NO09G01900.1, NO09G01900.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G01900.1
Unique NameNO09G01900.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1976
Alignment locationchr9:589915..592171 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:589915..592171 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G01900.1 vs.
Match: EWM27600.1 (phosphoglycerate mutase [Nannochloropsis gaditana])

HSP 1 Score: 500.7 bits (1288), Expect = 2.700e-138
Identity = 233/264 (88.26%), Postives = 253/264 (95.83%), Query Frame = 0 
Query:    1 MMAGEKKYQVVLVRHGESTWNDENKFTGWYDCPLSVKGLEEAKEAGKALKAANLKFDLAYTSVLRRAIHTLWLCLEELDLMWIPVKKNWRLNERHYGALQGLNKKETVEKHGIEQVNIWRRSYDIPPPVVDTSSEHYPGNDPKYADVPKSELPLTESLKTTKARFLPLWEDEIVPDIKAGKKLVIAAHGNTIRALVQHLDGISEEVICELNVPTGVPLIYDLDENMKPVKHPDAIAPLQGHYLGDQKKIREKIAGVAAQTGPKK 265
            MMAG+KKY++VLVRHGESTWNDEN+FTGWYDCPLS+KGL+EA+EAGKALK ANL+FD+AYTSVLRRAIHTLW+CLEELDLMWIPVKKNWRLNERHYGALQGLNKKETV+KHGIEQVNIWRRSYDIPPP VD SSEHYPGNDPKYADV KS LP+TESLKTTKARFLPLWE+EI+PDIKAGK++VIAAHGNTIRALVQHLD ISE+VIC LNVPTGVPLIY+LDENMKP+KH DAIAPLQGHYLGDQ+KIR KI GVAAQTG KK
Sbjct:   57 MMAGDKKYKIVLVRHGESTWNDENRFTGWYDCPLSIKGLKEAEEAGKALKEANLRFDMAYTSVLRRAIHTLWMCLEELDLMWIPVKKNWRLNERHYGALQGLNKKETVDKHGIEQVNIWRRSYDIPPPPVDKSSEHYPGNDPKYADVDKSVLPVTESLKTTKARFLPLWENEIIPDIKAGKRIVIAAHGNTIRALVQHLDNISEDVICGLNVPTGVPLIYELDENMKPIKHADAIAPLQGHYLGDQEKIRAKIEGVAAQTGGKK 320
The following BLAST results are available for this feature:
BLAST of NO09G01900.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27600.12.700e-13888.26phosphoglycerate mutase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G01900NO09G01900Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G01900.1NO09G01900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G01900.1.cds1NO09G01900.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G01900.1.cds2NO09G01900.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G01900.1 ID=NO09G01900.1|Name=NO09G01900.1|organism=Nannochloropsis oceanica|type=mRNA|length=1976bp
AGAGCGCGGTAGAAACGTGGCTGTGGGTCATCGGAGAGGAAGATGGTAGA
GAATTTGAGCATAATGTCACAAGTTTTATGGTACTTGGAGGCAAAAGGCA
GGTCGTGGAATGCCACGGAGACGTGGCGAATTGGATTGTCCTAGCCCGTC
GCCAACGCCCTCTAGAGGCCCTCCGATTCATGACCTCTGTACATATGTGA
CCAGTCCTAGGCCTCCAGCCTTGTGGTGTCCACCACGAAATCCATCTCTG
GCTTCGTATGCCTGGGTGCTGGTTACCAGAGAGGTCTTCAGGAGACGCAC
ACAGAATGCCTCCTCGCCCTCGCCCTCGCCTCCCCTTATCCTCCACACAC
CGCCCTACAACAACACCCTTATGTTTTCCTCGCGCACTTCCACCACCCGC
CCACCCATAGTATTATAATAGCTCACGCCCTTCGTTTCTACTTCTATTCC
GCCTCGGACGCAAGCTTCCATGTCTCGCGGAGTGGTATGTAGCAAGGATT
GTCGGAGTAATCGAGCAGCGTGCTCGTGACTGCAGGTGCTCTAGATGCCC
TGTCCTCCTTTTTTAACTTGAATCTTAACAAGTCACGCCACATTCTACTC
TGACAGATTCTAGTGCTGGCCTTGCTAGCCACGGCATCGACCACCAGAGC
TTTTTTCGGGCACGTTGGTCCTCGTACCGCGTCCTCCGTCGCCAACGCTC
TACGTCTCGGAAACCGTCACGCAGCCACATCTGCCCTCTCTATGATGGCA
GGCGAGAAAAAATACCAGGTGGTGTTGGTCCGGCATGGAGAAAGCACGTG
GAATGACGAGAACAAGTTCACGGGGTGGTATGATTGCCCCTTGTCGGTCA
AGGGGTTGGAGGAGGCTAAGGAGGCAGGCAAGGCGCTCAAGGCGGCAAAC
TTGAAGTTTGATCTGGCGTACACCTCGGTATTGCGTCGGGCGATCCACAC
CTTGTGGTTGTGTTTGGAGGAATTGGATTTGATGTGGATCCCGGTGAAGA
AGAACTGGCGATTGAACGAGCGGCACTATGGCGCTCTCCAAGGCTTGAAT
AAGAAAGAAACCGTGGAAAAGCACGGCATCGAACAAGTCAACATTTGGCG
CCGCTCCTACGACATCCCCCCTCCCGTCGTCGATACCTCCTCCGAGCACT
ACCCAGGCAACGACCCCAAATACGCTGATGTTCCCAAGAGTGAATTGCCG
TTGACCGAGTCTTTGAAGACGACCAAAGCTCGTTTTTTGCCTCTGTGGGA
AGATGAGATCGTGCCTGACATCAAGGCAGGGAAGAAATTGGTCATTGCTG
CGCATGGCAACACGATTCGGGCGCTGGTGCAGCACTTGGACGGGATCTCC
GAGGAGGTGATTTGTGAGTTGAATGTCCCAACAGGCGTGCCCCTGATTTA
TGATCTAGATGAGAACATGAAACCGGTGAAGCATCCCGATGCGATCGCGC
CGTTACAAGGACACTACTTGGGGGACCAGAAGAAGATCCGCGAGAAAATT
GCGGGAGTGGCGGCGCAGACGGGACCCAAGAAGTAGAATAGCGCAGATGA
AACGTAGGTTATCTTTATCGTCATTTATGTATGTGTGTTCTTCGTGATTT
GATTAGCCCTGAGGGAGGGGTGGGTAAGATGAGTGGAGGAGGCCAGAGGT
GTAGCTGGAGAGCGTTTCGCAAATGCGAGGTGTGTGTGGATGCCGGGTTT
GGTCAAATGGCTGTGTAATTCCCATTTTTTGTTCTTTTCAATTAAAAAAA
GAGAAGTTGGAATGGAGGGTGTGTGAGAGTTCAATTTAAGAAGGGGAAGG
GTCGTCATTCGCTGTCGTGGTTGGCAGCTCTTCTCGACCTCCCCACCAAA
AGGAAGAAAGAAAGAAAAAGAGACGGGTGGAAGGCAAGGAGAAGGGGAAT
TCGGCTGTATGTGAAAGAAATTACGTTTTTGTTTAATAGGAGGTCACTAT
CCAGCATGGGACTTGTACAAGGGGGC
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protein sequence of NO09G01900.1

>NO09G01900.1-protein ID=NO09G01900.1-protein|Name=NO09G01900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=265bp
MMAGEKKYQVVLVRHGESTWNDENKFTGWYDCPLSVKGLEEAKEAGKALK
AANLKFDLAYTSVLRRAIHTLWLCLEELDLMWIPVKKNWRLNERHYGALQ
GLNKKETVEKHGIEQVNIWRRSYDIPPPVVDTSSEHYPGNDPKYADVPKS
ELPLTESLKTTKARFLPLWEDEIVPDIKAGKKLVIAAHGNTIRALVQHLD
GISEEVICELNVPTGVPLIYDLDENMKPVKHPDAIAPLQGHYLGDQKKIR
EKIAGVAAQTGPKK*
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mRNA from alignment at chr9:589915..592171+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G01900.1 ID=NO09G01900.1|Name=NO09G01900.1|organism=Nannochloropsis oceanica|type=mRNA|length=2257bp|location=Sequence derived from alignment at chr9:589915..592171+ (Nannochloropsis oceanica)
AGAGCGCGGTAGAAACGTGGCTGTGGGTCATCGGAGAGGAAGATGGTAGA
GAATTTGAGCATAATGTCACAAGTTTTATGGTACTTGGAGGCAAAAGGCA
GGTCGTGGAATGCCACGGAGACGTGGCGAATTGGATTGTCCTAGCCCGTC
GCCAACGCCCTCTAGAGGCCCTCCGATTCATGACCTCTGTACATATGTGA
CCAGTCCTAGGCCTCCAGCCTTGTGGTGTCCACCACGAAATCCATCTCTG
GCTTCGTATGCCTGGGTGCTGGTTACCAGAGAGGTCTTCAGGAGACGCAC
ACAGAATGCCTCCTCGCCCTCGCCCTCGCCTCCCCTTATCCTCCACACAC
CGCCCTACAACAACACCCTTATGTTTTCCTCGCGCACTTCCACCACCCGC
CCACCCATAGTATTATAATAGCTCACGCCCTTCGTTTCTACTTCTATTCC
GCCTCGGACGCAAGCTTCCATGTCTCGCGGAGTGGTATGTAGCAAGGATT
GTCGGAGTAATCGAGCAGCGTGCTCGTGACTGCAGGTGCTCTAGATGCCC
TGTCCTCCTTTTTTAACTTGAATCTTAACAAGTCACGCCACATTCTACTC
TGACAGATTCTAGTGCTGGCCTTGCTAGCCACGGCATCGACCACCAGAGC
TTTTTTCGGGCACGTTGGTCCTCGTACCGCGTCCTCCGTCGCCAACGCTC
TACGTCTCGGAAACCGTCACGCAGCCACATCTGCCCTCTCTATGATGGCA
GGCGAGAAAAAATACCAGGTGGTGTTGGTCCGGCATGGAGAAAGCACGTG
GAATGACGAGAACAAGTTCACGGGGTGGTATGATTGCCCCTTGTCGGTCA
AGGGGTTGGAGGAGGCTAAGGAGGCAGGCAAGGCGCTCAAGGCGGCAAAC
TTGAAGTTTGATCTGGCGTACACCTCGGTATTGCGTCGGGCGATCCACAC
CTTGTGGTTGTGTTTGGAGGAATTGGATTTGATGTGGATCCCGGTGAAGA
AGAACTGGCGATTGAACGAGGTAATGCGGGATGATTGTGGGAGGGAAGGA
TAATTGTATAACAAATTGGGAATGAAGCTTGAGCGGAGATGGCGAGTTTT
TGAAATGTATGCTTTCGGAAATTTATATTCCCCGTTGTGTAAATATAATG
CCTTTTACTTTATTGAAGGACCAGCAAAAAGGAAGTTGTCGGACTCTATG
TCTACATAGAGTGGATAGGGTCAAATTCGAGATCGATTTTTTTTTCCGTG
TTCTCCTCTCACTTCCCTTGTCTTGTCTTCTCCTCCCCCCCGCATCTATA
GCGGCACTATGGCGCTCTCCAAGGCTTGAATAAGAAAGAAACCGTGGAAA
AGCACGGCATCGAACAAGTCAACATTTGGCGCCGCTCCTACGACATCCCC
CCTCCCGTCGTCGATACCTCCTCCGAGCACTACCCAGGCAACGACCCCAA
ATACGCTGATGTTCCCAAGAGTGAATTGCCGTTGACCGAGTCTTTGAAGA
CGACCAAAGCTCGTTTTTTGCCTCTGTGGGAAGATGAGATCGTGCCTGAC
ATCAAGGCAGGGAAGAAATTGGTCATTGCTGCGCATGGCAACACGATTCG
GGCGCTGGTGCAGCACTTGGACGGGATCTCCGAGGAGGTGATTTGTGAGT
TGAATGTCCCAACAGGCGTGCCCCTGATTTATGATCTAGATGAGAACATG
AAACCGGTGAAGCATCCCGATGCGATCGCGCCGTTACAAGGACACTACTT
GGGGGACCAGAAGAAGATCCGCGAGAAAATTGCGGGAGTGGCGGCGCAGA
CGGGACCCAAGAAGTAGAATAGCGCAGATGAAACGTAGGTTATCTTTATC
GTCATTTATGTATGTGTGTTCTTCGTGATTTGATTAGCCCTGAGGGAGGG
GTGGGTAAGATGAGTGGAGGAGGCCAGAGGTGTAGCTGGAGAGCGTTTCG
CAAATGCGAGGTGTGTGTGGATGCCGGGTTTGGTCAAATGGCTGTGTAAT
TCCCATTTTTTGTTCTTTTCAATTAAAAAAAGAGAAGTTGGAATGGAGGG
TGTGTGAGAGTTCAATTTAAGAAGGGGAAGGGTCGTCATTCGCTGTCGTG
GTTGGCAGCTCTTCTCGACCTCCCCACCAAAAGGAAGAAAGAAAGAAAAA
GAGACGGGTGGAAGGCAAGGAGAAGGGGAATTCGGCTGTATGTGAAAGAA
ATTACGTTTTTGTTTAATAGGAGGTCACTATCCAGCATGGGACTTGTACA
AGGGGGC
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Coding sequence (CDS) from alignment at chr9:589915..592171+

>NO09G01900.1 ID=NO09G01900.1|Name=NO09G01900.1|organism=Nannochloropsis oceanica|type=CDS|length=795bp|location=Sequence derived from alignment at chr9:589915..592171+ (Nannochloropsis oceanica)
ATGATGGCAGGCGAGAAAAAATACCAGGTGGTGTTGGTCCGGCATGGAGA
AAGCACGTGGAATGACGAGAACAAGTTCACGGGGTGGTATGATTGCCCCT
TGTCGGTCAAGGGGTTGGAGGAGGCTAAGGAGGCAGGCAAGGCGCTCAAG
GCGGCAAACTTGAAGTTTGATCTGGCGTACACCTCGGTATTGCGTCGGGC
GATCCACACCTTGTGGTTGTGTTTGGAGGAATTGGATTTGATGTGGATCC
CGGTGAAGAAGAACTGGCGATTGAACGAGCGGCACTATGGCGCTCTCCAA
GGCTTGAATAAGAAAGAAACCGTGGAAAAGCACGGCATCGAACAAGTCAA
CATTTGGCGCCGCTCCTACGACATCCCCCCTCCCGTCGTCGATACCTCCT
CCGAGCACTACCCAGGCAACGACCCCAAATACGCTGATGTTCCCAAGAGT
GAATTGCCGTTGACCGAGTCTTTGAAGACGACCAAAGCTCGTTTTTTGCC
TCTGTGGGAAGATGAGATCGTGCCTGACATCAAGGCAGGGAAGAAATTGG
TCATTGCTGCGCATGGCAACACGATTCGGGCGCTGGTGCAGCACTTGGAC
GGGATCTCCGAGGAGGTGATTTGTGAGTTGAATGTCCCAACAGGCGTGCC
CCTGATTTATGATCTAGATGAGAACATGAAACCGGTGAAGCATCCCGATG
CGATCGCGCCGTTACAAGGACACTACTTGGGGGACCAGAAGAAGATCCGC
GAGAAAATTGCGGGAGTGGCGGCGCAGACGGGACCCAAGAAGTAG
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Synonyms
Publications