NO09G02610.1, NO09G02610.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G02610.1
Unique NameNO09G02610.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1584
Alignment locationchr9:780279..781862 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:780279..781862 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G02610.1 vs.
Match: EWM27565.1 (atp-dependent zinc metalloprotease ftsh mitochondrial-like protein [Nannochloropsis gaditana])

HSP 1 Score: 945.3 bits (2442), Expect = 8.300e-272
Identity = 488/530 (92.08%), Postives = 514/530 (96.98%), Query Frame = 0 
Query:    1 MVEPGFKQQLWKTFRFALFVFLVISGLSALIDDKGISSKLMMSTNLHMAESSDKRFDDVMGVDEAKQELEEIVLYLRDPSRFTRLGGKLPRGLLLLGPPGTGKTLLARAIAGEAGVPFFYASGSEFEEMYVGVGARRVRDLFEAAKKRSPCIIFIDEIDAIGGARHLKDQQAMKMTLNQLLVELDGFEQNKGVIIIGATNFPQSLDEALLRPGRFDKHVQVPLPDILGRKQILELYVKKIPTDEDVDLDILARGTPGMSGAELSNLVNEAALKASIDGLKAINMATFEYAKDKIMMGSERRSAVISKETATVTAYHEGGHALVALKTGGADPVYKATIMPRGQALGMVTQLPDGDQTSMSKKQILARLDVCMGGRVAEELIFGAENVTSGASSDIQQATRLARAMVTQWGMSDTVGLVFHAKDGGEQSPETRAAIDREVKSILDASHVRAKEMLLKYKSELDVLAKALLEHETLTGPEIIDLLAGKKLSKPKVAPRASMAAEAP---KQGGAAAGAAAKPGILKGGRLGA 528
            MVEPGFKQQLW+TFRF LFVFLVISGLSA+IDDKGISSKLMMSTNLHMAESSDKRF DVMGVDEAKQELEEIVLYL+DPSRFTRLGGKLP+GLLLLGPPGTGKTLLARAIAGEAGVPFFYASGSEFEEMYVGVGARRVRDLFEAAKKR+PCIIF+DEIDAIGGARHLKDQQAMKMTLNQLLVELDGFEQNKGVIIIGATNFPQSLDEALLRPGRFDKHVQVPLPDILGRKQILELYVKKIPTD DV++D+LARGTPGMSGAELSNL+NEAALKASIDGLKAINMATFE+AKDKIMMGSERRSAVISKETATVTAYHEGGHALVALKTGGADPVYKATIMPRGQALGMVTQLPDGDQTSMSKKQI+ARLDVCMGGRVAEELIFGAENVTSGASSDIQQATRLARAMVTQWGMS+ VGLVFHAKDGGEQSPETRAAIDREVK+ILDASH+RAKE+L+K+K +LD+LAKALL+HETLTGPEI+DLLAGKKLSKPKVAPRA+MA  +P      G+ AG A KPGILKGGR+GA
Sbjct:  249 MVEPGFKQQLWRTFRFTLFVFLVISGLSAMIDDKGISSKLMMSTNLHMAESSDKRFSDVMGVDEAKQELEEIVLYLKDPSRFTRLGGKLPKGLLLLGPPGTGKTLLARAIAGEAGVPFFYASGSEFEEMYVGVGARRVRDLFEAAKKRAPCIIFVDEIDAIGGARHLKDQQAMKMTLNQLLVELDGFEQNKGVIIIGATNFPQSLDEALLRPGRFDKHVQVPLPDILGRKQILELYVKKIPTDSDVNMDVLARGTPGMSGAELSNLINEAALKASIDGLKAINMATFEWAKDKIMMGSERRSAVISKETATVTAYHEGGHALVALKTGGADPVYKATIMPRGQALGMVTQLPDGDQTSMSKKQIMARLDVCMGGRVAEELIFGAENVTSGASSDIQQATRLARAMVTQWGMSEAVGLVFHAKDGGEQSPETRAAIDREVKAILDASHLRAKELLVKHKGDLDLLAKALLDHETLTGPEIVDLLAGKKLSKPKVAPRATMAPPSPAATPSPGSPAG-ATKPGILKGGRIGA 777
The following BLAST results are available for this feature:
BLAST of NO09G02610.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27565.18.300e-27292.08atp-dependent zinc metalloprotease ftsh mitochondr... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G02610NO09G02610Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G02610.1NO09G02610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G02610.1.cds1NO09G02610.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G02610.1 ID=NO09G02610.1|Name=NO09G02610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1584bp
ATGGTGGAGCCTGGATTTAAGCAGCAGTTGTGGAAGACGTTCAGGTTTGC
GTTATTTGTCTTCCTGGTCATTTCGGGGTTGAGTGCTTTGATCGACGACA
AGGGTATAAGTAGCAAGTTGATGATGTCGACAAATTTGCATATGGCGGAG
AGTAGTGACAAACGATTTGATGACGTGATGGGAGTGGATGAGGCGAAGCA
GGAGCTGGAGGAGATTGTGTTGTATCTGAGGGACCCTTCGAGGTTCACGC
GGTTGGGCGGCAAGCTTCCGAGAGGCCTTCTGCTTCTGGGGCCGCCGGGG
ACGGGCAAGACGTTGCTAGCAAGGGCGATTGCAGGGGAGGCGGGGGTTCC
TTTTTTCTATGCGTCGGGATCGGAATTTGAGGAGATGTACGTGGGCGTTG
GAGCAAGGAGGGTAAGGGATTTGTTTGAAGCGGCCAAGAAGCGGAGTCCG
TGCATCATCTTCATCGATGAGATCGACGCGATTGGAGGGGCGAGACATCT
TAAGGACCAGCAGGCGATGAAGATGACCTTGAATCAGCTCTTGGTGGAAC
TGGACGGGTTTGAACAGAACAAAGGGGTGATAATCATCGGTGCGACTAAT
TTCCCTCAGTCCCTGGATGAGGCGCTGTTGAGGCCGGGGAGGTTCGATAA
GCATGTGCAGGTCCCGCTGCCCGATATCTTGGGTAGGAAGCAAATCCTGG
AGCTGTATGTGAAGAAAATTCCGACGGATGAGGATGTGGATTTGGATATA
TTGGCGAGGGGGACCCCGGGGATGAGTGGGGCAGAGTTGTCGAATTTGGT
TAATGAAGCCGCCTTGAAAGCGTCGATAGACGGGTTGAAGGCGATCAATA
TGGCCACGTTTGAATACGCCAAGGACAAGATCATGATGGGGTCCGAGCGG
AGGAGTGCGGTGATCAGCAAGGAGACTGCTACTGTGACCGCCTACCACGA
GGGGGGGCATGCCCTGGTGGCATTGAAAACGGGTGGGGCGGACCCTGTGT
ACAAGGCGACCATCATGCCGAGGGGACAGGCGCTTGGAATGGTGACTCAG
TTGCCGGATGGGGATCAGACGAGCATGAGCAAGAAACAGATTCTTGCGAG
GCTTGACGTGTGTATGGGGGGAAGGGTGGCGGAGGAGTTGATTTTTGGGG
CGGAGAATGTTACAAGTGGCGCGAGTTCGGATATCCAGCAGGCGACACGC
TTGGCACGCGCGATGGTGACCCAGTGGGGCATGAGCGACACTGTTGGGTT
GGTTTTCCATGCCAAGGATGGAGGGGAGCAAAGTCCGGAGACAAGGGCAG
CGATTGATAGGGAGGTGAAGTCGATTTTGGATGCGTCGCACGTGAGAGCG
AAGGAGATGTTGTTGAAGTATAAATCGGAATTAGACGTCCTTGCCAAGGC
GTTACTTGAACACGAGACCTTGACGGGCCCGGAGATCATTGATCTGCTGG
CAGGGAAGAAGTTGAGTAAACCCAAGGTGGCTCCCAGGGCGTCTATGGCC
GCCGAGGCACCGAAGCAGGGAGGGGCAGCCGCAGGGGCAGCGGCGAAGCC
GGGGATTCTGAAGGGAGGGAGGTTGGGTGCTTAA
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protein sequence of NO09G02610.1

>NO09G02610.1-protein ID=NO09G02610.1-protein|Name=NO09G02610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=528bp
MVEPGFKQQLWKTFRFALFVFLVISGLSALIDDKGISSKLMMSTNLHMAE
SSDKRFDDVMGVDEAKQELEEIVLYLRDPSRFTRLGGKLPRGLLLLGPPG
TGKTLLARAIAGEAGVPFFYASGSEFEEMYVGVGARRVRDLFEAAKKRSP
CIIFIDEIDAIGGARHLKDQQAMKMTLNQLLVELDGFEQNKGVIIIGATN
FPQSLDEALLRPGRFDKHVQVPLPDILGRKQILELYVKKIPTDEDVDLDI
LARGTPGMSGAELSNLVNEAALKASIDGLKAINMATFEYAKDKIMMGSER
RSAVISKETATVTAYHEGGHALVALKTGGADPVYKATIMPRGQALGMVTQ
LPDGDQTSMSKKQILARLDVCMGGRVAEELIFGAENVTSGASSDIQQATR
LARAMVTQWGMSDTVGLVFHAKDGGEQSPETRAAIDREVKSILDASHVRA
KEMLLKYKSELDVLAKALLEHETLTGPEIIDLLAGKKLSKPKVAPRASMA
AEAPKQGGAAAGAAAKPGILKGGRLGA*
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mRNA from alignment at chr9:780279..781862+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G02610.1 ID=NO09G02610.1|Name=NO09G02610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1584bp|location=Sequence derived from alignment at chr9:780279..781862+ (Nannochloropsis oceanica)
ATGGTGGAGCCTGGATTTAAGCAGCAGTTGTGGAAGACGTTCAGGTTTGC
GTTATTTGTCTTCCTGGTCATTTCGGGGTTGAGTGCTTTGATCGACGACA
AGGGTATAAGTAGCAAGTTGATGATGTCGACAAATTTGCATATGGCGGAG
AGTAGTGACAAACGATTTGATGACGTGATGGGAGTGGATGAGGCGAAGCA
GGAGCTGGAGGAGATTGTGTTGTATCTGAGGGACCCTTCGAGGTTCACGC
GGTTGGGCGGCAAGCTTCCGAGAGGCCTTCTGCTTCTGGGGCCGCCGGGG
ACGGGCAAGACGTTGCTAGCAAGGGCGATTGCAGGGGAGGCGGGGGTTCC
TTTTTTCTATGCGTCGGGATCGGAATTTGAGGAGATGTACGTGGGCGTTG
GAGCAAGGAGGGTAAGGGATTTGTTTGAAGCGGCCAAGAAGCGGAGTCCG
TGCATCATCTTCATCGATGAGATCGACGCGATTGGAGGGGCGAGACATCT
TAAGGACCAGCAGGCGATGAAGATGACCTTGAATCAGCTCTTGGTGGAAC
TGGACGGGTTTGAACAGAACAAAGGGGTGATAATCATCGGTGCGACTAAT
TTCCCTCAGTCCCTGGATGAGGCGCTGTTGAGGCCGGGGAGGTTCGATAA
GCATGTGCAGGTCCCGCTGCCCGATATCTTGGGTAGGAAGCAAATCCTGG
AGCTGTATGTGAAGAAAATTCCGACGGATGAGGATGTGGATTTGGATATA
TTGGCGAGGGGGACCCCGGGGATGAGTGGGGCAGAGTTGTCGAATTTGGT
TAATGAAGCCGCCTTGAAAGCGTCGATAGACGGGTTGAAGGCGATCAATA
TGGCCACGTTTGAATACGCCAAGGACAAGATCATGATGGGGTCCGAGCGG
AGGAGTGCGGTGATCAGCAAGGAGACTGCTACTGTGACCGCCTACCACGA
GGGGGGGCATGCCCTGGTGGCATTGAAAACGGGTGGGGCGGACCCTGTGT
ACAAGGCGACCATCATGCCGAGGGGACAGGCGCTTGGAATGGTGACTCAG
TTGCCGGATGGGGATCAGACGAGCATGAGCAAGAAACAGATTCTTGCGAG
GCTTGACGTGTGTATGGGGGGAAGGGTGGCGGAGGAGTTGATTTTTGGGG
CGGAGAATGTTACAAGTGGCGCGAGTTCGGATATCCAGCAGGCGACACGC
TTGGCACGCGCGATGGTGACCCAGTGGGGCATGAGCGACACTGTTGGGTT
GGTTTTCCATGCCAAGGATGGAGGGGAGCAAAGTCCGGAGACAAGGGCAG
CGATTGATAGGGAGGTGAAGTCGATTTTGGATGCGTCGCACGTGAGAGCG
AAGGAGATGTTGTTGAAGTATAAATCGGAATTAGACGTCCTTGCCAAGGC
GTTACTTGAACACGAGACCTTGACGGGCCCGGAGATCATTGATCTGCTGG
CAGGGAAGAAGTTGAGTAAACCCAAGGTGGCTCCCAGGGCGTCTATGGCC
GCCGAGGCACCGAAGCAGGGAGGGGCAGCCGCAGGGGCAGCGGCGAAGCC
GGGGATTCTGAAGGGAGGGAGGTTGGGTGCTTAA
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Coding sequence (CDS) from alignment at chr9:780279..781862+

>NO09G02610.1 ID=NO09G02610.1|Name=NO09G02610.1|organism=Nannochloropsis oceanica|type=CDS|length=1584bp|location=Sequence derived from alignment at chr9:780279..781862+ (Nannochloropsis oceanica)
ATGGTGGAGCCTGGATTTAAGCAGCAGTTGTGGAAGACGTTCAGGTTTGC
GTTATTTGTCTTCCTGGTCATTTCGGGGTTGAGTGCTTTGATCGACGACA
AGGGTATAAGTAGCAAGTTGATGATGTCGACAAATTTGCATATGGCGGAG
AGTAGTGACAAACGATTTGATGACGTGATGGGAGTGGATGAGGCGAAGCA
GGAGCTGGAGGAGATTGTGTTGTATCTGAGGGACCCTTCGAGGTTCACGC
GGTTGGGCGGCAAGCTTCCGAGAGGCCTTCTGCTTCTGGGGCCGCCGGGG
ACGGGCAAGACGTTGCTAGCAAGGGCGATTGCAGGGGAGGCGGGGGTTCC
TTTTTTCTATGCGTCGGGATCGGAATTTGAGGAGATGTACGTGGGCGTTG
GAGCAAGGAGGGTAAGGGATTTGTTTGAAGCGGCCAAGAAGCGGAGTCCG
TGCATCATCTTCATCGATGAGATCGACGCGATTGGAGGGGCGAGACATCT
TAAGGACCAGCAGGCGATGAAGATGACCTTGAATCAGCTCTTGGTGGAAC
TGGACGGGTTTGAACAGAACAAAGGGGTGATAATCATCGGTGCGACTAAT
TTCCCTCAGTCCCTGGATGAGGCGCTGTTGAGGCCGGGGAGGTTCGATAA
GCATGTGCAGGTCCCGCTGCCCGATATCTTGGGTAGGAAGCAAATCCTGG
AGCTGTATGTGAAGAAAATTCCGACGGATGAGGATGTGGATTTGGATATA
TTGGCGAGGGGGACCCCGGGGATGAGTGGGGCAGAGTTGTCGAATTTGGT
TAATGAAGCCGCCTTGAAAGCGTCGATAGACGGGTTGAAGGCGATCAATA
TGGCCACGTTTGAATACGCCAAGGACAAGATCATGATGGGGTCCGAGCGG
AGGAGTGCGGTGATCAGCAAGGAGACTGCTACTGTGACCGCCTACCACGA
GGGGGGGCATGCCCTGGTGGCATTGAAAACGGGTGGGGCGGACCCTGTGT
ACAAGGCGACCATCATGCCGAGGGGACAGGCGCTTGGAATGGTGACTCAG
TTGCCGGATGGGGATCAGACGAGCATGAGCAAGAAACAGATTCTTGCGAG
GCTTGACGTGTGTATGGGGGGAAGGGTGGCGGAGGAGTTGATTTTTGGGG
CGGAGAATGTTACAAGTGGCGCGAGTTCGGATATCCAGCAGGCGACACGC
TTGGCACGCGCGATGGTGACCCAGTGGGGCATGAGCGACACTGTTGGGTT
GGTTTTCCATGCCAAGGATGGAGGGGAGCAAAGTCCGGAGACAAGGGCAG
CGATTGATAGGGAGGTGAAGTCGATTTTGGATGCGTCGCACGTGAGAGCG
AAGGAGATGTTGTTGAAGTATAAATCGGAATTAGACGTCCTTGCCAAGGC
GTTACTTGAACACGAGACCTTGACGGGCCCGGAGATCATTGATCTGCTGG
CAGGGAAGAAGTTGAGTAAACCCAAGGTGGCTCCCAGGGCGTCTATGGCC
GCCGAGGCACCGAAGCAGGGAGGGGCAGCCGCAGGGGCAGCGGCGAAGCC
GGGGATTCTGAAGGGAGGGAGGTTGGGTGCTTAA
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Synonyms
Publications