NO09G02270.1, NO09G02270.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G02270.1
Unique NameNO09G02270.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length735
Alignment locationchr9:683209..683943 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:683209..683943 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G02270.1 vs.
Match: EWM27594.1 (5 -3 exoribonuclease 1 [Nannochloropsis gaditana])

HSP 1 Score: 71.6 bits (174), Expect = 3.700e-9
Identity = 93/248 (37.50%), Postives = 122/248 (49.19%), Query Frame = 0 
Query:    1 MARILGMLSLKGKKEDKEEKEEKEDEADNTMVAKNTAGEAEGGVGVDATGSLKGLLKLNGSNNNNSTPAPPPSQQQQQQQQQQQQQQQQQQQQQQQQHQGFLPYPRGPAGPGGPGPFYHHPPQPPPPGGYYFPPSMPGAFMPPMMMPYHGGSHPPPPQATVVPRRPRERRVVNIVGTEG-----PGSAGAEVKAGGANNNTPTTTTKPAYIMPSQVLRSGSASKKVLSTSSGAGTGEEK--IVEGASS 242
            MAR++G+LSL+ K+ D  ++E        T+V   T+  +E G    AT +LK +L L G    +S+  PP +        QQ                   PYP GP G  GP  FY      PPP GYYF P MPG  M   MMP+H  +H   PQ+ V+PRRPRERR  N  GT G      G  G     GG   N     +K ++IMPSQVLR+G++SKK +S  + A    EK  +  G +S
Sbjct: 1429 MARVMGLLSLQ-KEGDNLQQE--------TLV---TSKSSEVG---GATNNLKSILNLTGGMKGSSSSNPPTASNSVAVHHQQPPPAY--------------PYPAGP-GFLGPNGFY----PTPPPPGYYFHPHMPGTSM-SSMMPHHLVAH---PQSPVIPRRPRERRSSNAEGTGGGESLQAGGYGETSSDGGGATNGRGVISKGSFIMPSQVLRTGNSSKKGISGENVATAAAEKTGVTSGTNS 1638
The following BLAST results are available for this feature:
BLAST of NO09G02270.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27594.13.700e-937.505 -3 exoribonuclease 1 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G02270NO09G02270Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G02270.1NO09G02270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G02270.1.cds1NO09G02270.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G02270.1 ID=NO09G02270.1|Name=NO09G02270.1|organism=Nannochloropsis oceanica|type=mRNA|length=735bp
ATGGCGAGGATTCTGGGCATGCTCTCGTTGAAGGGGAAGAAGGAAGATAA
GGAGGAGAAGGAGGAGAAGGAGGACGAGGCGGACAACACAATGGTAGCAA
AGAACACAGCGGGCGAAGCAGAAGGAGGGGTAGGGGTGGACGCCACGGGC
AGCTTGAAGGGCTTGCTGAAGTTGAATGGCAGTAACAACAACAACAGCAC
TCCTGCTCCTCCCCCCTCTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AACAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCACCAGGGC
TTTCTCCCTTATCCCCGCGGACCTGCCGGCCCCGGTGGCCCCGGGCCATT
TTACCATCATCCTCCTCAACCTCCCCCCCCTGGCGGCTACTACTTCCCTC
CCTCCATGCCCGGAGCTTTCATGCCCCCCATGATGATGCCTTACCACGGC
GGCTCTCATCCTCCTCCTCCTCAAGCCACCGTGGTGCCTCGGCGCCCACG
GGAACGGCGTGTTGTTAATATAGTGGGGACCGAGGGACCAGGGAGCGCCG
GAGCGGAGGTCAAGGCGGGGGGAGCGAACAACAACACCCCCACCACTACC
ACCAAGCCAGCCTACATCATGCCTAGCCAGGTCTTGAGGTCGGGCAGCGC
GTCCAAGAAGGTGCTTTCGACGAGCAGTGGTGCGGGAACGGGGGAAGAGA
AGATTGTGGAAGGGGCGAGTAGCGCTGAGAGGTAG
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protein sequence of NO09G02270.1

>NO09G02270.1-protein ID=NO09G02270.1-protein|Name=NO09G02270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=245bp
MARILGMLSLKGKKEDKEEKEEKEDEADNTMVAKNTAGEAEGGVGVDATG
SLKGLLKLNGSNNNNSTPAPPPSQQQQQQQQQQQQQQQQQQQQQQQQHQG
FLPYPRGPAGPGGPGPFYHHPPQPPPPGGYYFPPSMPGAFMPPMMMPYHG
GSHPPPPQATVVPRRPRERRVVNIVGTEGPGSAGAEVKAGGANNNTPTTT
TKPAYIMPSQVLRSGSASKKVLSTSSGAGTGEEKIVEGASSAER*
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mRNA from alignment at chr9:683209..683943-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G02270.1 ID=NO09G02270.1|Name=NO09G02270.1|organism=Nannochloropsis oceanica|type=mRNA|length=735bp|location=Sequence derived from alignment at chr9:683209..683943- (Nannochloropsis oceanica)
ATGGCGAGGATTCTGGGCATGCTCTCGTTGAAGGGGAAGAAGGAAGATAA
GGAGGAGAAGGAGGAGAAGGAGGACGAGGCGGACAACACAATGGTAGCAA
AGAACACAGCGGGCGAAGCAGAAGGAGGGGTAGGGGTGGACGCCACGGGC
AGCTTGAAGGGCTTGCTGAAGTTGAATGGCAGTAACAACAACAACAGCAC
TCCTGCTCCTCCCCCCTCTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AACAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCACCAGGGC
TTTCTCCCTTATCCCCGCGGACCTGCCGGCCCCGGTGGCCCCGGGCCATT
TTACCATCATCCTCCTCAACCTCCCCCCCCTGGCGGCTACTACTTCCCTC
CCTCCATGCCCGGAGCTTTCATGCCCCCCATGATGATGCCTTACCACGGC
GGCTCTCATCCTCCTCCTCCTCAAGCCACCGTGGTGCCTCGGCGCCCACG
GGAACGGCGTGTTGTTAATATAGTGGGGACCGAGGGACCAGGGAGCGCCG
GAGCGGAGGTCAAGGCGGGGGGAGCGAACAACAACACCCCCACCACTACC
ACCAAGCCAGCCTACATCATGCCTAGCCAGGTCTTGAGGTCGGGCAGCGC
GTCCAAGAAGGTGCTTTCGACGAGCAGTGGTGCGGGAACGGGGGAAGAGA
AGATTGTGGAAGGGGCGAGTAGCGCTGAGAGGTAG
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Coding sequence (CDS) from alignment at chr9:683209..683943-

>NO09G02270.1 ID=NO09G02270.1|Name=NO09G02270.1|organism=Nannochloropsis oceanica|type=CDS|length=735bp|location=Sequence derived from alignment at chr9:683209..683943- (Nannochloropsis oceanica)
ATGGCGAGGATTCTGGGCATGCTCTCGTTGAAGGGGAAGAAGGAAGATAA
GGAGGAGAAGGAGGAGAAGGAGGACGAGGCGGACAACACAATGGTAGCAA
AGAACACAGCGGGCGAAGCAGAAGGAGGGGTAGGGGTGGACGCCACGGGC
AGCTTGAAGGGCTTGCTGAAGTTGAATGGCAGTAACAACAACAACAGCAC
TCCTGCTCCTCCCCCCTCTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AACAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCACCAGGGC
TTTCTCCCTTATCCCCGCGGACCTGCCGGCCCCGGTGGCCCCGGGCCATT
TTACCATCATCCTCCTCAACCTCCCCCCCCTGGCGGCTACTACTTCCCTC
CCTCCATGCCCGGAGCTTTCATGCCCCCCATGATGATGCCTTACCACGGC
GGCTCTCATCCTCCTCCTCCTCAAGCCACCGTGGTGCCTCGGCGCCCACG
GGAACGGCGTGTTGTTAATATAGTGGGGACCGAGGGACCAGGGAGCGCCG
GAGCGGAGGTCAAGGCGGGGGGAGCGAACAACAACACCCCCACCACTACC
ACCAAGCCAGCCTACATCATGCCTAGCCAGGTCTTGAGGTCGGGCAGCGC
GTCCAAGAAGGTGCTTTCGACGAGCAGTGGTGCGGGAACGGGGGAAGAGA
AGATTGTGGAAGGGGCGAGTAGCGCTGAGAGGTAG
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Synonyms
Publications