NO09G00740.1, NO09G00740.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G00740.1
Unique NameNO09G00740.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length591
Alignment locationchr9:265735..266536 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:265735..266536 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO09G00740.1 vs.
Match: EWM27727.1 (ohcu decarboxylase [Nannochloropsis gaditana])

HSP 1 Score: 269.6 bits (688), Expect = 7.500e-69
Identity = 135/197 (68.53%), Postives = 159/197 (80.71%), Query Frame = 0 
Query:    1 MRTEDHVKL-DGLAKLNVLPVTDLKTELLRICGSRVWVEAVAKTFPHTSPASVLTAMDKAWWSLSKPDYLEAFSAHPCIGDAAALKRKYEAAAMVTSGTDCPAWEADEQKGTIGASEEILQSLAKHNRLYKERFGYIFLVCATGKTADEMLTLLKARMCNEAGYELTVAAAEQSKITVMRLHKLLTSMGAQEDASRL 197
            MR ED  ++ DG+AKLN +PV DL+TELLRICGS  WVE+V KTFPHTS AS+LTAMD+AWWSLS+PDYLEAF+AHP IGD  ALK+K+ A     SG   P WEADEQKG  GA+E+ LQSL  HNRLY+ERFG+IFLVCATGKTADEML +L+ RM NE  YEL +AA EQ+KIT +RLHKLLT +G +ED+SRL
Sbjct:    3 MRAEDQQQMQDGIAKLNAMPVADLRTELLRICGSVSWVESVIKTFPHTSAASILTAMDRAWWSLSRPDYLEAFAAHPRIGDGEALKKKF-ATVPKASGKAGPVWEADEQKGAEGANEKTLQSLVVHNRLYEERFGHIFLVCATGKTADEMLAILQDRMRNEPAYELIMAAGEQNKITALRLHKLLTFLGTREDSSRL 198
The following BLAST results are available for this feature:
BLAST of NO09G00740.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27727.17.500e-6968.53ohcu decarboxylase [Nannochloropsis gaditana][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G00740NO09G00740Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G00740.1NO09G00740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G00740.1.cds1NO09G00740.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00740.1.cds2NO09G00740.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00740.1.cds3NO09G00740.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G00740.1 ID=NO09G00740.1|Name=NO09G00740.1|organism=Nannochloropsis oceanica|type=mRNA|length=591bp
ATGCGAACAGAAGACCATGTCAAGCTAGACGGCTTGGCCAAGCTGAATGT
CCTGCCAGTGACAGATCTGAAGACCGAGCTTCTCCGCATCTGCGGGTCCC
GTGTTTGGGTAGAGGCCGTGGCCAAGACGTTCCCCCACACTTCGCCGGCA
TCTGTCCTGACAGCTATGGACAAGGCCTGGTGGTCCCTGTCCAAACCCGA
TTACCTTGAGGCCTTCTCCGCTCACCCATGCATTGGAGACGCGGCGGCTT
TGAAAAGGAAATACGAGGCGGCGGCCATGGTCACTAGCGGCACAGATTGT
CCGGCATGGGAAGCAGACGAACAAAAAGGGACAATAGGTGCAAGCGAAGA
GATATTGCAAAGCCTGGCGAAGCACAACAGGTTGTACAAGGAACGTTTCG
GGTACATCTTTTTGGTGTGTGCCACGGGCAAGACGGCTGATGAAATGCTT
ACCTTATTGAAAGCCCGTATGTGCAACGAAGCGGGCTATGAATTGACCGT
GGCGGCGGCAGAACAATCGAAGATTACGGTAATGCGGCTGCACAAGCTCT
TGACTTCGATGGGAGCGCAGGAGGACGCAAGTCGCTTATGA
back to top

protein sequence of NO09G00740.1

>NO09G00740.1-protein ID=NO09G00740.1-protein|Name=NO09G00740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=197bp
MRTEDHVKLDGLAKLNVLPVTDLKTELLRICGSRVWVEAVAKTFPHTSPA
SVLTAMDKAWWSLSKPDYLEAFSAHPCIGDAAALKRKYEAAAMVTSGTDC
PAWEADEQKGTIGASEEILQSLAKHNRLYKERFGYIFLVCATGKTADEML
TLLKARMCNEAGYELTVAAAEQSKITVMRLHKLLTSMGAQEDASRL*
back to top

mRNA from alignment at chr9:265735..266536+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G00740.1 ID=NO09G00740.1|Name=NO09G00740.1|organism=Nannochloropsis oceanica|type=mRNA|length=802bp|location=Sequence derived from alignment at chr9:265735..266536+ (Nannochloropsis oceanica)
ATGCGAACAGAAGACCATGTAAGAAGAGGGGTGGGGAAAAATGGCTGACC
AGCGCTCCCCTTTATGTTATGATTGACACGGCCTCTCCTTCATTTCCCAT
TCCTCATCACAAGGTCAAGCTAGACGGCTTGGCCAAGCTGAATGTCCTGC
CAGTGACAGATCTGAAGACCGAGCTTCTCCGCATCTGCGGGTCCCGTGTT
TGGGTAGAGGCCGTGGCCAAGACGTTCCCCCACACTTCGCCGGCATCTGT
CCTGACAGCTATGGACAAGGCCTGGTGGTCCCTGTCCAAACCCGATTACC
TTGAGGCCTTCTCCGCTCACCCATGCATTGGAGACGCGGCGGCTTTGAAA
AGGGTGAGTCATTGTGCCATGCAATTTATCGAATTTTACTGTTTGGAAGA
CTTTTCAATGCGCCCTTTGCAGGAACGCAACCCACCTGTATATTTTTTAT
TTCTCCACAACATAATCAGAAATACGAGGCGGCGGCCATGGTCACTAGCG
GCACAGATTGTCCGGCATGGGAAGCAGACGAACAAAAAGGGACAATAGGT
GCAAGCGAAGAGATATTGCAAAGCCTGGCGAAGCACAACAGGTTGTACAA
GGAACGTTTCGGGTACATCTTTTTGGTGTGTGCCACGGGCAAGACGGCTG
ATGAAATGCTTACCTTATTGAAAGCCCGTATGTGCAACGAAGCGGGCTAT
GAATTGACCGTGGCGGCGGCAGAACAATCGAAGATTACGGTAATGCGGCT
GCACAAGCTCTTGACTTCGATGGGAGCGCAGGAGGACGCAAGTCGCTTAT
GA
back to top

Coding sequence (CDS) from alignment at chr9:265735..266536+

>NO09G00740.1 ID=NO09G00740.1|Name=NO09G00740.1|organism=Nannochloropsis oceanica|type=CDS|length=591bp|location=Sequence derived from alignment at chr9:265735..266536+ (Nannochloropsis oceanica)
ATGCGAACAGAAGACCATGTCAAGCTAGACGGCTTGGCCAAGCTGAATGT
CCTGCCAGTGACAGATCTGAAGACCGAGCTTCTCCGCATCTGCGGGTCCC
GTGTTTGGGTAGAGGCCGTGGCCAAGACGTTCCCCCACACTTCGCCGGCA
TCTGTCCTGACAGCTATGGACAAGGCCTGGTGGTCCCTGTCCAAACCCGA
TTACCTTGAGGCCTTCTCCGCTCACCCATGCATTGGAGACGCGGCGGCTT
TGAAAAGGAAATACGAGGCGGCGGCCATGGTCACTAGCGGCACAGATTGT
CCGGCATGGGAAGCAGACGAACAAAAAGGGACAATAGGTGCAAGCGAAGA
GATATTGCAAAGCCTGGCGAAGCACAACAGGTTGTACAAGGAACGTTTCG
GGTACATCTTTTTGGTGTGTGCCACGGGCAAGACGGCTGATGAAATGCTT
ACCTTATTGAAAGCCCGTATGTGCAACGAAGCGGGCTATGAATTGACCGT
GGCGGCGGCAGAACAATCGAAGATTACGGTAATGCGGCTGCACAAGCTCT
TGACTTCGATGGGAGCGCAGGAGGACGCAAGTCGCTTATGA
back to top
Synonyms
Publications