NO09G01150.1, NO09G01150.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G01150.1
Unique NameNO09G01150.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2169
Alignment locationchr9:370291..372710 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:370291..372710 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G01150.1 vs.
Match: XP_005853410.1 (hypothetical protein NGA_0260102 [Nannochloropsis gaditana CCMP526]; EKU22949.1 hypothetical protein NGA_0260102 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 416.4 bits (1069), Expect = 9.100e-113
Identity = 235/359 (65.46%), Postives = 271/359 (75.49%), Query Frame = 0 
Query:    5 STSISSAVHASGDGASCPCPSSSSGLPFPALTLTRRGNERRRRQMAMGYGLLVLCCCSLVSLATAV-----GGGWTSSVTKSSAAGFLGPFLPPSTAAALGPASS--RSSASRRISMPRVHVSYTGTSAGSSPTPTTPVVVQFNHSSVAITQDSSSALSLPPSRAAARTRAIGKPANLPGLSKDDLILLRAGQRVQHQIRNGCMGSGYVVVDVLADSKKVWETLLNFERYPEMIPTIRKTRVTSRWRTITKGLFTLSKFRFRLSVVHKHVPEENRLDFYLDPDSTQYRSILEMAEGFWFIDDRPADRTEGWTRVYMSATVKVNNLVPMWLVEYAAERALKRATSWLKPYVEQNRGGGER 357
            +TS + +    GD ASC   S+SS    PA  LTR G +      A    ++ LC  SLVSLA         GGW++S +K+     L  FL PST+A + P     R    R +  PR  VSYTGTS GSS   ++PVVVQ NHSSVAIT++SS A +LPPS+AAAR RA+ KP NLPGLSK+DLILLRAGQRVQHQIRNGC+GSGYVVVDVLADS  VW TLL FERY +MIPTIRK ++TSRW ++TKG+FTLSKFRFRLSVVHKH PEENRL+FYLDPD  QYRSILEMAEGFW+I+D+PADR EGWTRVYMSATVKVN+LVPMWLV+YAAERALKRATSWLKPYVEQNRG  +R
Sbjct:    5 ATSTNDSGSTGGDEASCSWLSASSDPSVPAAALTRTGGDGTTLFEAKR--VMALCLLSLVSLAAGAPCPIDDGGWSTSRSKT-----LTGFLRPSTSAPVTPLCGGFRPGQRRELLSPR-GVSYTGTSTGSSHM-SSPVVVQLNHSSVAITEESS-AYALPPSQAAARRRALPKPTNLPGLSKEDLILLRAGQRVQHQIRNGCVGSGYVVVDVLADSATVWNTLLGFERYADMIPTIRKVKITSRWPSLTKGVFTLSKFRFRLSVVHKHAPEENRLNFYLDPDCQQYRSILEMAEGFWYIEDQPADRPEGWTRVYMSATVKVNSLVPMWLVDYAAERALKRATSWLKPYVEQNRGEMDR 353
The following BLAST results are available for this feature:
BLAST of NO09G01150.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853410.19.100e-11365.46hypothetical protein NGA_0260102 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G01150NO09G01150Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G01150.1NO09G01150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G01150.1.cds1NO09G01150.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G01150.1.cds2NO09G01150.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G01150.1.cds3NO09G01150.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G01150.1 ID=NO09G01150.1|Name=NO09G01150.1|organism=Nannochloropsis oceanica|type=mRNA|length=2169bp
GAAAGACACGTCCTTCTTGAGCTGACTGTCTGCATGGCTACTTCCAGACG
GAACCCCAAAGCTTCTGTTTTTTCCTTGGCAATAATTAGGAAGGCATCCC
TCTTGTTTCCTGGCGCTGAGTATTTCCGTATCTACCTTTCTCTTCGCCCT
GGCGTGGGTGTGTAAGGGTCAGGAGGCGGGCGGCCTCTCGTGCGTCCGGG
TGGGGATCTCTCCGTGATGACGAGGAGCCGGAGCAACGTGTTGCTCCCGA
ATGAAAAGCATGGCCATGTGCCTTCTTTTTAGAGCTGTTTTTGTCGGGCT
TGGGACAGCCCGCGCCATGATCTCTGTCGCGCTGTGCTGCCACATTCACC
TCTCTTTCTGTCCCTTCCATTTTACCCGTCATCACATGCGACAGGTCTCT
CGCACAACGACCGTTTGGCCCTCGTCCGCTTTGAGACGTGCGTGTTCTGG
TTGCTGCCCCGACTGACTCTCAGCAGCTATCACACAACGAACTGTGCGCT
CCAGCACACCAACATAATGCCCAGCACTAGCACCAGCATCAGCAGTGCTG
TTCATGCCAGCGGGGACGGCGCTTCGTGTCCCTGCCCTTCTTCCTCGTCA
GGCCTTCCCTTTCCCGCCCTGACGCTGACGCGGAGAGGGAATGAACGTCG
CCGCAGGCAGATGGCTATGGGCTATGGGCTTCTCGTTCTCTGTTGTTGCT
CACTTGTCAGCCTAGCAACCGCAGTAGGAGGGGGTTGGACTAGCTCAGTC
ACAAAAAGCAGTGCAGCCGGTTTTCTTGGTCCATTCCTGCCACCCTCTAC
CGCCGCCGCCCTGGGGCCCGCCAGCAGCCGCAGCAGTGCAAGCAGACGGA
TATCGATGCCACGAGTACACGTGAGCTACACAGGCACGAGTGCTGGCTCC
AGTCCTACGCCCACTACGCCTGTGGTTGTCCAATTCAACCATTCCTCTGT
TGCCATTACTCAAGATTCCTCATCCGCCCTATCACTCCCTCCTTCTCGAG
CTGCCGCCCGCACCCGTGCAATCGGCAAGCCAGCCAACCTCCCAGGGCTT
AGCAAAGACGATCTTATCCTCCTGCGCGCCGGTCAGCGGGTACAACATCA
AATCCGTAACGGATGCATGGGAAGTGGTTATGTCGTCGTGGATGTCCTGG
CGGACAGTAAAAAGGTGTGGGAGACTCTGTTGAATTTTGAGAGATACCCA
GAGATGATCCCGACCATTCGGAAGACCCGCGTGACGTCGCGATGGAGGAC
AATTACCAAGGGTCTCTTCACCCTGTCCAAGTTCCGGTTTCGCTTGTCAG
TGGTACACAAGCATGTGCCGGAGGAGAACCGCTTGGACTTTTACTTGGAC
CCGGACTCGACGCAATACCGTAGCATTCTTGAGATGGCGGAGGGCTTCTG
GTTTATTGATGACAGGCCCGCGGATCGCACCGAGGGGTGGACGCGTGTGT
ACATGTCGGCGACGGTCAAGGTGAACAACTTGGTGCCCATGTGGTTGGTC
GAGTACGCGGCAGAGCGAGCGTTAAAGAGGGCTACATCGTGGCTGAAGCC
CTACGTGGAGCAAAACCGGGGAGGGGGCGAGAGAGGGGAGAAGTGAACGA
TAGTCGACAGGGTGGAAAAGGGAGTGGATTATACTGTACAGAAATAGAAA
TGGTGGGAAGACCGCAGACATTTCATATGGGAAAGGTGTGAAAGCTGCGT
TTTGACAAGAGGAAGAATCAATGGTGGGTTGGACGAGCGAGAAGTCCAGA
GGAACGTGTGACATGTGACAATAATGAGCGACACAGGTTGAAGGAAGAGG
GAGCCTTTATTTTAGAGAGTAGCCGACCGCAGTGAGTGCAACGTTGTGAG
AGAAAGATAGAAGAATGGTTAGGACAAAGGGAAAGAAATTTGCCCCGACA
ACCCTGCAGGGCAGGCCGGGGAGAGTGCGCAAGTACTGGCGTGTGTTCGG
GTGATATGCAGTGGTCAGTGGTAATCATTAGCAGTACCATACACAGTGTG
ATTGAGGAGAGTCAGGGAACTAGAGGTAAGAGGCAGTTATTGTCTCGTTC
CCGTTCTTTCGGCGTAAACCTGCTTCATACTGATCAAATCTGAAAACGAA
CCCAGGACTTGATTCAAACAAGAAAACAAGAAAATGGGGAAAAGAAATAA
TAGCGGTATTTGGTAAACA
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protein sequence of NO09G01150.1

>NO09G01150.1-protein ID=NO09G01150.1-protein|Name=NO09G01150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=360bp
MPSTSTSISSAVHASGDGASCPCPSSSSGLPFPALTLTRRGNERRRRQMA
MGYGLLVLCCCSLVSLATAVGGGWTSSVTKSSAAGFLGPFLPPSTAAALG
PASSRSSASRRISMPRVHVSYTGTSAGSSPTPTTPVVVQFNHSSVAITQD
SSSALSLPPSRAAARTRAIGKPANLPGLSKDDLILLRAGQRVQHQIRNGC
MGSGYVVVDVLADSKKVWETLLNFERYPEMIPTIRKTRVTSRWRTITKGL
FTLSKFRFRLSVVHKHVPEENRLDFYLDPDSTQYRSILEMAEGFWFIDDR
PADRTEGWTRVYMSATVKVNNLVPMWLVEYAAERALKRATSWLKPYVEQN
RGGGERGEK*
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mRNA from alignment at chr9:370291..372710-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G01150.1 ID=NO09G01150.1|Name=NO09G01150.1|organism=Nannochloropsis oceanica|type=mRNA|length=2420bp|location=Sequence derived from alignment at chr9:370291..372710- (Nannochloropsis oceanica)
GAAAGACACGTCCTTCTTGAGCTGACTGTCTGCATGGCTACTTCCAGACG
GAACCCCAAAGCTTCTGTTTTTTCCTTGGCAATAATTAGGAAGGCATCCC
TCTTGTTTCCTGGCGCTGAGTATTTCCGTATCTACCTTTCTCTTCGCCCT
GGCGTGGGTGTGTAAGGGTCAGGAGGCGGGCGGCCTCTCGTGCGTCCGGG
TGGGGATCTCTCCGTGATGACGAGGAGCCGGAGCAACGTGTTGCTCCCGA
ATGAAAAGCATGGCCATGTGCCTTCTTTTTAGAGCTGTTTTTGTCGGGCT
TGGGACAGCCCGCGCCATGATCTCTGTCGCGCTGTGCTGCCACATTCACC
TCTCTTTCTGTCCCTTCCATTTTACCCGTCATCACATGCGACAGGTCTCT
CGCACAACGACCGTTTGGCCCTCGTCCGCTTTGAGACGTGCGTGTTCTGG
TTGCTGCCCCGACTGACTCTCAGCAGCTATCACACAACGAACTGTGCGCT
CCAGCACACCAACATAATGCCCAGCACTAGCACCAGCATCAGCAGTGCTG
TTCATGCCAGCGGGGACGGCGCTTCGTGTCCCTGCCCTTCTTCCTCGTCA
GGCCTTCCCTTTCCCGCCCTGACGCTGACGCGGAGAGGGAATGAACGTCG
CCGCAGGCAGATGGCTATGGGCTATGGGCTTCTCGTTCTCTGTTGTTGCT
CACTTGTCAGCCTAGCAACCGCAGTAGGAGGGGGTTGGACTAGCTCAGTC
ACAAAAAGCAGTGCAGCCGGTTTTCTTGGTCCATTCCTGCCACCCTCTAC
CGCCGCCGCCCTGGGGCCCGCCAGCAGCCGCAGCAGTGCAAGCAGACGGA
TATCGATGCCACGAGTACACGTGAGCTACACAGGCACGAGTGCTGGCTCC
AGTCCTACGCCCACTACGCCTGTGGTTGTCCAATTCAACCATTCCTCTGT
TGCCATTACTGTGAGTCAGACGAAAAGTGAAAAACGACTCGTCCTCATTC
TCCCCCTCATTCATCCACGTACCAATCATCTCACATTCCTTCCTCCTTTT
AAATACAGCAAGATTCCTCATCCGCCCTATCACTCCCTCCTTCTCGAGCT
GCCGCCCGCACCCGTGCAATCGGCAAGCCAGCCAACCTCCCAGGGCTTAG
CAAAGACGATCTTATCCTCCTGCGCGCCGGTCAGCGGGTACAACATCAAA
TCCGTAACGGATGCATGGGAAGTGGTTATGTCGTCGTGGATGTCCTGGCG
GACAGTAAAAAGGTGTGGGAGACTCTGTTGAATTTTGAGAGATACCCAGA
GATGATCCCGACCATTCGGAAGACCCGCGTGACGTCGCGATGGAGGACAA
TTACCAAGGGTCTCTTCACCCTGTCCAAGTTCCGGTTTCGCTTGTCAGTG
GTACACAAGCATGTGCCGGAGGAGGTATGTTCTGTCGAAAAAAGGAGACC
GGATAGTGTCGGTCGTATCCTAGGCTTGCTCTGCCGGATCACATATGGAT
GTTAAGATCACTCACGTCGCCCTTCCTCCCTCCCTTCCCCCTTCCGTCCC
TCACAACCCCCCCCCTTCCCTCCACAGAACCGCTTGGACTTTTACTTGGA
CCCGGACTCGACGCAATACCGTAGCATTCTTGAGATGGCGGAGGGCTTCT
GGTTTATTGATGACAGGCCCGCGGATCGCACCGAGGGGTGGACGCGTGTG
TACATGTCGGCGACGGTCAAGGTGAACAACTTGGTGCCCATGTGGTTGGT
CGAGTACGCGGCAGAGCGAGCGTTAAAGAGGGCTACATCGTGGCTGAAGC
CCTACGTGGAGCAAAACCGGGGAGGGGGCGAGAGAGGGGAGAAGTGAACG
ATAGTCGACAGGGTGGAAAAGGGAGTGGATTATACTGTACAGAAATAGAA
ATGGTGGGAAGACCGCAGACATTTCATATGGGAAAGGTGTGAAAGCTGCG
TTTTGACAAGAGGAAGAATCAATGGTGGGTTGGACGAGCGAGAAGTCCAG
AGGAACGTGTGACATGTGACAATAATGAGCGACACAGGTTGAAGGAAGAG
GGAGCCTTTATTTTAGAGAGTAGCCGACCGCAGTGAGTGCAACGTTGTGA
GAGAAAGATAGAAGAATGGTTAGGACAAAGGGAAAGAAATTTGCCCCGAC
AACCCTGCAGGGCAGGCCGGGGAGAGTGCGCAAGTACTGGCGTGTGTTCG
GGTGATATGCAGTGGTCAGTGGTAATCATTAGCAGTACCATACACAGTGT
GATTGAGGAGAGTCAGGGAACTAGAGGTAAGAGGCAGTTATTGTCTCGTT
CCCGTTCTTTCGGCGTAAACCTGCTTCATACTGATCAAATCTGAAAACGA
ACCCAGGACTTGATTCAAACAAGAAAACAAGAAAATGGGGAAAAGAAATA
ATAGCGGTATTTGGTAAACA
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Coding sequence (CDS) from alignment at chr9:370291..372710-

>NO09G01150.1 ID=NO09G01150.1|Name=NO09G01150.1|organism=Nannochloropsis oceanica|type=CDS|length=1080bp|location=Sequence derived from alignment at chr9:370291..372710- (Nannochloropsis oceanica)
ATGCCCAGCACTAGCACCAGCATCAGCAGTGCTGTTCATGCCAGCGGGGA
CGGCGCTTCGTGTCCCTGCCCTTCTTCCTCGTCAGGCCTTCCCTTTCCCG
CCCTGACGCTGACGCGGAGAGGGAATGAACGTCGCCGCAGGCAGATGGCT
ATGGGCTATGGGCTTCTCGTTCTCTGTTGTTGCTCACTTGTCAGCCTAGC
AACCGCAGTAGGAGGGGGTTGGACTAGCTCAGTCACAAAAAGCAGTGCAG
CCGGTTTTCTTGGTCCATTCCTGCCACCCTCTACCGCCGCCGCCCTGGGG
CCCGCCAGCAGCCGCAGCAGTGCAAGCAGACGGATATCGATGCCACGAGT
ACACGTGAGCTACACAGGCACGAGTGCTGGCTCCAGTCCTACGCCCACTA
CGCCTGTGGTTGTCCAATTCAACCATTCCTCTGTTGCCATTACTCAAGAT
TCCTCATCCGCCCTATCACTCCCTCCTTCTCGAGCTGCCGCCCGCACCCG
TGCAATCGGCAAGCCAGCCAACCTCCCAGGGCTTAGCAAAGACGATCTTA
TCCTCCTGCGCGCCGGTCAGCGGGTACAACATCAAATCCGTAACGGATGC
ATGGGAAGTGGTTATGTCGTCGTGGATGTCCTGGCGGACAGTAAAAAGGT
GTGGGAGACTCTGTTGAATTTTGAGAGATACCCAGAGATGATCCCGACCA
TTCGGAAGACCCGCGTGACGTCGCGATGGAGGACAATTACCAAGGGTCTC
TTCACCCTGTCCAAGTTCCGGTTTCGCTTGTCAGTGGTACACAAGCATGT
GCCGGAGGAGAACCGCTTGGACTTTTACTTGGACCCGGACTCGACGCAAT
ACCGTAGCATTCTTGAGATGGCGGAGGGCTTCTGGTTTATTGATGACAGG
CCCGCGGATCGCACCGAGGGGTGGACGCGTGTGTACATGTCGGCGACGGT
CAAGGTGAACAACTTGGTGCCCATGTGGTTGGTCGAGTACGCGGCAGAGC
GAGCGTTAAAGAGGGCTACATCGTGGCTGAAGCCCTACGTGGAGCAAAAC
CGGGGAGGGGGCGAGAGAGGGGAGAAGTGA
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Synonyms
Publications