NO09G01050.1, NO09G01050.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G01050.1
Unique NameNO09G01050.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1091
Alignment locationchr9:351050..352277 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:351050..352277 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G01050.1 vs.
Match: EWM27697.1 (pre-mrna-splicing factor [Nannochloropsis gaditana])

HSP 1 Score: 382.5 bits (981), Expect = 1.100e-102
Identity = 219/261 (83.91%), Postives = 236/261 (90.42%), Query Frame = 0 
Query:    7 MTTAAKSTWNSKQGGASDLGSWSLGGQTSRQFSVLDMPAHKTLKYRKTGQNTAAELRKKDLRSVLDEKERAAHMAKLQERGKGGDLGAREELRRLEAGEAAATPLLLKDKEELRQATQRFDDRDDEANDDDDDAGGVGGTGIESDLDSSDDSDDDDDDDDEDLLRLELEKIKQEREEARRKQEDEDKAEAARMKEDEINAAALKGNPLLASGTGSAQIKRKWNDDVVFKNQSRGETEKKKKFVNDTIRNPFHKAFLQRYMK 268
            MTTAAKSTW+SKQG A+DLGSWSLGGQTSRQFSVLDMPAH TLKYRK GQ+T +EL+KKDLR VLDEKER AH+ KLQERGKGGDL AREELR LEAGEAAATPLLLKDKEELR+A QRFDDRDDE +DDDD AG   G   ESDLDSSDDS DD+D+D+E+LLRLELEKIKQERE+ARRKQE+E+KAEAA  KE+EINAAALKGNPLL  G GSAQ+KRKWNDDVVFKNQSRGE EKKKKFVNDTIRNPFHKAFLQRYMK
Sbjct:    1 MTTAAKSTWHSKQGEAADLGSWSLGGQTSRQFSVLDMPAHTTLKYRKPGQDTVSELQKKDLRIVLDEKEREAHLIKLQERGKGGDLQAREELRHLEAGEAAATPLLLKDKEELRKAIQRFDDRDDEVDDDDDHAGDRNGEE-ESDLDSSDDS-DDEDEDEEELLRLELEKIKQEREQARRKQEEEEKAEAAHRKEEEINAAALKGNPLL--GGGSAQMKRKWNDDVVFKNQSRGEGEKKKKFVNDTIRNPFHKAFLQRYMK 257
The following BLAST results are available for this feature:
BLAST of NO09G01050.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27697.11.100e-10283.91pre-mrna-splicing factor [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G01050NO09G01050Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G01050.1NO09G01050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G01050.1.cds1NO09G01050.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G01050.1.cds2NO09G01050.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G01050.1 ID=NO09G01050.1|Name=NO09G01050.1|organism=Nannochloropsis oceanica|type=mRNA|length=1091bp
ATGGACTACCGCATCACCATGACAACGGCAGCCAAATCAACATGGAACTC
TAAGCAGGGGGGGGCCTCTGACCTGGGCAGCTGGAGCCTCGGCGGGCAGA
CGTCCCGGCAATTTTCTGTCCTTGACATGCCCGCGCACAAGACCCTCAAG
TATCGGAAAACGGGCCAAAACACGGCGGCGGAGTTGCGCAAAAAGGATTT
GCGGAGCGTGCTGGACGAGAAGGAGCGGGCGGCACACATGGCCAAGCTGC
AGGAACGTGGCAAGGGAGGGGATTTGGGCGCCCGCGAAGAGCTGCGGCGG
TTGGAGGCGGGAGAGGCCGCAGCCACGCCCTTGTTGCTCAAGGACAAAGA
AGAACTTCGCCAAGCCACCCAGCGCTTTGACGATCGCGATGATGAGGCGA
ATGATGACGATGATGATGCGGGCGGGGTGGGTGGGACCGGGATTGAGAGT
GATTTGGATAGCAGCGACGACAGCGACGATGACGATGACGACGACGACGA
AGACCTGTTACGTTTGGAGTTGGAAAAAATCAAGCAGGAGCGGGAAGAGG
CTCGTCGGAAGCAGGAGGATGAGGACAAGGCCGAGGCAGCCCGAATGAAG
GAGGATGAAATCAATGCGGCGGCCTTGAAGGGAAACCCGCTCCTAGCAAG
TGGTACTGGTAGTGCACAGATCAAGCGTAAATGGAACGACGACGTGGTCT
TCAAGAACCAATCTCGGGGGGAGACGGAGAAGAAGAAGAAGTTTGTAAAC
GATACGATCCGCAATCCGTTCCACAAGGCTTTCTTGCAGCGGTACATGAA
GTAAGAGTTGTGTGTGTACGTGTGAGTGTGTGTTCATCTCATTTCCGTTT
GTCCATAGAAAAATCTGCCTGAAAAACGAAAAAAGAAGGAACGAAAGATT
TCTACCTGACAGTTCATCTAAAAGAGGTTGATACTGAGGGTAACGTCCAA
AGGAAACCTCTCTTTGCCATAAATCAAACAATAATGACATCTAGAGCGAG
CGCCAGCGCCACGCCTCGGTCCTCCTTCTCCTCCTTCAGCTTGTCAAAAA
ATTAACCGGAAATGCATGAGCATACTTTTCTGCAAGTCACG
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protein sequence of NO09G01050.1

>NO09G01050.1-protein ID=NO09G01050.1-protein|Name=NO09G01050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=268bp
MDYRITMTTAAKSTWNSKQGGASDLGSWSLGGQTSRQFSVLDMPAHKTLK
YRKTGQNTAAELRKKDLRSVLDEKERAAHMAKLQERGKGGDLGAREELRR
LEAGEAAATPLLLKDKEELRQATQRFDDRDDEANDDDDDAGGVGGTGIES
DLDSSDDSDDDDDDDDEDLLRLELEKIKQEREEARRKQEDEDKAEAARMK
EDEINAAALKGNPLLASGTGSAQIKRKWNDDVVFKNQSRGETEKKKKFVN
DTIRNPFHKAFLQRYMK*
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mRNA from alignment at chr9:351050..352277+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G01050.1 ID=NO09G01050.1|Name=NO09G01050.1|organism=Nannochloropsis oceanica|type=mRNA|length=1228bp|location=Sequence derived from alignment at chr9:351050..352277+ (Nannochloropsis oceanica)
ATGGTAATCGTGGGGGAAGTGGTGACTTATGTTTGCCGAAGACTGACAAT
TTGGAGGATCCCTTCCTTACTGTCTGCTCCAGTAGCCATACCGCAATCCC
TCCACTAACCACCTCTGCTCCCTCGCTTCGCAAATCACAGGACTACCGCA
TCACCATGACAACGGCAGCCAAATCAACATGGAACTCTAAGCAGGGGGGG
GCCTCTGACCTGGGCAGCTGGAGCCTCGGCGGGCAGACGTCCCGGCAATT
TTCTGTCCTTGACATGCCCGCGCACAAGACCCTCAAGTATCGGAAAACGG
GCCAAAACACGGCGGCGGAGTTGCGCAAAAAGGATTTGCGGAGCGTGCTG
GACGAGAAGGAGCGGGCGGCACACATGGCCAAGCTGCAGGAACGTGGCAA
GGGAGGGGATTTGGGCGCCCGCGAAGAGCTGCGGCGGTTGGAGGCGGGAG
AGGCCGCAGCCACGCCCTTGTTGCTCAAGGACAAAGAAGAACTTCGCCAA
GCCACCCAGCGCTTTGACGATCGCGATGATGAGGCGAATGATGACGATGA
TGATGCGGGCGGGGTGGGTGGGACCGGGATTGAGAGTGATTTGGATAGCA
GCGACGACAGCGACGATGACGATGACGACGACGACGAAGACCTGTTACGT
TTGGAGTTGGAAAAAATCAAGCAGGAGCGGGAAGAGGCTCGTCGGAAGCA
GGAGGATGAGGACAAGGCCGAGGCAGCCCGAATGAAGGAGGATGAAATCA
ATGCGGCGGCCTTGAAGGGAAACCCGCTCCTAGCAAGTGGTACTGGTAGT
GCACAGATCAAGCGTAAATGGAACGACGACGTGGTCTTCAAGAACCAATC
TCGGGGGGAGACGGAGAAGAAGAAGAAGTTTGTAAACGATACGATCCGCA
ATCCGTTCCACAAGGCTTTCTTGCAGCGGTACATGAAGTAAGAGTTGTGT
GTGTACGTGTGAGTGTGTGTTCATCTCATTTCCGTTTGTCCATAGAAAAA
TCTGCCTGAAAAACGAAAAAAGAAGGAACGAAAGATTTCTACCTGACAGT
TCATCTAAAAGAGGTTGATACTGAGGGTAACGTCCAAAGGAAACCTCTCT
TTGCCATAAATCAAACAATAATGACATCTAGAGCGAGCGCCAGCGCCACG
CCTCGGTCCTCCTTCTCCTCCTTCAGCTTGTCAAAAAATTAACCGGAAAT
GCATGAGCATACTTTTCTGCAAGTCACG
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Coding sequence (CDS) from alignment at chr9:351050..352277+

>NO09G01050.1 ID=NO09G01050.1|Name=NO09G01050.1|organism=Nannochloropsis oceanica|type=CDS|length=804bp|location=Sequence derived from alignment at chr9:351050..352277+ (Nannochloropsis oceanica)
ATGGACTACCGCATCACCATGACAACGGCAGCCAAATCAACATGGAACTC
TAAGCAGGGGGGGGCCTCTGACCTGGGCAGCTGGAGCCTCGGCGGGCAGA
CGTCCCGGCAATTTTCTGTCCTTGACATGCCCGCGCACAAGACCCTCAAG
TATCGGAAAACGGGCCAAAACACGGCGGCGGAGTTGCGCAAAAAGGATTT
GCGGAGCGTGCTGGACGAGAAGGAGCGGGCGGCACACATGGCCAAGCTGC
AGGAACGTGGCAAGGGAGGGGATTTGGGCGCCCGCGAAGAGCTGCGGCGG
TTGGAGGCGGGAGAGGCCGCAGCCACGCCCTTGTTGCTCAAGGACAAAGA
AGAACTTCGCCAAGCCACCCAGCGCTTTGACGATCGCGATGATGAGGCGA
ATGATGACGATGATGATGCGGGCGGGGTGGGTGGGACCGGGATTGAGAGT
GATTTGGATAGCAGCGACGACAGCGACGATGACGATGACGACGACGACGA
AGACCTGTTACGTTTGGAGTTGGAAAAAATCAAGCAGGAGCGGGAAGAGG
CTCGTCGGAAGCAGGAGGATGAGGACAAGGCCGAGGCAGCCCGAATGAAG
GAGGATGAAATCAATGCGGCGGCCTTGAAGGGAAACCCGCTCCTAGCAAG
TGGTACTGGTAGTGCACAGATCAAGCGTAAATGGAACGACGACGTGGTCT
TCAAGAACCAATCTCGGGGGGAGACGGAGAAGAAGAAGAAGTTTGTAAAC
GATACGATCCGCAATCCGTTCCACAAGGCTTTCTTGCAGCGGTACATGAA
GTAA
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Synonyms
Publications