NO09G02530.1, NO09G02530.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO09G02530.1
Unique Name	NO09G02530.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1060
Alignment location	chr9:751193..752252 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr9	genome	chr9:751193..752252 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO09G02530.1 vs.

BLAST of NO09G02530.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO09G02530	NO09G02530	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO09G02530.1	NO09G02530.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO09G02530.1.cds1	NO09G02530.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr9:751193..752252-
coding sequence from alignment at chr9:751193..752252-

mRNA sequence

>NO09G02530.1 ID=NO09G02530.1|Name=NO09G02530.1|organism=Nannochloropsis oceanica|type=mRNA|length=1060bp
TCTTCGCCGGCCTACGACTACATACGACACACGCACTATTATTTGTCGTT
GAAGGATAGAAAGTGGTGCGTGATAATTTGAAGTTACTATTACTATAGCT
AGCTCTAGATACGCGCGTGTCGTGCAGCTCAGCCCGAGCATTACAATGAG
AACAGCGACAATGATGGACGACCACATAAATCAGGACATACTAAAACTCT
CGACTCCCCCCATCACAACATCAGCACTCCTAAAGAATGGCAACACAAGA
TGTCGCTGCTGCCTCCGTCGCTATAGCCGTCGCCTTACCATGCCAATATG
ACGAATCTGCCGTCCCTGACGACCAAAATGAACAAGCTGACGGAATGGAG
CAAGCTGACGGGATGGAGGAGGAAGATGGGATGGAGGAGGAGGACTCTGA
TGTGGTGGTGATGGAACAGGAGGACAACGCTAGTGTCAACAGCAGCATCA
ACAGTAGCATCACCGCCAGCTCCAGTAGCAGCGCGAAATCCCGTCGACGG
TTGTCTCTTTCTACCATCAATGGGAAGCGGAAGCGGAAAGCTCTTGGCGT
GGAGAGGATCGACCTGCCGATGAAGGACCTCTCTACGTTCGTCAACACCC
GCGCCATGCCAGTTGAGCTTGCTGAAGAGGGCGGCTGGATGCGACAGAAA
CCACCCACTGCGAACAAGCATGTCAGCCACGCCTGGATGTTTTGCGCATG
CTTTCAGAAGGACACCCAGCGACGGTGGTACTGTCAGACGACGGAGACCT
GCCGCGACAACAACATATTTATCTCAACGACCTCCACTTCCACGGCCAAC
GTCACGAGCCACTTGCGTGACCATCACGGCAGCATCAGTAATAAATATGT
TAAATATGTTGTTGACGCGGCAGGTCTCCGTCGTCTGACAGTACCACCGT
CGCTGGGTGTCCTTCTGAAAGCATGCGCAAAACATCCAGGCGAGGTTGAC
ATGCAGTGGGTGGTTTCTGTCGCATCCAGCCGCCCTCTTCAGCAAGCTCA
ACTGGCATGGCGCGGGTGTTGACGAACGTAGAGAGGTCCTTCATCGGCAG
GTCGATCCTG

protein sequence of NO09G02530.1

>NO09G02530.1-protein ID=NO09G02530.1-protein|Name=NO09G02530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=262bp
MATQDVAAASVAIAVALPCQYDESAVPDDQNEQADGMEQADGMEEEDGME
EEDSDVVVMEQEDNASVNSSINSSITASSSSSAKSRRRLSLSTINGKRKR
KALGVERIDLPMKDLSTFVNTRAMPVELAEEGGWMRQKPPTANKHVSHAW
MFCACFQKDTQRRWYCQTTETCRDNNIFISTTSTSTANVTSHLRDHHGSI
SNKYVKYVVDAAGLRRLTVPPSLGVLLKACAKHPGEVDMQWVVSVASSRP
LQQAQLAWRGC*

mRNA from alignment at chr9:751193..752252-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO09G02530.1 ID=NO09G02530.1|Name=NO09G02530.1|organism=Nannochloropsis oceanica|type=mRNA|length=1060bp|location=Sequence derived from alignment at chr9:751193..752252- (Nannochloropsis oceanica)
TCTTCGCCGGCCTACGACTACATACGACACACGCACTATTATTTGTCGTT
GAAGGATAGAAAGTGGTGCGTGATAATTTGAAGTTACTATTACTATAGCT
AGCTCTAGATACGCGCGTGTCGTGCAGCTCAGCCCGAGCATTACAATGAG
AACAGCGACAATGATGGACGACCACATAAATCAGGACATACTAAAACTCT
CGACTCCCCCCATCACAACATCAGCACTCCTAAAGAATGGCAACACAAGA
TGTCGCTGCTGCCTCCGTCGCTATAGCCGTCGCCTTACCATGCCAATATG
ACGAATCTGCCGTCCCTGACGACCAAAATGAACAAGCTGACGGAATGGAG
CAAGCTGACGGGATGGAGGAGGAAGATGGGATGGAGGAGGAGGACTCTGA
TGTGGTGGTGATGGAACAGGAGGACAACGCTAGTGTCAACAGCAGCATCA
ACAGTAGCATCACCGCCAGCTCCAGTAGCAGCGCGAAATCCCGTCGACGG
TTGTCTCTTTCTACCATCAATGGGAAGCGGAAGCGGAAAGCTCTTGGCGT
GGAGAGGATCGACCTGCCGATGAAGGACCTCTCTACGTTCGTCAACACCC
GCGCCATGCCAGTTGAGCTTGCTGAAGAGGGCGGCTGGATGCGACAGAAA
CCACCCACTGCGAACAAGCATGTCAGCCACGCCTGGATGTTTTGCGCATG
CTTTCAGAAGGACACCCAGCGACGGTGGTACTGTCAGACGACGGAGACCT
GCCGCGACAACAACATATTTATCTCAACGACCTCCACTTCCACGGCCAAC
GTCACGAGCCACTTGCGTGACCATCACGGCAGCATCAGTAATAAATATGT
TAAATATGTTGTTGACGCGGCAGGTCTCCGTCGTCTGACAGTACCACCGT
CGCTGGGTGTCCTTCTGAAAGCATGCGCAAAACATCCAGGCGAGGTTGAC
ATGCAGTGGGTGGTTTCTGTCGCATCCAGCCGCCCTCTTCAGCAAGCTCA
ACTGGCATGGCGCGGGTGTTGACGAACGTAGAGAGGTCCTTCATCGGCAG
GTCGATCCTG

Coding sequence (CDS) from alignment at chr9:751193..752252-

>NO09G02530.1 ID=NO09G02530.1|Name=NO09G02530.1|organism=Nannochloropsis oceanica|type=CDS|length=786bp|location=Sequence derived from alignment at chr9:751193..752252- (Nannochloropsis oceanica)
ATGGCAACACAAGATGTCGCTGCTGCCTCCGTCGCTATAGCCGTCGCCTT
ACCATGCCAATATGACGAATCTGCCGTCCCTGACGACCAAAATGAACAAG
CTGACGGAATGGAGCAAGCTGACGGGATGGAGGAGGAAGATGGGATGGAG
GAGGAGGACTCTGATGTGGTGGTGATGGAACAGGAGGACAACGCTAGTGT
CAACAGCAGCATCAACAGTAGCATCACCGCCAGCTCCAGTAGCAGCGCGA
AATCCCGTCGACGGTTGTCTCTTTCTACCATCAATGGGAAGCGGAAGCGG
AAAGCTCTTGGCGTGGAGAGGATCGACCTGCCGATGAAGGACCTCTCTAC
GTTCGTCAACACCCGCGCCATGCCAGTTGAGCTTGCTGAAGAGGGCGGCT
GGATGCGACAGAAACCACCCACTGCGAACAAGCATGTCAGCCACGCCTGG
ATGTTTTGCGCATGCTTTCAGAAGGACACCCAGCGACGGTGGTACTGTCA
GACGACGGAGACCTGCCGCGACAACAACATATTTATCTCAACGACCTCCA
CTTCCACGGCCAACGTCACGAGCCACTTGCGTGACCATCACGGCAGCATC
AGTAATAAATATGTTAAATATGTTGTTGACGCGGCAGGTCTCCGTCGTCT
GACAGTACCACCGTCGCTGGGTGTCCTTCTGAAAGCATGCGCAAAACATC
CAGGCGAGGTTGACATGCAGTGGGTGGTTTCTGTCGCATCCAGCCGCCCT
CTTCAGCAAGCTCAACTGGCATGGCGCGGGTGTTGA

Synonyms

Publications