TGGGTGGCGGGCATTACACCCCTAAAATGAACGATCTCCTGAGGCATCGT
CCGGATGTCTTACTAGGGCATGTTCTGGCGTCCTACTGTTTTAATGGCCC
CGCCGAAGACTGGCAGCGTGGGATGGATGAGGCAATCCGCGCAACCCGCG
CAGCCTATGAGGAAGGAGAAAAGAAGGAGGACGTAAAAGTATGTGTTTAC
ATTGACAAAAAGGCGTTCAAAAGCGCTCCGCGACAAGCTTTGGTAAAATA
TCTTGAGGCTCAAAGCATCTCATATGGATTTAAGGAGAGTGAACTAGTCT
AAATAGCAGCGCTTTACCTTCTGCATCGGCTGACTCCCACAGTGTCGGTA
CCATCTTAGATTCCGCGTCTTTAACATCCACAACCCGAGTCCCAGTAGAG
GCTTTCCGACATGGATGTGACGGAGGTTTTCTGACGGCCAACTAGCGGGA
GGACCGTCACCAGACGCTGTGGAGCGGAAGAGCGTCGGCTCCCTAAGCAA
CCAAGAAGTTTACAGTCTACTTCTAGCACTCATAGACACATTGATTTTCT
TGCACTGATACCGCTGGCTGGTATTGGCTTGTTTCTTTACCTTCAGACGC
TTACACAGCGAGGCATCGTCTTCTATGACTAGCCAGGTGGAGACGGTCCT
CGCCCCGCTAAGCCCGTGAAAGGGAAATAGTGTACGTAGGACCTGCCTGT
TAGCAAGTCTACTGGAGGGAGGAAGGGAGGGGAAGGCACCACCCTGCTTT
CTTCCTTAAGCATTTTGACGTGTTTTCGACAGCGGACTTGGGACGAGGGA
AGGAAGTGGGAGGGAGGGAAGGAAGGGTAGCGCTAGGAAGGGACATCGTG
GGAAGGAGGGGTGGGAGAGTTCGAATGCGAGGGTTGACGGAGAGAAGATG
TAGCGAACTATGAGAAGCAAGGGACAGGCAAAA
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protein sequence of NO09G02700.1

>NO09G02700.1-protein ID=NO09G02700.1-protein|Name=NO09G02700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=419bp
MFLRWLFGPSFIVTIAALSVLYSSFCIRGVFSFRLSASNYLGRHHKHHSL
LVSRTIMSASFFDPQPPPPSAAAAAAEKAAATTTPPAQTAASVKTILLLA
TTEDKASLNIVKALLSRGGWAESPSMDTTSRIWYRTTSSHNIYLWQISQG
FLHADWLDRKWLAAYPEHKIQELIFLSRHAAVSGRPSLTIHPIGNPGQPF
AVDEQDRAAHGGVPGRCVPPSPRMASLFRQLYKAVQGTALADVFEVTLEA
THHGPWLAHPSMFVEIGSKEEDWGREDGACVWAEVLDQNLGLSAAEESNS
SSTNTSTSGTSSKLVVVGVGGGHYTPKMNDLLRHRPDVLLGHVLASYCFN
GPAEDWQRGMDEAIRATRAAYEEGEKKEDVKVCVYIDKKAFKSAPRQALV
KYLEAQSISYGFKESELV*
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mRNA from alignment at chr9:802498..804530+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G02700.1 ID=NO09G02700.1|Name=NO09G02700.1|organism=Nannochloropsis oceanica|type=mRNA|length=2033bp|location=Sequence derived from alignment at chr9:802498..804530+ (Nannochloropsis oceanica)
GTTTTTACATATGGCGGCCCCATTCATTTTTAAATTCTGGACAAGGGCAA
GGCCGGGTTGTCGCAAAGAAATCATATAAGACTAACCCTAAACCTCTTTC
TTTTTTTTAAATCCCATCACCCTCCCAGGTATAATAGAAGATTAAATGTT
CCTCCGTTGGCTGTTTGGCCCCTCCTTTATCGTCACGATTGCCGCGCTCT
CCGTGTTGTATTCGTCTTTCTGTATTCGCGGAGTCTTCTCCTTTCGTCTT
AGCGCTTCCAATTACCTTGGACGCCACCACAAGCATCACAGTCTCCTTGT
TTCACGCACAATAATGAGTGCATCCTTTTTCGATCCACAACCACCACCAC
CATCAGCAGCAGCAGCAGCAGCAGAAAAAGCAGCAGCAACAACAACACCA
CCAGCGCAAACGGCAGCTTCAGTGAAAACCATCCTCCTACTCGCGACCAC
CGAAGATAAAGCCTCCCTCAACATCGTCAAAGCCCTCCTCTCAAGAGGCG
GCTGGGCCGAATCGCCCTCGATGGACACAACATCCCGCATCTGGTACCGT
ACAACAAGCTCCCACAACATCTACCTCTGGCAAATATCGCAAGGCTTCCT
CCACGCCGACTGGCTTGACCGGAAATGGCTAGCCGCGTACCCGGAGCATA
AAATTCAGGAGTTGATCTTCCTCAGCCGCCATGCTGCTGTTAGTGGACGG
CCTTCCTTGACCATTCACCCAATCGGTAATCCAGGCCAGCCCTTTGCAGT
TGACGAGCAGGATCGAGCCGCGCATGGTGGTGTGCCGGGGCGTTGCGTCC
CTCCCTCCCCGAGGATGGCCTCTCTTTTTCGGCAGCTTTACAAGGCTGTG
CAAGGGACGGCGTTGGCAGATGTATTTGAAGTGACACTAGAAGCAACACA
TCACGGGCCTTGGCTTGCCCATCCCTCAATGTTTGTGGAGATTGGCTCGA
AAGAAGAGGATTGGGGGAGGGAGGATGGTGCGTGTGTGTGGGCAGAGGTG
CTGGACCAAAACTTGGGGTTGAGTGCAGCGGAGGAAAGCAACAGCAGCAG
CACCAACACCAGCACCAGCGGCACCAGTAGTAAATTAGTGGTGGTTGGTG
TGGGTGGCGGGCATTACACCCCTAAAATGAACGATCTCCTGAGGCATCGT
CCGGATGTCTTACTAGGGCATGTTCTGGCGTCCTACTGTTTTAATGGCCC
CGCCGAAGACTGGCAGCGTGGGATGGATGAGGCAATCCGCGCAACCCGCG
CAGCCTATGAGGAAGGAGAAAAGAAGGAGGACGTAAAAGTATGTGTTTAC
ATTGACAAAAAGGCGTTCAAAAGCGCTCCGCGACAAGCTTTGGTAAAATA
TCTTGAGGCTCAAAGCATCTCATATGGATTTAAGGAGAGTGAACTAGTCT
AAATAGCAGCGCTTTACCTTCTGCATCGGCTGACTCCCACAGTGTCGGTA
CCATCTTAGATTCCGCGTCTTTAACATCCACAACCCGAGTCCCAGTAGAG
GCTTTCCGACATGGATGTGACGGAGGTTTTCTGACGGCCAACTAGCGGGA
GGACCGTCACCAGACGCTGTGGAGCGGAAGAGCGTCGGCTCCCTAAGCAA
CCAAGAAGTTTACAGTCTACTTCTAGCACTCATAGACACATTGATTTTCT
TGCACTGATACCGCTGGCTGGTATTGGCTTGTTTCTTTACCTTCAGACGC
TTACACAGCGAGGCATCGTCTTCTATGACTAGCCAGGTGGAGACGGTCCT
CGCCCCGCTAAGCCCGTGAAAGGGAAATAGTGTACGTAGGACCTGCCTGT
TAGCAAGTCTACTGGAGGGAGGAAGGGAGGGGAAGGCACCACCCTGCTTT
CTTCCTTAAGCATTTTGACGTGTTTTCGACAGCGGACTTGGGACGAGGGA
AGGAAGTGGGAGGGAGGGAAGGAAGGGTAGCGCTAGGAAGGGACATCGTG
GGAAGGAGGGGTGGGAGAGTTCGAATGCGAGGGTTGACGGAGAGAAGATG
TAGCGAACTATGAGAAGCAAGGGACAGGCAAAA
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Coding sequence (CDS) from alignment at chr9:802498..804530+

>NO09G02700.1 ID=NO09G02700.1|Name=NO09G02700.1|organism=Nannochloropsis oceanica|type=CDS|length=1257bp|location=Sequence derived from alignment at chr9:802498..804530+ (Nannochloropsis oceanica)
ATGTTCCTCCGTTGGCTGTTTGGCCCCTCCTTTATCGTCACGATTGCCGC
GCTCTCCGTGTTGTATTCGTCTTTCTGTATTCGCGGAGTCTTCTCCTTTC
GTCTTAGCGCTTCCAATTACCTTGGACGCCACCACAAGCATCACAGTCTC
CTTGTTTCACGCACAATAATGAGTGCATCCTTTTTCGATCCACAACCACC
ACCACCATCAGCAGCAGCAGCAGCAGCAGAAAAAGCAGCAGCAACAACAA
CACCACCAGCGCAAACGGCAGCTTCAGTGAAAACCATCCTCCTACTCGCG
ACCACCGAAGATAAAGCCTCCCTCAACATCGTCAAAGCCCTCCTCTCAAG
AGGCGGCTGGGCCGAATCGCCCTCGATGGACACAACATCCCGCATCTGGT
ACCGTACAACAAGCTCCCACAACATCTACCTCTGGCAAATATCGCAAGGC
TTCCTCCACGCCGACTGGCTTGACCGGAAATGGCTAGCCGCGTACCCGGA
GCATAAAATTCAGGAGTTGATCTTCCTCAGCCGCCATGCTGCTGTTAGTG
GACGGCCTTCCTTGACCATTCACCCAATCGGTAATCCAGGCCAGCCCTTT
GCAGTTGACGAGCAGGATCGAGCCGCGCATGGTGGTGTGCCGGGGCGTTG
CGTCCCTCCCTCCCCGAGGATGGCCTCTCTTTTTCGGCAGCTTTACAAGG
CTGTGCAAGGGACGGCGTTGGCAGATGTATTTGAAGTGACACTAGAAGCA
ACACATCACGGGCCTTGGCTTGCCCATCCCTCAATGTTTGTGGAGATTGG
CTCGAAAGAAGAGGATTGGGGGAGGGAGGATGGTGCGTGTGTGTGGGCAG
AGGTGCTGGACCAAAACTTGGGGTTGAGTGCAGCGGAGGAAAGCAACAGC
AGCAGCACCAACACCAGCACCAGCGGCACCAGTAGTAAATTAGTGGTGGT
TGGTGTGGGTGGCGGGCATTACACCCCTAAAATGAACGATCTCCTGAGGC
ATCGTCCGGATGTCTTACTAGGGCATGTTCTGGCGTCCTACTGTTTTAAT
GGCCCCGCCGAAGACTGGCAGCGTGGGATGGATGAGGCAATCCGCGCAAC
CCGCGCAGCCTATGAGGAAGGAGAAAAGAAGGAGGACGTAAAAGTATGTG
TTTACATTGACAAAAAGGCGTTCAAAAGCGCTCCGCGACAAGCTTTGGTA
AAATATCTTGAGGCTCAAAGCATCTCATATGGATTTAAGGAGAGTGAACT
AGTCTAA
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Synonyms
Publications