NO09G02660.1, NO09G02660.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G02660.1
Unique NameNO09G02660.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2125
Alignment locationchr9:794728..797271 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:794728..797271 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G02660.1 vs.
Match: EWM27589.1 (ubiquinol cytochrome c reductase subunit qcr9 [Nannochloropsis gaditana])

HSP 1 Score: 162.2 bits (409), Expect = 9.400e-37
Identity = 86/109 (78.90%), Postives = 92/109 (84.40%), Query Frame = 0 
Query:    1 MLLSMALRRTMAAQRPAMAGAGRRGLATTSSSGGGALYHTLYKNVFRSNIAYLTYVFAGAIAVEWVYSKGIDTAWELSNSGKLYHHVDWSKWHFHLDEEEEEEEDEEEE 110
            ML S A RR M  QR AMAG GRRGLAT S  G GA  HTLY+NVFRSNIAYLTYVFAGAI VEWVYSKGIDTAWE+SN GKL+H VDW+KWHFHLDEEEEEEE+EEE+
Sbjct:    1 MLFSTAFRR-MPVQRLAMAGNGRRGLATASPGGSGAFVHTLYRNVFRSNIAYLTYVFAGAIVVEWVYSKGIDTAWEISNRGKLFHQVDWTKWHFHLDEEEEEEEEEEED 108
The following BLAST results are available for this feature:
BLAST of NO09G02660.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27589.19.400e-3778.90ubiquinol cytochrome c reductase subunit qcr9 [Nan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G02660NO09G02660Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G02660.1NO09G02660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G02660.1.cds1NO09G02660.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G02660.1.cds2NO09G02660.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G02660.1.cds3NO09G02660.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G02660.1 ID=NO09G02660.1|Name=NO09G02660.1|organism=Nannochloropsis oceanica|type=mRNA|length=2125bp
CCCTCCTACCCCCCGTCCTCCTCCCCTCCCTCCACACGATACCCCAACAC
ATCGCTCTTAGTTGTTCCCGGAAACTGAGCCGGCACCGGCCAGAACCAAT
GCCCTCTTATCCTCCCCCCTTCCCTCCCACCAAACACTTCATTCACGTCC
CCTTTCCCTCCTCTCTTCCTCCCTTGCTGCTGCTGTTGCTGCAACGCTTG
AAACTGCACCCCTCCCGTTCCCATTTTCAGCCTGTCGATAGAAGTAGTGT
TGGTCGAGACAACAGTCCACTGATCAAGCATCATACAGCAAGTGAATAGA
CCGAATAAAATCGCCTCAATCACCAAAAACACTACCAGCAAATTTCCTGT
GACGTCATCACACCCTTTCGTCACAGCCGGCTCCTCCTCTCCCATGCACT
TGGCATACCTTGCCACCACCAAGATCAATGCGTAAGTACACATCAAAAAT
ATGTAAAAGATGAACAACAAAAACAACTTATGGTTGCCAATGCCCACGCA
ATTATTCACCCAGGGACAGTGGTGATCCATCTTGATAATGCATCTCTTGC
AAATACTGCAATGATGAGCTCTTGCCGGCTTGAATGCATTGCACCTCCGA
CAAAACTTACGCACACGCTGGCGAGGGCCTATCCCTGCGCCATCACTGGG
CAGCGGGTGCTTGCCCTCTTCCAAGGCAACGGCACCATCTGCCCTCCCAT
TTTCAATCAAACCTTCCTCGTCTGGCAAAGGTAAAGCCTCGCGAGGGACC
GCCCCAGGATCCGTCATCATCGCACGGACATGCGAGAGCATCGCCAAGCA
CGCCGTGGTATTGAACGCGACAAAATTCACCAACCCCGGCAAAGACAACA
AGCCCATCCACTCAAAAATCACGACCTTGTTGATAGTGTACTGCGCATAA
GCAATCAGCCACCAGGTGACCCCGGCGCAGACAACCCCGCAAGGATCTTG
GTTGCACCAGGTCCGGACGTTGTGTTTAGTTCCGCAGCCCTTTTTCTTTG
GGTCCCGCGATGACAACGGCAGGGGCCCCATTATGTAGTGTAGTGCAGGC
GCTTTCTTGCTGTGTTATTGCTGCTGGGACTGGAGCATGGCTTGCTTGTT
TGACGCCTCCTGTTTGAAGGGGGAGGAAATGAGAAGGGGGAGAAAACGCG
GTGATGAGTAGGATGGTGTTACTGCCTTTCAGTCCTCTTCGTGCCACAGG
AGCTGCCGGTGGATGTGGTTTGTGGTGCGAATGTGGATTAAATGCTTCGA
ATTGGGGCATGGGCGAGGTAGGCGACGATGACCAAGGGCCCTAAGCATCA
TCATTTTGCTTCTTGGGCTCCTCTCCAATAAGAAGCTAGGCAATGCCTAT
TGTGTCCTTGCCACTCGCGTGCTGTGCATCCAAGCCCAATCAAAAACTCT
CCACTCGCCTCTGATAGTGGTGGTTGTTGTACGTCGGCTGCGGCAGAGGT
CCTTCTCATGACTTCCAAGCAGCTGATCACGCCTGCTTCCTCTCGCCTCC
ATGCGTATCGCAAATGCCGCATCGCTTCCCACTGACTAACAAACCACACA
ACAACACACTCTATAGGCATCGATGCTGCTCTCCATGGCGTTGCGGCGCA
CAATGGCTGCCCAGCGGCCAGCAATGGCGGGGGCAGGCCGCCGTGGCCTG
GCCACGACTAGCAGCAGCGGGGGCGGGGCCCTTTACCACACGCTGTACAA
GAACGTCTTTCGCAGCAACATTGCCTACTTGACTTATGTCTTTGCGGGGG
CCATTGCGGTAGAGTGGGTCTACTCCAAGGGCATCGACACGGCATGGGAG
CTGAGCAACAGTGGGAAACTTTACCACCATGTAGACTGGAGCAAGTGGCA
CTTCCACCTAGACGAGGAAGAAGAGGAGGAAGAGGACGAAGAGGAGGAGT
AAAGTAAAGCTGAGTAGCATGTGGAGTAGCCGCGTATGCATTGAGCGTGT
ATGTGTGATGTAGGGAAGGAGGGAGGGGAAGGAGGGGGGGACGCGGGATT
CGCCGTGACGTCGCCTTCTCCATTCTGTGCGATTGGTGGCTATCTGGGGG
AAGAGAAAAAGCTGCAACAGAATGGGGCGGTGAGAACGACCGATAAGGAA
CGAAATGATGTTTTGGTTGACAAGA
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protein sequence of NO09G02660.1

>NO09G02660.1-protein ID=NO09G02660.1-protein|Name=NO09G02660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=110bp
MLLSMALRRTMAAQRPAMAGAGRRGLATTSSSGGGALYHTLYKNVFRSNI
AYLTYVFAGAIAVEWVYSKGIDTAWELSNSGKLYHHVDWSKWHFHLDEEE
EEEEDEEEE*
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mRNA from alignment at chr9:794728..797271+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G02660.1 ID=NO09G02660.1|Name=NO09G02660.1|organism=Nannochloropsis oceanica|type=mRNA|length=2544bp|location=Sequence derived from alignment at chr9:794728..797271+ (Nannochloropsis oceanica)
CCCTCCTACCCCCCGTCCTCCTCCCCTCCCTCCACACGATACCCCAACAC
ATCGCTCTTAGTTGTTCCCGGAAACTGAGCCGGCACCGGCCAGAACCAAT
GCCCTCTTATCCTCCCCCCTTCCCTCCCACCAAACACTTCATTCACGTCC
CCTTTCCCTCCTCTCTTCCTCCCTTGCTGCTGCTGTTGCTGCAACGCTTG
AAACTGCACCCCTCCCGTTCCCATTTTCAGCCTGTCGATAGAAGTAGTGT
TGGTCGAGACAACAGTCCACTGATCAAGCATCATACAGCAAGTGAATAGA
CCGAATAAAATCGCCTCAATCACCAAAAACACTACCAGCAAATTTCCTGT
GACGTCATCACACCCTTTCGTCACAGCCGGCTCCTCCTCTCCCATGCACT
TGGCATACCTTGCCACCACCAAGATCAATGCGTAAGTACACATCAAAAAT
ATGTAAAAGATGAACAACAAAAACAACTTATGGTTGCCAATGCCCACGCA
ATTATTCACCCAGGGACAGTGGTGATCCATCTTGATAATGCATCTCTTGC
AAATACTGCAATGATGAGCTCTTGCCGGCTTGAATGCATTGCACCTCCGA
CAAAACTTACGCACACGCTGGCGAGGGCCTATCCCTGCGCCATCACTGGG
CAGCGGGTGCTTGCCCTCTTCCAAGGCAACGGCACCATCTGCCCTCCCAT
TTTCAATCAAACCTTCCTCGTCTGGCAAAGGTAAAGCCTCGCGAGGGACC
GCCCCAGGATCCGTCATCATCGCACGGACATGCGAGAGCATCGCCAAGCA
CGCCGTGGTATTGAACGCGACAAAATTCACCAACCCCGGCAAAGACAACA
AGCCCATCCACTCAAAAATCACGACCTTGTTGATAGTGTACTGCGCATAA
GCAATCAGCCACCAGGTGACCCCGGCGCAGACAACCCCGCAAGGATCTTG
GTTGCACCAGGTCCGGACGTTGTGTTTAGTTCCGCAGCCCTTTTTCTTTG
GGTCCCGCGATGACAACGGCAGGGGCCCCATTATGTAGTGTAGTGCAGGC
GCTTTCTTGCTGTGTTATTGCTGCTGGGACTGGAGCATGGCTTGCTTGTT
TGACGCCTCCTGTTTGAAGGGGGAGGAAATGAGAAGGGGGAGAAAACGCG
GTGATGAGTAGGATGGTGTTACTGCCTTTCAGTCCTCTTCGTGCCACAGG
AGCTGCCGGTGGATGTGGTTTGTGGTGCGAATGTGGATTAAATGCTTCGA
ATTGGGGCATGGGCGAGGTAGGCGACGATGACCAAGGGCCCTAAGCATCA
TCATTTTGCTTCTTGGGCTCCTCTCCAATAAGAAGCTAGGCAATGCCTAT
TGTGTCCTTGCCACTCGCGTGCTGTGCATCCAAGCCCAATCAAAAACTCT
CCACTCGCCTCTGATAGTGGTGGTTGTTGTACGTCGGCTGCGGCAGAGGT
CCTTCTCATGACTTCCAAGCAGCTGATCACGCCTGCTTCCTCTCGCCTCC
ATGCGTATCGCAAATGCCGCATCGCTTCCCACTGACTAACAAACCACACA
ACAACACACTCTATAGGCATCGATGCTGCTCTCCATGGCGTTGCGGCGCA
CAATGGCTGCCCAGCGGCCAGCAATGGCGGGGGCAGGTATGTACACTCGA
AGGAAAGAGGGAGGAAATGAGAAAGTCGATCTGGGAGCTGTGCACTCGTC
GTCGTGTCTTGTCCTGCATCAACCAACACGTCAAGCGCCCACCCAAACTC
ACACCCCATATCCTCCTCCCTCTTTCGTTAGGCCGCCGTGGCCTGGCCAC
GACTAGCAGCAGCGGGGGCGGGGCCCTTTACCACACGCTGTACAAGAACG
TCTTTCGCAGCAACATTGCCTACTTGACTTATGTCTTTGCGGGGGCCATT
GCGGTAGAGTGGGTCTACTCCAAGGGCATCGACACGGCATGGGAGCTGAG
CAACAGTGGGGTACGTCTCGTGTTTGTGTTTTGCTGGTGGGGAGAATGGA
GCGAGATCGGGATGTGTGAAGGAATGGAGGGGCCTTCGCTGTAGCTTGGT
AGAGAGGGTGAAGGAAAGAGAGAAAGCAAAGGTTGATTTGGGATGCTGCG
ATCAGTAATGGACTCTCATTTGATGATATAATTGTTCTGGTGAAGACAAT
CGAGAAAGCGGTGTTCTTCAAAGAAAGAACAAGCAATGCGTATGACCTCA
CACTGGCACACTTTCACAACACCACCAAACACAGAAACTTTACCACCATG
TAGACTGGAGCAAGTGGCACTTCCACCTAGACGAGGAAGAAGAGGAGGAA
GAGGACGAAGAGGAGGAGTAAAGTAAAGCTGAGTAGCATGTGGAGTAGCC
GCGTATGCATTGAGCGTGTATGTGTGATGTAGGGAAGGAGGGAGGGGAAG
GAGGGGGGGACGCGGGATTCGCCGTGACGTCGCCTTCTCCATTCTGTGCG
ATTGGTGGCTATCTGGGGGAAGAGAAAAAGCTGCAACAGAATGGGGCGGT
GAGAACGACCGATAAGGAACGAAATGATGTTTTGGTTGACAAGA
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Coding sequence (CDS) from alignment at chr9:794728..797271+

>NO09G02660.1 ID=NO09G02660.1|Name=NO09G02660.1|organism=Nannochloropsis oceanica|type=CDS|length=330bp|location=Sequence derived from alignment at chr9:794728..797271+ (Nannochloropsis oceanica)
ATGCTGCTCTCCATGGCGTTGCGGCGCACAATGGCTGCCCAGCGGCCAGC
AATGGCGGGGGCAGGCCGCCGTGGCCTGGCCACGACTAGCAGCAGCGGGG
GCGGGGCCCTTTACCACACGCTGTACAAGAACGTCTTTCGCAGCAACATT
GCCTACTTGACTTATGTCTTTGCGGGGGCCATTGCGGTAGAGTGGGTCTA
CTCCAAGGGCATCGACACGGCATGGGAGCTGAGCAACAGTGGGAAACTTT
ACCACCATGTAGACTGGAGCAAGTGGCACTTCCACCTAGACGAGGAAGAA
GAGGAGGAAGAGGACGAAGAGGAGGAGTAA
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Synonyms
Publications