NO09G00920.1, NO09G00920.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G00920.1
Unique NameNO09G00920.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1779
Alignment locationchr9:318380..320393 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:318380..320393 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO09G00920.1 vs.
Match: EWM27683.1 (dnaj subfamily b member 12 [Nannochloropsis gaditana])

HSP 1 Score: 377.9 bits (969), Expect = 3.400e-101
Identity = 206/275 (74.91%), Postives = 229/275 (83.27%), Query Frame = 0 
Query:    1 MEMNKDEAERCLELGRKFMREGSHAKAVKFLDKSLKLYPLPGVKELKTRAEAEGQRATSSTNQSGSGSSSANAGGGSGQVPRRRPSADGKSTSYSRSSGGGDASVGQNGRPYTEEEVVACRAIIHSKKKGHYEVLSISRTATDDEIKKSYRKLALRFHPDKNAAPQADEAFKAISTAFQVLSDPDKRRSYDQFGDDEGPGAGGGQAHPFRHADVSPEEIFNMFFGMNGGGMGGGRPGNFRVYRS-QQEGNPFSRYQQQQQQQQHQRQGQQQNPLG 275
            MEMNKDEAERCLELGRKF+R+GS+AKA+KFLDKSLKLYPLPGV+ LK RAE+E +R+T ST+++G GS+SANA GG+GQ+PRRR    G         GGG +  GQNGR Y+EE+VVACR II SKKKGHYEVLS+SRTATDD+IKKSYRKLAL+FHPDKNAAPQADEAFKAISTAFQVLSDPDKRRSYDQFGDD+G    GGQAHPFRHADVSPEEIFNMFFG+N    GGGRP NFRVYRS   + NPF RYQQQQQ     RQGQ Q PLG
Sbjct:    1 MEMNKDEAERCLELGRKFLRDGSYAKAIKFLDKSLKLYPLPGVEALKARAESEWERSTGSTSRNGGGSNSANADGGAGQLPRRRAPGGGGE------GGGGGSKAGQNGRSYSEEQVVACRTIIQSKKKGHYEVLSVSRTATDDQIKKSYRKLALKFHPDKNAAPQADEAFKAISTAFQVLSDPDKRRSYDQFGDDDGTEGMGGQAHPFRHADVSPEEIFNMFFGVN----GGGRPANFRVYRSHHDQRNPFFRYQQQQQ----HRQGQAQPPLG 261
The following BLAST results are available for this feature:
BLAST of NO09G00920.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27683.13.400e-10174.91dnaj subfamily b member 12 [Nannochloropsis gadita... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G00920NO09G00920Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G00920.1NO09G00920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G00920.1.cds1NO09G00920.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00920.1.cds2NO09G00920.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00920.1.cds3NO09G00920.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G00920.1 ID=NO09G00920.1|Name=NO09G00920.1|organism=Nannochloropsis oceanica|type=mRNA|length=1779bp
ACAGTAGGTAGCAACTACCAGGTCACATCCCGCAACGTAGCCATGGAGAT
GAACAAGGATGAAGCGGAGCGCTGCCTGGAGCTAGGGCGGAAGTTTATGC
GGGAGGGGTCCCATGCCAAGGCCGTCAAGTTCCTGGACAAGTCCCTCAAG
CTGTACCCTTTGCCAGGCGTCAAGGAGCTCAAAACACGGGCTGAAGCCGA
GGGCCAACGGGCGACAAGCAGCACCAATCAGAGCGGGAGTGGGAGCAGCA
GTGCAAATGCGGGCGGGGGTAGTGGGCAAGTGCCTCGGCGACGACCCTCT
GCTGACGGAAAGAGCACAAGCTATAGTAGAAGTAGTGGCGGGGGGGATGC
CAGTGTGGGCCAGAACGGACGGCCGTACACGGAGGAGGAGGTGGTGGCCT
GCCGTGCCATCATCCATTCGAAGAAGAAAGGCCACTATGAGGTCCTGAGT
ATCTCTCGCACTGCCACTGACGACGAGATCAAGAAGTCTTACAGGAAGTT
GGCCTTGAGATTCCATCCCGACAAGAATGCAGCCCCGCAGGCAGACGAGG
CGTTCAAGGCTATCAGCACCGCCTTTCAAGTGCTGAGTGACCCTGACAAG
CGGCGATCATACGATCAGTTCGGGGATGACGAAGGGCCAGGGGCCGGAGG
AGGGCAAGCACACCCCTTCCGACACGCGGACGTGTCGCCCGAGGAGATAT
TTAACATGTTCTTCGGCATGAACGGCGGAGGGATGGGTGGAGGGCGTCCG
GGCAATTTCCGCGTCTATCGTTCCCAACAAGAAGGCAACCCTTTTTCCCG
TTACCAGCAGCAGCAGCAGCAGCAGCAGCATCAGCGACAAGGTCAACAGC
AAAATCCGCTTGGGTACGTTGTAAGCGGAGTCAGGGGAGGGAGGACGGGG
AGGAGTGGGAAAGGAAGGAAGGGACGAGAGGAACGGGAGGACATGCGGAT
CGCATGTCTCGTCTCATTTGCAAAAACGGCGCCATGGCCCAATTCCTGCA
AATGCTTCCCGTCCTCCTTCTCCTTTTTCTCTCGCTCTTCTCATTCCCCC
AAGAGAGCGAGCGGGCTTTCTCATTGAGCCGTACAGATCGGCACCCCATG
CAGCGCGCCACATCAATGGATCACATCCTGCCCAATATTCCCTACTTCGT
GGGCAACACCTTTTCCCGAGACCATGCACGGGACCGGCGGCGCCTCTTCC
AGGTGGAGCGGGAAGTGCAGCAGGCCTACTTGTACGACCTCCAGCGGCAG
TGCGAGGGCCAGAAGCAGGACAAGGCTCGCAGGGTACAAGCGGCGAGGAG
GGTTTTCAATGCGGAGGATAGGGCAAGAAGGATGGCCGAGGCGGACGAGA
TGCCCCTGGAGTCATGCCGGTTGTTCCAGGAGGCGACCCGGTTGCTGTGA
GTAGTAGGGTTGGGAGGGAGGGTTGTACAGTGCCGACGAACGAAATGAGA
GGGCGTTCGGACGAAGGGGGTCTATACTTTGATACCCTAATTCCGAGATT
TTTTCGGAATCAGAGTGGAAGGAGCGGATGTGTGTGGATGTGTTGGAGAG
AAGGAGAGGAGGGGGAAAAAAGGAACGAATGAACGGCTACGGCCAGGGCT
ATGGAAGGTATTTTTTTGTATGTGATAGGCTGCAGAGTGGCGTCGATAGA
GAGAGAGAGGCACGAGACTGGCGACGACGATGAGTGTAGGTGTGTCGGTA
AGGACGTAAGAAGAGAATCAAGAATAGGAAAAAACGAAATGTCTCATTTC
GAGCACATGCCATCTTGTGCAGCGGCCCA
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protein sequence of NO09G00920.1

>NO09G00920.1-protein ID=NO09G00920.1-protein|Name=NO09G00920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=345bp
MEMNKDEAERCLELGRKFMREGSHAKAVKFLDKSLKLYPLPGVKELKTRA
EAEGQRATSSTNQSGSGSSSANAGGGSGQVPRRRPSADGKSTSYSRSSGG
GDASVGQNGRPYTEEEVVACRAIIHSKKKGHYEVLSISRTATDDEIKKSY
RKLALRFHPDKNAAPQADEAFKAISTAFQVLSDPDKRRSYDQFGDDEGPG
AGGGQAHPFRHADVSPEEIFNMFFGMNGGGMGGGRPGNFRVYRSQQEGNP
FSRYQQQQQQQQHQRQGQQQNPLGYVVSGVRGGRTGRSGKGRKGREERED
MRIACLVSFAKTAPWPNSCKCFPSSFSFFSRSSHSPKRASGLSH*
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mRNA from alignment at chr9:318380..320393-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G00920.1 ID=NO09G00920.1|Name=NO09G00920.1|organism=Nannochloropsis oceanica|type=mRNA|length=2014bp|location=Sequence derived from alignment at chr9:318380..320393- (Nannochloropsis oceanica)
ACAGTAGGTAGCAACTACCAGGTCACATCCCGCAACGTAGCCATGGAGAT
GAACAAGGATGAAGCGGAGCGCTGCCTGGAGCTAGGGCGGAAGTTTATGC
GGGAGGGGTCCCATGCCAAGGCCGTCAAGTTCCTGGACAAGTCCCTCAAG
CTGTACCCTTTGCCAGGCGTCAAGGAGCTCAAAACACGGGCTGAAGCCGA
GGGCCAACGGGCGACAAGCAGCACCAATCAGAGCGGGAGTGGGAGCAGCA
GTGCAAATGCGGGCGGGGGTAGTGGGCAAGTGCCTCGGCGACGACCCTCT
GCTGACGGAAAGAGCACAAGCTATAGTAGAAGTAGTGGCGGGGGGGATGC
CAGTGTGGGCCAGAACGGACGGCCGTACACGGAGGAGGAGGTGGTGGCCT
GCCGTGCCATCATCCATTCGAAGAAGAAAGGCCACTATGAGGTCCTGAGT
ATCTCTCGCACTGCCACTGACGACGAGATCAAGAAGTCTTACAGGAAGTT
GGCCTTGAGATTCCATCCCGACAAGAATGCAGCCCCGCAGGCAGACGAGG
CGTTCAAGGTACGAAGGGACGCAAGTGTAGAACTGACGTTACGTTGATTA
AGTCGCCCGGTGTCAGACCGCCTTCTTTATGTTCCCATCATCATGGATAT
ATGAAACGCGCTGTATGCACGCTGACGTTCCTCGCTTTCTCCTGTCTGTC
CCACCTCCAAACCAGGCTATCAGCACCGCCTTTCAAGTGCTGAGTGACCC
TGACAAGCGGCGATCATACGATCAGTTCGGGGATGACGAAGGGCCAGGGG
CCGGAGGAGGGCAAGCACACCCCTTCCGACACGCGGACGTGTCGCCCGAG
GAGATATTTAACATGTTCTTCGGCATGAACGGCGGAGGGATGGGTGGAGG
GCGTCCGGGCAATTTCCGCGTCTATCGTTCCCAACAAGAAGGCAACCCTT
TTTCCCGTTACCAGCAGCAGCAGCAGCAGCAGCAGCATCAGCGACAAGGT
CAACAGCAAAATCCGCTTGGGTACGTTGTAAGCGGAGTCAGGGGAGGGAG
GACGGGGAGGAGTGGGAAAGGAAGGAAGGGACGAGAGGAACGGGAGGACA
TGCGGATCGCATGTCTCGTCTCATTTGCAAAAACGGGTCAGTATATGTTT
CCTTATTTCACCGCCCTATTTTATTCCTTTTCACCATTACCTCCCTTCTT
CTCTTCCCACACAGCGCCATGGCCCAATTCCTGCAAATGCTTCCCGTCCT
CCTTCTCCTTTTTCTCTCGCTCTTCTCATTCCCCCAAGAGAGCGAGCGGG
CTTTCTCATTGAGCCGTACAGATCGGCACCCCATGCAGCGCGCCACATCA
ATGGATCACATCCTGCCCAATATTCCCTACTTCGTGGGCAACACCTTTTC
CCGAGACCATGCACGGGACCGGCGGCGCCTCTTCCAGGTGGAGCGGGAAG
TGCAGCAGGCCTACTTGTACGACCTCCAGCGGCAGTGCGAGGGCCAGAAG
CAGGACAAGGCTCGCAGGGTACAAGCGGCGAGGAGGGTTTTCAATGCGGA
GGATAGGGCAAGAAGGATGGCCGAGGCGGACGAGATGCCCCTGGAGTCAT
GCCGGTTGTTCCAGGAGGCGACCCGGTTGCTGTGAGTAGTAGGGTTGGGA
GGGAGGGTTGTACAGTGCCGACGAACGAAATGAGAGGGCGTTCGGACGAA
GGGGGTCTATACTTTGATACCCTAATTCCGAGATTTTTTCGGAATCAGAG
TGGAAGGAGCGGATGTGTGTGGATGTGTTGGAGAGAAGGAGAGGAGGGGG
AAAAAAGGAACGAATGAACGGCTACGGCCAGGGCTATGGAAGGTATTTTT
TTGTATGTGATAGGCTGCAGAGTGGCGTCGATAGAGAGAGAGAGGCACGA
GACTGGCGACGACGATGAGTGTAGGTGTGTCGGTAAGGACGTAAGAAGAG
AATCAAGAATAGGAAAAAACGAAATGTCTCATTTCGAGCACATGCCATCT
TGTGCAGCGGCCCA
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Coding sequence (CDS) from alignment at chr9:318380..320393-

>NO09G00920.1 ID=NO09G00920.1|Name=NO09G00920.1|organism=Nannochloropsis oceanica|type=CDS|length=1035bp|location=Sequence derived from alignment at chr9:318380..320393- (Nannochloropsis oceanica)
ATGGAGATGAACAAGGATGAAGCGGAGCGCTGCCTGGAGCTAGGGCGGAA
GTTTATGCGGGAGGGGTCCCATGCCAAGGCCGTCAAGTTCCTGGACAAGT
CCCTCAAGCTGTACCCTTTGCCAGGCGTCAAGGAGCTCAAAACACGGGCT
GAAGCCGAGGGCCAACGGGCGACAAGCAGCACCAATCAGAGCGGGAGTGG
GAGCAGCAGTGCAAATGCGGGCGGGGGTAGTGGGCAAGTGCCTCGGCGAC
GACCCTCTGCTGACGGAAAGAGCACAAGCTATAGTAGAAGTAGTGGCGGG
GGGGATGCCAGTGTGGGCCAGAACGGACGGCCGTACACGGAGGAGGAGGT
GGTGGCCTGCCGTGCCATCATCCATTCGAAGAAGAAAGGCCACTATGAGG
TCCTGAGTATCTCTCGCACTGCCACTGACGACGAGATCAAGAAGTCTTAC
AGGAAGTTGGCCTTGAGATTCCATCCCGACAAGAATGCAGCCCCGCAGGC
AGACGAGGCGTTCAAGGCTATCAGCACCGCCTTTCAAGTGCTGAGTGACC
CTGACAAGCGGCGATCATACGATCAGTTCGGGGATGACGAAGGGCCAGGG
GCCGGAGGAGGGCAAGCACACCCCTTCCGACACGCGGACGTGTCGCCCGA
GGAGATATTTAACATGTTCTTCGGCATGAACGGCGGAGGGATGGGTGGAG
GGCGTCCGGGCAATTTCCGCGTCTATCGTTCCCAACAAGAAGGCAACCCT
TTTTCCCGTTACCAGCAGCAGCAGCAGCAGCAGCAGCATCAGCGACAAGG
TCAACAGCAAAATCCGCTTGGGTACGTTGTAAGCGGAGTCAGGGGAGGGA
GGACGGGGAGGAGTGGGAAAGGAAGGAAGGGACGAGAGGAACGGGAGGAC
ATGCGGATCGCATGTCTCGTCTCATTTGCAAAAACGGCGCCATGGCCCAA
TTCCTGCAAATGCTTCCCGTCCTCCTTCTCCTTTTTCTCTCGCTCTTCTC
ATTCCCCCAAGAGAGCGAGCGGGCTTTCTCATTGA
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Synonyms
Publications