NO09G00950.1, NO09G00950.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G00950.1
Unique NameNO09G00950.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1168
Alignment locationchr9:326287..328113 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:326287..328113 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G00950.1 vs.
Match: EWM27691.1 (superoxide dismutase [Nannochloropsis gaditana])

HSP 1 Score: 436.4 bits (1121), Expect = 7.800e-119
Identity = 210/299 (70.23%), Postives = 246/299 (82.27%), Query Frame = 0 
Query:   28 TDPGLQPKSAKVVFNNGVSGDIRMTQSDYKSPLEIKLNLKDLTDSVGPWHIHRLPVVSDCSANSTSGHYNPFAVSATYKACKDAAACEAGDLSTKFGPLTGGDVQRAVTDPKLTLFGFNSIMGRSVVIHNQDGIRIACGTIKYEDEEVAMATAEFKTGPYVGKAIFSQPKDNNQADTQIFMDLKMAEGVAAPTAPVAFAVFDAPCGSEGAKLLNPGDLQACKQFENTSPFKPCALGDLSGRHGKLTLPMTGGQAMFITDYLSLSKEGSVMGMSLVVEASGATPAACADIVPARPTLRTL 327
            +DPGLQPK A VVFNNGV+GD+ ++Q+ +KSPLE+KLNL  L DSVGPWHIHRLPV   CSANSTSGHYNPF V+ATYK CKDA  CEAGDLSTKFG LTGGDVQR++TDP LTLFGFNSIMGRS+VIH +DG R ACGTI Y+D+ +  ATAEF  GPYVGKAIF+QP+D+N ADT IFMD+ +A+G AAP+ PV+FAV+DAPCGS GAKLLNPG L AC Q  N SPFKPCALGDLSGRHG L +P T  QA+FITD+L LS + SV+G SLV+E +G TPAACA+I+ +  + R L
Sbjct:   25 SDPGLQPKEAVVVFNNGVTGDVHLSQATFKSPLEMKLNLTTLRDSVGPWHIHRLPVQDGCSANSTSGHYNPFNVTATYKTCKDATECEAGDLSTKFGLLTGGDVQRSITDPHLTLFGFNSIMGRSIVIHEKDGTRFACGTIMYKDQALVTATAEFTEGPYVGKAIFTQPQDSNIADTTIFMDVVVADGSAAPSDPVSFAVYDAPCGSLGAKLLNPGGLPACSQL-NNSPFKPCALGDLSGRHGTLAVPATDAQALFITDFLPLSGDQSVIGKSLVIEKTGTTPAACANIIKSASSSRNL 322
The following BLAST results are available for this feature:
BLAST of NO09G00950.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27691.17.800e-11970.23superoxide dismutase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G00950NO09G00950Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G00950.1NO09G00950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G00950.1.cds1NO09G00950.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00950.1.cds2NO09G00950.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00950.1.cds3NO09G00950.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G00950.1 ID=NO09G00950.1|Name=NO09G00950.1|organism=Nannochloropsis oceanica|type=mRNA|length=1168bp
ACAGACTCCAGCGTGCACTCCCTCTCCAAGACGATATGTGGCCTATTCTC
TTCGTCTGCATCTTTTTCATGGGATCTTCTCATGCCACCGATCGCATGGT
GATGCTCAATATGGTCACGGATCCGGGCCTGCAGCCCAAGAGTGCCAAAG
TTGTGTTCAACAATGGCGTGTCTGGTGACATACGCATGACCCAATCCGAC
TACAAGAGCCCTTTGGAGATAAAGCTGAATCTTAAGGACCTGACGGACTC
GGTGGGGCCGTGGCACATCCACCGCCTGCCTGTCGTGAGCGATTGCTCGG
CCAATAGCACGTCTGGGCACTACAACCCATTCGCCGTCAGTGCCACCTAC
AAGGCCTGCAAGGACGCAGCTGCGTGCGAGGCGGGCGATTTGTCCACCAA
GTTCGGTCCCTTGACGGGAGGAGACGTGCAGAGAGCAGTCACTGACCCAA
AGCTAACGCTTTTTGGGTTCAACAGCATCATGGGACGCTCGGTGGTGATT
CACAACCAAGACGGGATCCGCATTGCTTGCGGCACTATCAAATATGAAGA
CGAGGAAGTGGCCATGGCTACGGCCGAATTCAAGACGGGTCCTTACGTGG
GCAAGGCCATTTTCAGCCAGCCCAAGGACAACAACCAGGCCGACACGCAG
ATTTTTATGGACCTGAAAATGGCGGAGGGTGTAGCAGCTCCCACCGCTCC
TGTGGCCTTCGCTGTCTTCGACGCACCATGCGGCAGTGAAGGGGCAAAGC
TCTTAAATCCAGGTGATTTGCAGGCCTGCAAGCAATTTGAAAACACCTCT
CCCTTCAAACCATGCGCGTTGGGTGACCTCTCCGGCCGACATGGAAAGTT
GACCCTGCCCATGACAGGCGGGCAGGCGATGTTCATCACGGACTATCTGT
CTCTTTCCAAGGAGGGAAGCGTGATGGGCATGTCGTTGGTGGTGGAGGCC
AGCGGGGCTACTCCTGCTGCCTGCGCTGATATTGTGCCCGCACGTCCCAC
TCTCAGAACGCTGCTACGGGTTTCATCTTGAGAAGATTTGTTATCTAGCG
ATGTATATACACATGAACTCTTGAAATGTTTGAGGTGGGAGGGGGGGGAG
TACGAAACGGTTTAATTATAATCGAGGAGAATCAAAGATTTCCCGAAACA
TTAATGAAGGCATCGTCG
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protein sequence of NO09G00950.1

>NO09G00950.1-protein ID=NO09G00950.1-protein|Name=NO09G00950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=332bp
MWPILFVCIFFMGSSHATDRMVMLNMVTDPGLQPKSAKVVFNNGVSGDIR
MTQSDYKSPLEIKLNLKDLTDSVGPWHIHRLPVVSDCSANSTSGHYNPFA
VSATYKACKDAAACEAGDLSTKFGPLTGGDVQRAVTDPKLTLFGFNSIMG
RSVVIHNQDGIRIACGTIKYEDEEVAMATAEFKTGPYVGKAIFSQPKDNN
QADTQIFMDLKMAEGVAAPTAPVAFAVFDAPCGSEGAKLLNPGDLQACKQ
FENTSPFKPCALGDLSGRHGKLTLPMTGGQAMFITDYLSLSKEGSVMGMS
LVVEASGATPAACADIVPARPTLRTLLRVSS*
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mRNA from alignment at chr9:326287..328113-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G00950.1 ID=NO09G00950.1|Name=NO09G00950.1|organism=Nannochloropsis oceanica|type=mRNA|length=1827bp|location=Sequence derived from alignment at chr9:326287..328113- (Nannochloropsis oceanica)
ACAGACTCCAGCGTGCACTCCCTCTCCAAGACGATATGTGGCCTATTCTC
TTCGTCTGCATCTTTTTCATGGGATCTTCTCATGGTACGTAGCTACTCCA
CTACGGTATGGTATCGATCGATCTTCGAGTGTATCGAAGAGGTCCACCTT
CCTTTTTGCTGTCCAACATTCACCTTTTTGACTCTTGTCCTAGCTACCGG
GCACAACACAGAGAGACACTTGAAATGCATACCTTTATTGGGTTGTCGAA
TGGGGGGGCCCGCTTCTTGGGCGAACGCCCCAGCTCACGCTTTAGAATCC
CCCTAGGCATTTCCCAGTAGCCCCTCAAAGCATTCACTAAGCACTGCTCC
TTACACGCCACCACAAACTTCTCACGTTAGCCAACTATATTCGACTCATA
TAATGCCCATGCAAGAATTCTAGTGTCTCGTTATAATGGACATGTTGCCC
TTGTGACTTCCCTTCTTCCGAGCCCCCTTTCAAGATCGATCCTACGTTCC
TACCGTACACATATTTAAATTCACATTTCCTACACTTTGATCCCCAGCCA
CCGATCGCATGGTGATGCTCAATATGGTCACGGATCCGGGCCTGCAGCCC
AAGAGTGCCAAAGTTGTGTTCAACAATGGCGTGTCTGGTGACATACGCAT
GACCCAATCCGACTACAAGAGCCCTTTGGAGATAAAGCTGAATCTTAAGG
ACCTGACGGACTCGGTGGGGCCGTGGCACATCCACCGCCTGCCTGTCGTG
AGCGATTGCTCGGCCAATAGCACGTCTGGGCACTACAACCCATTCGCCGT
CAGTGCCACCTACAAGGCCTGCAAGGACGCAGCTGCGTGCGAGGCGGGCG
ATTTGTCCACCAAGTTCGGTCCCTTGACGGGAGGAGACGTGCAGAGAGCA
GTCACTGACCCAAAGCTAACGCTTTTTGGGTTCAACAGGTGAGGAAGGAG
AAGGCGATGGGGGAGTCTTTTCTCCGGAAAAAGCGCGTTGCTTACTTTTT
TGCTCGCGTCACGGTGGACTATCTTTTCCGTCAGCGCGCTGTCTGCCTTC
TGTCTGTCTGCTCAATCTCTCCCTTACGCTTCTTTGCCGTTTCAACGCAT
TCATCTTTTTCTTTTTCCTTCCTCCTATTCAAAGCATCATGGGACGCTCG
GTGGTGATTCACAACCAAGACGGGATCCGCATTGCTTGCGGCACTATCAA
ATATGAAGACGAGGAAGTGGCCATGGCTACGGCCGAATTCAAGACGGGTC
CTTACGTGGGCAAGGCCATTTTCAGCCAGCCCAAGGACAACAACCAGGCC
GACACGCAGATTTTTATGGACCTGAAAATGGCGGAGGGTGTAGCAGCTCC
CACCGCTCCTGTGGCCTTCGCTGTCTTCGACGCACCATGCGGCAGTGAAG
GGGCAAAGCTCTTAAATCCAGGTGATTTGCAGGCCTGCAAGCAATTTGAA
AACACCTCTCCCTTCAAACCATGCGCGTTGGGTGACCTCTCCGGCCGACA
TGGAAAGTTGACCCTGCCCATGACAGGCGGGCAGGCGATGTTCATCACGG
ACTATCTGTCTCTTTCCAAGGAGGGAAGCGTGATGGGCATGTCGTTGGTG
GTGGAGGCCAGCGGGGCTACTCCTGCTGCCTGCGCTGATATTGTGCCCGC
ACGTCCCACTCTCAGAACGCTGCTACGGGTTTCATCTTGAGAAGATTTGT
TATCTAGCGATGTATATACACATGAACTCTTGAAATGTTTGAGGTGGGAG
GGGGGGGAGTACGAAACGGTTTAATTATAATCGAGGAGAATCAAAGATTT
CCCGAAACATTAATGAAGGCATCGTCG
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Coding sequence (CDS) from alignment at chr9:326287..328113-

>NO09G00950.1 ID=NO09G00950.1|Name=NO09G00950.1|organism=Nannochloropsis oceanica|type=CDS|length=996bp|location=Sequence derived from alignment at chr9:326287..328113- (Nannochloropsis oceanica)
ATGTGGCCTATTCTCTTCGTCTGCATCTTTTTCATGGGATCTTCTCATGC
CACCGATCGCATGGTGATGCTCAATATGGTCACGGATCCGGGCCTGCAGC
CCAAGAGTGCCAAAGTTGTGTTCAACAATGGCGTGTCTGGTGACATACGC
ATGACCCAATCCGACTACAAGAGCCCTTTGGAGATAAAGCTGAATCTTAA
GGACCTGACGGACTCGGTGGGGCCGTGGCACATCCACCGCCTGCCTGTCG
TGAGCGATTGCTCGGCCAATAGCACGTCTGGGCACTACAACCCATTCGCC
GTCAGTGCCACCTACAAGGCCTGCAAGGACGCAGCTGCGTGCGAGGCGGG
CGATTTGTCCACCAAGTTCGGTCCCTTGACGGGAGGAGACGTGCAGAGAG
CAGTCACTGACCCAAAGCTAACGCTTTTTGGGTTCAACAGCATCATGGGA
CGCTCGGTGGTGATTCACAACCAAGACGGGATCCGCATTGCTTGCGGCAC
TATCAAATATGAAGACGAGGAAGTGGCCATGGCTACGGCCGAATTCAAGA
CGGGTCCTTACGTGGGCAAGGCCATTTTCAGCCAGCCCAAGGACAACAAC
CAGGCCGACACGCAGATTTTTATGGACCTGAAAATGGCGGAGGGTGTAGC
AGCTCCCACCGCTCCTGTGGCCTTCGCTGTCTTCGACGCACCATGCGGCA
GTGAAGGGGCAAAGCTCTTAAATCCAGGTGATTTGCAGGCCTGCAAGCAA
TTTGAAAACACCTCTCCCTTCAAACCATGCGCGTTGGGTGACCTCTCCGG
CCGACATGGAAAGTTGACCCTGCCCATGACAGGCGGGCAGGCGATGTTCA
TCACGGACTATCTGTCTCTTTCCAAGGAGGGAAGCGTGATGGGCATGTCG
TTGGTGGTGGAGGCCAGCGGGGCTACTCCTGCTGCCTGCGCTGATATTGT
GCCCGCACGTCCCACTCTCAGAACGCTGCTACGGGTTTCATCTTGA
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Synonyms
Publications