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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr9 | genome | chr9:339074..341971 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G01020.1 vs.
Match: EWM27702.1 (Nucleotide-sugar transporter [Nannochloropsis gaditana]) HSP 1 Score: 463.8 bits (1192), Expect = 7.500e-127 Identity = 307/551 (55.72%), Postives = 363/551 (65.88%), Query Frame = 0
Query: 2 LLPES--MKWVALFLLVVQNTALVLLMRSSLTAPGEHYIVTTAVACMECVKVVTCIAMEGWKFKLLPEFLAHLRREILKPRELLLLSVPSLLYTLQNNLLYIALANLDAAIYQVCYQLKILTTALFSVILLKRALSRTKWISLIILTVGVSLTELDAHKVNKS-----SSSSEDQSPTLGFLCVLMACLTSGFAGVWFEKILKNVGSRTPGLLSGKAAAAAPATATAEAAAKDDVSTASSSLLVGAGPTTRRVSTVTPSSTAPSTAPSSPSITASPSSISTSAATAAAANSMWIRNIQMGATSVAMALLAVYSKDGAVVAEKGFFYGYNWAVVGVILLQALGGLVVALVVVHADNIMKGFGSSISIVLSCTLEWLLFDFQPSLLFVLGAGLVNVALFVYQLEGLPRFPAGGSGVARGGGKEEGKGNGNGGVIALLGGLVGMREAGSSSSGSGGSSSFSTPSGGGILPSVHIPKSHARDVKGWFNVGSARKAALSPPAASAISAMYLPFKNSFDIPASSSSSKAGGMAEWRQAHAAITSSRG-GREGGVKEL 545
+LP++ MKWVALFLLVVQNT+LVLLMRSSLT G+HYIV+TAVACMEC+K+VTC+ +E FK L FLAHLR E+LKPRELLLLSVPSLLYT+QNNLLY ALANLDAAIYQVCYQLKILTTALFSV+LLKR+LSRTKW +LIILTVGVS ELDAHK S S+ ++Q+PTLGFLCVLMAC+TSGFAGVWFEKILK VG+R+ +++ T S V A P R +T PSST AAAA+SMW+RNIQMG +SV +A + VYSKDGA VAEKGFF+GYN AVVGV++LQALGGLVVALVVVHADNIMKGFGSS+SI+LSC+LEWLLFDF PSLLF+ GA LVN+AL+VYQ E LP +P G + GNG +E +SG+ S P + H P KGWF SAR+AALSPP SA A ++ +++ + S+ + G A WRQ H+ G GRE K L
Sbjct: 1 MLPKTIPMKWVALFLLVVQNTSLVLLMRSSLTNRGDHYIVSTAVACMECLKMVTCLLVEAQGFKHLSHFLAHLRYEVLKPRELLLLSVPSLLYTVQNNLLYTALANLDAAIYQVCYQLKILTTALFSVLLLKRSLSRTKWTALIILTVGVSFAELDAHKPKASLPDSFPSAGDEQNPTLGFLCVLMACMTSGFAGVWFEKILKGVGTRSKA---------------------NELKTPPISSQVSAPPGGPRGATPQPSST------------------------AAAASSMWVRNIQMGVSSVLVAFMTVYSKDGARVAEKGFFHGYNAAVVGVVVLQALGGLVVALVVVHADNIMKGFGSSLSIILSCSLEWLLFDFYPSLLFLAGAALVNLALYVYQTERLPFWP--------GADCSDAGRQGNG------------KEPDRITSGA------SLP----LTHKSHSPDM-----KGWF-TSSARRAALSPPGPSAPRASFM-YQSLNEASGSTLAHPVKG-AAWRQPHSHQGDGLGMGRESVGKSL 468
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G01020.1 ID=NO09G01020.1|Name=NO09G01020.1|organism=Nannochloropsis oceanica|type=mRNA|length=2160bp
GGAAAAACACAAAGGTCAAAGAGGTAGTCGTTCTCCTGTCGCATGCACCT
AGGCTAGACACGCCGCCTAAACCTCTCTTTCCCCTCCACCTTCGCCCCTG
ATTGGTTCTTCTGTGAGCGTCGCGCATTTGAATCTTGAGGAAAATGCTTC
TGCCAGAGTCCATGAAATGGGTTGCCCTTTTCCTGTTGGTCGTTCAGAAC
ACGGCCCTGGTCCTGCTAATGCGCTCCTCTTTAACAGCCCCCGGCGAACA
CTACATCGTCACCACCGCCGTAGCGTGCATGGAGTGCGTCAAGGTCGTGA
CATGTATAGCCATGGAGGGATGGAAATTCAAACTTCTTCCGGAATTCCTC
GCTCATCTCCGCCGCGAAATTCTCAAGCCCCGCGAGCTCCTCCTCCTCTC
CGTCCCCTCCCTCCTCTACACCCTACAAAACAACCTTCTCTACATTGCAC
TGGCCAACCTAGACGCTGCCATCTACCAAGTCTGCTACCAGCTTAAAATA
CTGACAACAGCCCTATTCTCCGTCATCCTTCTCAAACGCGCCCTAAGCCG
CACCAAGTGGATCTCCCTCATCATCCTCACTGTGGGGGTCTCGCTCACCG
AGCTGGACGCGCATAAAGTGAATAAATCGTCTTCCTCCTCAGAGGATCAG
TCTCCCACGCTTGGTTTCTTGTGCGTGCTCATGGCCTGTCTCACCTCGGG
CTTTGCGGGCGTGTGGTTCGAAAAGATTCTCAAGAATGTGGGCAGTCGTA
CTCCTGGCTTGCTTTCCGGCAAGGCTGCAGCAGCTGCTCCTGCTACTGCT
ACTGCTGAAGCTGCTGCCAAAGATGATGTAAGCACCGCCTCCTCTTCCTT
GCTGGTCGGAGCGGGGCCTACTACCCGTCGGGTGTCCACCGTCACCCCCT
CCTCGACCGCTCCCTCCACCGCTCCCTCCTCTCCCTCCATCACCGCTTCA
CCCTCATCCATCTCTACTTCTGCTGCTACCGCTGCTGCTGCCAACAGCAT
GTGGATCCGCAACATCCAAATGGGCGCCACCTCAGTCGCTATGGCCCTTC
TGGCAGTCTACAGCAAGGATGGAGCTGTCGTTGCCGAGAAAGGATTCTTC
TATGGGTACAACTGGGCGGTAGTCGGCGTCATCCTCCTGCAAGCCTTGGG
CGGGCTTGTCGTGGCCCTGGTGGTCGTACACGCGGACAATATTATGAAGG
GATTTGGCTCGTCCATTTCGATTGTGTTGTCCTGCACGCTCGAATGGCTA
CTATTTGACTTTCAGCCCTCCCTCCTCTTTGTCCTGGGGGCGGGCCTGGT
TAATGTGGCCTTGTTCGTCTATCAACTTGAGGGGCTGCCACGGTTTCCCG
CGGGGGGTAGTGGAGTAGCACGAGGAGGAGGGAAGGAGGAAGGGAAAGGA
AATGGAAATGGGGGCGTGATTGCTCTCCTTGGGGGCCTGGTCGGGATGAG
AGAGGCTGGCAGCAGCTCTAGCGGCAGTGGTGGGTCGTCCTCCTTTTCTA
CCCCATCTGGCGGGGGTATTTTGCCGTCAGTCCACATTCCCAAATCCCAC
GCCCGGGACGTGAAGGGGTGGTTTAACGTGGGGAGTGCTCGTAAAGCTGC
CTTGTCCCCACCAGCTGCGTCTGCGATCTCAGCGATGTATTTGCCTTTTA
AAAACAGCTTTGATATCCCCGCATCCTCCTCTTCCTCGAAAGCGGGAGGA
ATGGCTGAGTGGCGACAAGCACATGCAGCCATCACTAGTAGTAGGGGAGG
GAGGGAGGGAGGAGTAAAGGAATTATTGTAGAGTAGGTGCTGCTGCAGCT
GCAACAGCAGCCCCAGCAACAGCCAAAAGTATACCATGAAACGTGGTGGT
AATTAACATGTGCAGGGAAAAGATCAAATCGAGGAGAAAAGAGGGAGCGG
AGTGACTAGAACGCAGTGCATTTCTAAATCCGAATATTTTCTACATTATT
GCTTTCATATATATAACAACATGCGAACCGAGAATAGGGGGTTTGAACGA
AGGAAAATTAAATTATAAGAGGGATAGCACGCGAAACGTAGCACCAAAAG
TACAACGCCGCTGGTAAGACGCCCCTTCGCAATAGATTAGATAAACAGTC
AGTCCGTCAGTCAGGCTTTGAACTCCCAGTGTGTGAACTCACGCCACATA
AACAAAGAAT back to topprotein sequence of NO09G01020.1 >NO09G01020.1-protein ID=NO09G01020.1-protein|Name=NO09G01020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=546bp
MLLPESMKWVALFLLVVQNTALVLLMRSSLTAPGEHYIVTTAVACMECVK
VVTCIAMEGWKFKLLPEFLAHLRREILKPRELLLLSVPSLLYTLQNNLLY
IALANLDAAIYQVCYQLKILTTALFSVILLKRALSRTKWISLIILTVGVS
LTELDAHKVNKSSSSSEDQSPTLGFLCVLMACLTSGFAGVWFEKILKNVG
SRTPGLLSGKAAAAAPATATAEAAAKDDVSTASSSLLVGAGPTTRRVSTV
TPSSTAPSTAPSSPSITASPSSISTSAATAAAANSMWIRNIQMGATSVAM
ALLAVYSKDGAVVAEKGFFYGYNWAVVGVILLQALGGLVVALVVVHADNI
MKGFGSSISIVLSCTLEWLLFDFQPSLLFVLGAGLVNVALFVYQLEGLPR
FPAGGSGVARGGGKEEGKGNGNGGVIALLGGLVGMREAGSSSSGSGGSSS
FSTPSGGGILPSVHIPKSHARDVKGWFNVGSARKAALSPPAASAISAMYL
PFKNSFDIPASSSSSKAGGMAEWRQAHAAITSSRGGREGGVKELL* back to topmRNA from alignment at chr9:339074..341971- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G01020.1 ID=NO09G01020.1|Name=NO09G01020.1|organism=Nannochloropsis oceanica|type=mRNA|length=2898bp|location=Sequence derived from alignment at chr9:339074..341971- (Nannochloropsis oceanica)
GGAAAAACACAAAGGTGAAAATCGTAAATATTTTGGTATGTGCCCGTTGC
AGGGCACATACCGTGTGTTGAAGGCCACCTGCACCGGAAACAGCACCTAG
ACGACATATTTCTGGATGGATGCGTTGTGCTTATTGGTCACGAAATCAAT
CACCTCCGCCTCGGAGCGCTAGGCGCAGTTTTACATGGTGTGTGAAAACA
TGGTGGCAAAAACAGCACTTGAAAAAATGAATGAGCGTTTCGATCCCTCG
CTGCGCCTTTGCGAAGTTCTTGGTCTCCACACAATGGGTCTTCTTCGTTA
AGCCAGTCGCAGAGACGAAGGAGGAGGATTTGCCGTTGCAGCAGACTCAT
AATGTGGGCATCGAGAACTTCCCATGGTCTGAGGAAAGAGGACGGAGAAG
AGGCGCAGCGCCAGGAGGTTCCGAGTCTATCTTGAGAACGATTTCTTCTT
CATATTTTTCTCACCTCTGTGTCTCCCCATTACTCCCACAGGTCAAAGAG
GTAGTCGTTCTCCTGTCGCATGCACCTAGGCTAGACACGCCGCCTAAACC
TCTCTTTCCCCTCCACCTTCGCCCCTGATTGGTTCTTCTGTGAGCGTCGC
GCATTTGAATCTTGAGGAAAATGCTTCTGCCAGAGTCCATGAAATGGGTT
GCCCTTTTCCTGTTGGTCGTTCAGAACACGGCCCTGGTCCTGCTAATGCG
CTCCTCTTTAACAGCCCCCGGCGAACACTACATCGTCACCACCGCCGTAG
CGTGCATGGAGGTGAGTCTGCTCCCTGGAAGGAAGGGGGACCCCCCTTTC
AAATGTAGCTTACTTTTTGTGTGCTTTATACTGACGCACCATAAACACGT
ACAACCAACGACACAGTGCGTCAAGGTCGTGACATGTATAGCCATGGAGG
GATGGGTAAGTCTCGTCTCGGCGCCTTTGTCTCTTACCATTTCCTTCTCT
TCAATTTGCCTTCCCTTCAGCTACTCTTCTTGCTGTCCAACCCATCTTCC
CTTTCTCCCTCCCTCCACCCCTACCCTCCATTTTTTTGGGGGTAAATATG
TTCATACGCAGAAATTCAAACTTCTTCCGGAATTCCTCGCTCATCTCCGC
CGCGAAATTCTCAAGCCCCGCGAGCTCCTCCTCCTCTCCGTCCCCTCCCT
CCTCTACACCCTACAAAACAACCTTCTCTACATTGCACTGGCCAACCTAG
ACGCTGCCATCTACCAAGTCTGCTACCAGCTTAAAATACTGACAACAGCC
CTATTCTCCGTCATCCTTCTCAAACGCGCCCTAAGCCGCACCAAGTGGAT
CTCCCTCATCATCCTCACTGTGGGGGTCTCGCTCACCGAGCTGGACGCGC
ATAAAGTGAATAAATCGTCTTCCTCCTCAGAGGATCAGTCTCCCACGCTT
GGTTTCTTGTGCGTGCTCATGGCCTGTCTCACCTCGGGCTTTGCGGGCGT
GTGGTTCGAAAAGATTCTCAAGAATGTGGGCAGTCGTACTCCTGGCTTGC
TTTCCGGCAAGGCTGCAGCAGCTGCTCCTGCTACTGCTACTGCTGAAGCT
GCTGCCAAAGATGATGTAAGCACCGCCTCCTCTTCCTTGCTGGTCGGAGC
GGGGCCTACTACCCGTCGGGTGTCCACCGTCACCCCCTCCTCGACCGCTC
CCTCCACCGCTCCCTCCTCTCCCTCCATCACCGCTTCACCCTCATCCATC
TCTACTTCTGCTGCTACCGCTGCTGCTGCCAACAGCATGTGGATCCGCAA
CATCCAAATGGGCGCCACCTCAGTCGCTATGGCCCTTCTGGCAGTCTACA
GCAAGGATGGAGCTGTCGTTGCCGAGAAAGGATTCTTCTATGGGTACAAC
TGGGCGGTAGTCGGCGTCATCCTCCTGCAAGCCTTGGGCGGGCTTGTCGT
GGCCCTGGTGGTCGTACACGCGGACAATATTATGAAGGGATTTGGCTCGT
CCATTTCGATTGTGTTGTCCTGCACGCTCGAATGGCTACTATTTGACTTT
CAGCCCTCCCTCCTCTTTGTCCTGGGGGCGGGCCTGGTTAATGTGGCCTT
GTTCGTCTATCAACTTGAGGGGCTGCCACGGTTTCCCGCGGGGGGTAGTG
GAGTAGCACGAGGAGGAGGGAAGGAGGAAGGGAAAGGAAATGGAAATGGG
GGCGTGATTGCTCTCCTTGGGGGCCTGGTCGGGATGAGAGAGGCTGGCAG
CAGCTCTAGCGGCAGTGGTGGGTCGTCCTCCTTTTCTACCCCATCTGGCG
GGGGTATTTTGCCGTCAGTCCACATTCCCAAATCCCACGCCCGGGACGTG
AAGGGGTGGTTTAACGTGGGGAGTGCTCGTAAAGCTGCCTTGTCCCCACC
AGCTGCGTCTGCGATCTCAGCGATGTATTTGCCTTTTAAAAACAGCTTTG
ATATCCCCGCATCCTCCTCTTCCTCGAAAGCGGGAGGAATGGCTGAGTGG
CGACAAGCACATGCAGCCATCACTAGTAGTAGGGGAGGGAGGGAGGGAGG
AGTAAAGGAATTATTGTAGAGTAGGTGCTGCTGCAGCTGCAACAGCAGCC
CCAGCAACAGCCAAAAGTATACCATGAAACGTGGTGGTAATTAACATGTG
CAGGGAAAAGATCAAATCGAGGAGAAAAGAGGGAGCGGAGTGACTAGAAC
GCAGTGCATTTCTAAATCCGAATATTTTCTACATTATTGCTTTCATATAT
ATAACAACATGCGAACCGAGAATAGGGGGTTTGAACGAAGGAAAATTAAA
TTATAAGAGGGATAGCACGCGAAACGTAGCACCAAAAGTACAACGCCGCT
GGTAAGACGCCCCTTCGCAATAGATTAGATAAACAGTCAGTCCGTCAGTC
AGGCTTTGAACTCCCAGTGTGTGAACTCACGCCACATAAACAAAGAAT back to topCoding sequence (CDS) from alignment at chr9:339074..341971- >NO09G01020.1 ID=NO09G01020.1|Name=NO09G01020.1|organism=Nannochloropsis oceanica|type=CDS|length=1638bp|location=Sequence derived from alignment at chr9:339074..341971- (Nannochloropsis oceanica)
ATGCTTCTGCCAGAGTCCATGAAATGGGTTGCCCTTTTCCTGTTGGTCGT
TCAGAACACGGCCCTGGTCCTGCTAATGCGCTCCTCTTTAACAGCCCCCG
GCGAACACTACATCGTCACCACCGCCGTAGCGTGCATGGAGTGCGTCAAG
GTCGTGACATGTATAGCCATGGAGGGATGGAAATTCAAACTTCTTCCGGA
ATTCCTCGCTCATCTCCGCCGCGAAATTCTCAAGCCCCGCGAGCTCCTCC
TCCTCTCCGTCCCCTCCCTCCTCTACACCCTACAAAACAACCTTCTCTAC
ATTGCACTGGCCAACCTAGACGCTGCCATCTACCAAGTCTGCTACCAGCT
TAAAATACTGACAACAGCCCTATTCTCCGTCATCCTTCTCAAACGCGCCC
TAAGCCGCACCAAGTGGATCTCCCTCATCATCCTCACTGTGGGGGTCTCG
CTCACCGAGCTGGACGCGCATAAAGTGAATAAATCGTCTTCCTCCTCAGA
GGATCAGTCTCCCACGCTTGGTTTCTTGTGCGTGCTCATGGCCTGTCTCA
CCTCGGGCTTTGCGGGCGTGTGGTTCGAAAAGATTCTCAAGAATGTGGGC
AGTCGTACTCCTGGCTTGCTTTCCGGCAAGGCTGCAGCAGCTGCTCCTGC
TACTGCTACTGCTGAAGCTGCTGCCAAAGATGATGTAAGCACCGCCTCCT
CTTCCTTGCTGGTCGGAGCGGGGCCTACTACCCGTCGGGTGTCCACCGTC
ACCCCCTCCTCGACCGCTCCCTCCACCGCTCCCTCCTCTCCCTCCATCAC
CGCTTCACCCTCATCCATCTCTACTTCTGCTGCTACCGCTGCTGCTGCCA
ACAGCATGTGGATCCGCAACATCCAAATGGGCGCCACCTCAGTCGCTATG
GCCCTTCTGGCAGTCTACAGCAAGGATGGAGCTGTCGTTGCCGAGAAAGG
ATTCTTCTATGGGTACAACTGGGCGGTAGTCGGCGTCATCCTCCTGCAAG
CCTTGGGCGGGCTTGTCGTGGCCCTGGTGGTCGTACACGCGGACAATATT
ATGAAGGGATTTGGCTCGTCCATTTCGATTGTGTTGTCCTGCACGCTCGA
ATGGCTACTATTTGACTTTCAGCCCTCCCTCCTCTTTGTCCTGGGGGCGG
GCCTGGTTAATGTGGCCTTGTTCGTCTATCAACTTGAGGGGCTGCCACGG
TTTCCCGCGGGGGGTAGTGGAGTAGCACGAGGAGGAGGGAAGGAGGAAGG
GAAAGGAAATGGAAATGGGGGCGTGATTGCTCTCCTTGGGGGCCTGGTCG
GGATGAGAGAGGCTGGCAGCAGCTCTAGCGGCAGTGGTGGGTCGTCCTCC
TTTTCTACCCCATCTGGCGGGGGTATTTTGCCGTCAGTCCACATTCCCAA
ATCCCACGCCCGGGACGTGAAGGGGTGGTTTAACGTGGGGAGTGCTCGTA
AAGCTGCCTTGTCCCCACCAGCTGCGTCTGCGATCTCAGCGATGTATTTG
CCTTTTAAAAACAGCTTTGATATCCCCGCATCCTCCTCTTCCTCGAAAGC
GGGAGGAATGGCTGAGTGGCGACAAGCACATGCAGCCATCACTAGTAGTA
GGGGAGGGAGGGAGGGAGGAGTAAAGGAATTATTGTAG back to top
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