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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr9 | genome | chr9:645469..646848 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G02100.1 vs.
Match: EWM27535.1 (histidinol-phosphate aminotransferase [Nannochloropsis gaditana]) HSP 1 Score: 746.9 bits (1927), Expect = 3.800e-212 Identity = 369/460 (80.22%), Postives = 408/460 (88.70%), Query Frame = 0
Query: 1 MITLTESELALLAGVSGLAVYAAKQTPKCPFHRLVFAVSNVAVLGGGLYILWRSWSEAPPRFVRFL-TAAKKSKQQPRGCVKGEEAKERDQDPRVAAVLGLVRQNILELEPYRCARDDYSEGILLDANENSFGSALPPAERTQQLERYPDPYQQELKEKIGAYRGVRPEQIFVGVGSDEAIDLIMRIFCEPGKDRILVTPPTYGMYKVSAKTNDVGIVAVPLTPDFSVRVSEILQAVASTPRIKVIFLCSPGNPTAKLVPLEVVEQVLKGVEGCMVVVDEAYVDFADANAVSACRLVDRYPNCLVLQTLSKAFGLAGIRCGMAIGHPAVIQVLNNVKAPYNVSKLTSSMAHKAFESGNLAVLKQNVKDILKEKERVVEALGGLSVVKKIHPSDTNFILFEVPQAKDIYQDMAEGGVVARFRGHELHCKDCIRLTIGQPHENDSFLELFKKTTEKYLGKYT 460
MI +TE EL LLAG GLA+YA KQ PKCPFHR++FA SN+ +LGGG+Y+LWRSWS++PP F L T KKS+++ RG K + QD RVAAVL LVR NI ELEPYRCARDDYSEGILLDANENSFGSALPP +R +LERYPDPYQQ LKEKI +R VRPEQIFVGVGSDEAIDLIMR+FCEPG+D+ILVTPPTYGMYKVSAKTNDVGIVAVPLTP+F+VRV E+LQAVA +PR+KVIFLCSPGNPTAKLVPLEVVEQVL+G GCMVVVDEAYVDFA+ANAVSAC+LV++YPNCLVLQTLSKAFGLAGIRCGMAIGHPAVIQVLNNVKAPYNVS+LTS MAHK F + NLAVL+QNV DILKEK RVVEAL GL VKKIHPSDTNFILFEVP+A++IY+DMAE GVVARFRGHELHCKDCIRLTIGQ HEND+FL+LFKKTTEKYLGKYT
Sbjct: 80 MIVITEKELTLLAGAGGLALYAGKQGPKCPFHRMLFAASNLVLLGGGVYVLWRSWSQSPPAFWCSLQTVRKKSRERLRGGKKARGEDAKHQDARVAAVLDLVRPNIWELEPYRCARDDYSEGILLDANENSFGSALPPEDRVLELERYPDPYQQPLKEKIAVFRNVRPEQIFVGVGSDEAIDLIMRVFCEPGRDQILVTPPTYGMYKVSAKTNDVGIVAVPLTPEFAVRVPEVLQAVAVSPRVKVIFLCSPGNPTAKLVPLEVVEQVLQGASGCMVVVDEAYVDFANANAVSACQLVEKYPNCLVLQTLSKAFGLAGIRCGMAIGHPAVIQVLNNVKAPYNVSQLTSHMAHKVFTAENLAVLQQNVSDILKEKTRVVEALQGLPAVKKIHPSDTNFILFEVPRAQEIYRDMAEAGVVARFRGHELHCKDCIRLTIGQAHENDTFLDLFKKTTEKYLGKYT 539
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G02100.1 ID=NO09G02100.1|Name=NO09G02100.1|organism=Nannochloropsis oceanica|type=mRNA|length=1380bp ATGATTACCTTGACAGAGAGCGAGCTGGCCTTGCTGGCGGGGGTGAGCGG CTTGGCAGTGTACGCGGCGAAGCAAACGCCCAAGTGCCCCTTCCACCGCC TCGTCTTTGCCGTTTCCAACGTGGCTGTGCTTGGGGGAGGGCTCTACATC TTGTGGCGCTCCTGGTCCGAGGCCCCACCGCGGTTTGTGCGCTTCTTGAC AGCAGCGAAGAAGAGCAAGCAACAACCACGCGGCTGTGTGAAGGGAGAAG AAGCGAAGGAGCGAGACCAAGACCCGCGCGTGGCTGCCGTACTGGGTTTA GTGCGACAGAACATTTTGGAGCTCGAGCCTTATCGATGTGCGCGGGACGA TTACAGCGAGGGCATCCTGCTGGACGCGAACGAGAATTCGTTCGGCTCGG CATTGCCTCCGGCAGAGCGAACACAGCAGCTGGAACGGTATCCGGACCCA TACCAACAGGAGTTGAAGGAGAAGATTGGCGCCTACCGTGGCGTGCGGCC GGAGCAGATTTTCGTGGGAGTAGGGAGCGACGAAGCAATCGATTTGATAA TGCGGATTTTTTGCGAGCCCGGGAAGGACCGGATTCTGGTGACGCCTCCG ACGTATGGCATGTATAAGGTGTCGGCCAAGACGAATGATGTGGGGATTGT GGCTGTGCCTCTGACGCCTGACTTCTCGGTGCGAGTGTCAGAAATTCTGC AGGCTGTTGCTTCTACTCCACGAATCAAGGTCATTTTCTTGTGTTCTCCT GGGAACCCGACCGCGAAGCTCGTACCATTGGAGGTGGTAGAACAGGTTTT GAAAGGCGTGGAGGGATGTATGGTAGTGGTGGATGAGGCGTATGTGGACT TCGCGGATGCCAATGCCGTGAGTGCTTGTCGGTTGGTTGATCGATACCCA AATTGCCTTGTGCTCCAGACGCTGTCTAAGGCGTTTGGTCTAGCAGGGAT TAGGTGTGGGATGGCCATCGGCCATCCGGCCGTGATTCAGGTGTTGAACA ACGTGAAGGCTCCGTATAATGTGAGTAAGTTGACGAGCAGCATGGCGCAT AAGGCGTTTGAGAGTGGAAATTTGGCGGTGTTAAAGCAGAATGTCAAGGA CATCCTGAAAGAGAAGGAACGGGTGGTGGAGGCTTTGGGGGGGCTGTCAG TCGTGAAAAAAATTCACCCGTCGGATACGAATTTCATCCTGTTTGAGGTG CCCCAGGCGAAAGATATTTACCAGGACATGGCGGAGGGCGGGGTGGTGGC GCGGTTTCGCGGGCATGAGTTGCATTGCAAGGATTGTATTCGGTTGACCA TTGGCCAGCCCCATGAGAACGATTCGTTTCTAGAGTTGTTCAAAAAGACT ACGGAGAAGTATTTGGGGAAGTACACGTAG back to topprotein sequence of NO09G02100.1 >NO09G02100.1-protein ID=NO09G02100.1-protein|Name=NO09G02100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=460bp MITLTESELALLAGVSGLAVYAAKQTPKCPFHRLVFAVSNVAVLGGGLYI LWRSWSEAPPRFVRFLTAAKKSKQQPRGCVKGEEAKERDQDPRVAAVLGL VRQNILELEPYRCARDDYSEGILLDANENSFGSALPPAERTQQLERYPDP YQQELKEKIGAYRGVRPEQIFVGVGSDEAIDLIMRIFCEPGKDRILVTPP TYGMYKVSAKTNDVGIVAVPLTPDFSVRVSEILQAVASTPRIKVIFLCSP GNPTAKLVPLEVVEQVLKGVEGCMVVVDEAYVDFADANAVSACRLVDRYP NCLVLQTLSKAFGLAGIRCGMAIGHPAVIQVLNNVKAPYNVSKLTSSMAH KAFESGNLAVLKQNVKDILKEKERVVEALGGLSVVKKIHPSDTNFILFEV PQAKDIYQDMAEGGVVARFRGHELHCKDCIRLTIGQPHENDSFLELFKKT TEKYLGKYT* back to topmRNA from alignment at chr9:645469..646848+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G02100.1 ID=NO09G02100.1|Name=NO09G02100.1|organism=Nannochloropsis oceanica|type=mRNA|length=1380bp|location=Sequence derived from alignment at chr9:645469..646848+ (Nannochloropsis oceanica) ATGATTACCTTGACAGAGAGCGAGCTGGCCTTGCTGGCGGGGGTGAGCGG
CTTGGCAGTGTACGCGGCGAAGCAAACGCCCAAGTGCCCCTTCCACCGCC
TCGTCTTTGCCGTTTCCAACGTGGCTGTGCTTGGGGGAGGGCTCTACATC
TTGTGGCGCTCCTGGTCCGAGGCCCCACCGCGGTTTGTGCGCTTCTTGAC
AGCAGCGAAGAAGAGCAAGCAACAACCACGCGGCTGTGTGAAGGGAGAAG
AAGCGAAGGAGCGAGACCAAGACCCGCGCGTGGCTGCCGTACTGGGTTTA
GTGCGACAGAACATTTTGGAGCTCGAGCCTTATCGATGTGCGCGGGACGA
TTACAGCGAGGGCATCCTGCTGGACGCGAACGAGAATTCGTTCGGCTCGG
CATTGCCTCCGGCAGAGCGAACACAGCAGCTGGAACGGTATCCGGACCCA
TACCAACAGGAGTTGAAGGAGAAGATTGGCGCCTACCGTGGCGTGCGGCC
GGAGCAGATTTTCGTGGGAGTAGGGAGCGACGAAGCAATCGATTTGATAA
TGCGGATTTTTTGCGAGCCCGGGAAGGACCGGATTCTGGTGACGCCTCCG
ACGTATGGCATGTATAAGGTGTCGGCCAAGACGAATGATGTGGGGATTGT
GGCTGTGCCTCTGACGCCTGACTTCTCGGTGCGAGTGTCAGAAATTCTGC
AGGCTGTTGCTTCTACTCCACGAATCAAGGTCATTTTCTTGTGTTCTCCT
GGGAACCCGACCGCGAAGCTCGTACCATTGGAGGTGGTAGAACAGGTTTT
GAAAGGCGTGGAGGGATGTATGGTAGTGGTGGATGAGGCGTATGTGGACT
TCGCGGATGCCAATGCCGTGAGTGCTTGTCGGTTGGTTGATCGATACCCA
AATTGCCTTGTGCTCCAGACGCTGTCTAAGGCGTTTGGTCTAGCAGGGAT
TAGGTGTGGGATGGCCATCGGCCATCCGGCCGTGATTCAGGTGTTGAACA
ACGTGAAGGCTCCGTATAATGTGAGTAAGTTGACGAGCAGCATGGCGCAT
AAGGCGTTTGAGAGTGGAAATTTGGCGGTGTTAAAGCAGAATGTCAAGGA
CATCCTGAAAGAGAAGGAACGGGTGGTGGAGGCTTTGGGGGGGCTGTCAG
TCGTGAAAAAAATTCACCCGTCGGATACGAATTTCATCCTGTTTGAGGTG
CCCCAGGCGAAAGATATTTACCAGGACATGGCGGAGGGCGGGGTGGTGGC
GCGGTTTCGCGGGCATGAGTTGCATTGCAAGGATTGTATTCGGTTGACCA
TTGGCCAGCCCCATGAGAACGATTCGTTTCTAGAGTTGTTCAAAAAGACT
ACGGAGAAGTATTTGGGGAAGTACACGTAG back to topCoding sequence (CDS) from alignment at chr9:645469..646848+ >NO09G02100.1 ID=NO09G02100.1|Name=NO09G02100.1|organism=Nannochloropsis oceanica|type=CDS|length=1380bp|location=Sequence derived from alignment at chr9:645469..646848+ (Nannochloropsis oceanica) ATGATTACCTTGACAGAGAGCGAGCTGGCCTTGCTGGCGGGGGTGAGCGG CTTGGCAGTGTACGCGGCGAAGCAAACGCCCAAGTGCCCCTTCCACCGCC TCGTCTTTGCCGTTTCCAACGTGGCTGTGCTTGGGGGAGGGCTCTACATC TTGTGGCGCTCCTGGTCCGAGGCCCCACCGCGGTTTGTGCGCTTCTTGAC AGCAGCGAAGAAGAGCAAGCAACAACCACGCGGCTGTGTGAAGGGAGAAG AAGCGAAGGAGCGAGACCAAGACCCGCGCGTGGCTGCCGTACTGGGTTTA GTGCGACAGAACATTTTGGAGCTCGAGCCTTATCGATGTGCGCGGGACGA TTACAGCGAGGGCATCCTGCTGGACGCGAACGAGAATTCGTTCGGCTCGG CATTGCCTCCGGCAGAGCGAACACAGCAGCTGGAACGGTATCCGGACCCA TACCAACAGGAGTTGAAGGAGAAGATTGGCGCCTACCGTGGCGTGCGGCC GGAGCAGATTTTCGTGGGAGTAGGGAGCGACGAAGCAATCGATTTGATAA TGCGGATTTTTTGCGAGCCCGGGAAGGACCGGATTCTGGTGACGCCTCCG ACGTATGGCATGTATAAGGTGTCGGCCAAGACGAATGATGTGGGGATTGT GGCTGTGCCTCTGACGCCTGACTTCTCGGTGCGAGTGTCAGAAATTCTGC AGGCTGTTGCTTCTACTCCACGAATCAAGGTCATTTTCTTGTGTTCTCCT GGGAACCCGACCGCGAAGCTCGTACCATTGGAGGTGGTAGAACAGGTTTT GAAAGGCGTGGAGGGATGTATGGTAGTGGTGGATGAGGCGTATGTGGACT TCGCGGATGCCAATGCCGTGAGTGCTTGTCGGTTGGTTGATCGATACCCA AATTGCCTTGTGCTCCAGACGCTGTCTAAGGCGTTTGGTCTAGCAGGGAT TAGGTGTGGGATGGCCATCGGCCATCCGGCCGTGATTCAGGTGTTGAACA ACGTGAAGGCTCCGTATAATGTGAGTAAGTTGACGAGCAGCATGGCGCAT AAGGCGTTTGAGAGTGGAAATTTGGCGGTGTTAAAGCAGAATGTCAAGGA CATCCTGAAAGAGAAGGAACGGGTGGTGGAGGCTTTGGGGGGGCTGTCAG TCGTGAAAAAAATTCACCCGTCGGATACGAATTTCATCCTGTTTGAGGTG CCCCAGGCGAAAGATATTTACCAGGACATGGCGGAGGGCGGGGTGGTGGC GCGGTTTCGCGGGCATGAGTTGCATTGCAAGGATTGTATTCGGTTGACCA TTGGCCAGCCCCATGAGAACGATTCGTTTCTAGAGTTGTTCAAAAAGACT ACGGAGAAGTATTTGGGGAAGTACACGTAG back to top
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