NO09G00670.1, NO09G00670.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G00670.1
Unique NameNO09G00670.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1239
Alignment locationchr9:245509..246747 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:245509..246747 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G00670.1 vs.
Match: EWM27717.1 (hypothetical protein Naga_100034g23 [Nannochloropsis gaditana])

HSP 1 Score: 360.9 bits (925), Expect = 5.200e-96
Identity = 195/377 (51.72%), Postives = 251/377 (66.58%), Query Frame = 0 
Query:    1 MGDLEATIKGIGVSGTLVYVAMLLYITWRTCFLLFLQPPPATASRQQQLTLPAKKSFHVALFFSALLDLSYYAKLCTGAITSTSFSLHLMALWAELTAFSCVVVVWSRVLNAAKEKDSVLTYVIALDGFVLVWTLVVICLVIVAKDNVDQWVSPSSQPYIFFYLVQALALLSCCLALLYHGIRLQYIVRNHPRWEPLRRERRMRIVLRINAVLSVCTFCFLLRVVLLMAHFIQAEAHQQARFLDPAALVNWYVWCNWVPMCIPASILLFMMKNNPGRERGNI-GGATDGGGGLTLGLAAQAGGGQAGGGAETVGILREWEERLVSLNSSGNTSINRNYWRPNSASLYSPPSPSE--VDAVGPISPAA-ATPLTPATA 374
            M DL ATI+GIG++GT ++  ML  I+WR C   FLQ     A      T  AK  FH+ LF +ALLDL YY  L    +++  +S HLMA WAEL AFS +V++W+R+LNA + KDSV+TYV+ALD F L++TL+VICL IV + N DQWV+ S+QP++FF+ VQA+AL +CCLALLYHGI LQY+VRNHPRW+P+RRERR+R VLRIN  L  CT CFLLRVVLL+A FIQAE+HQQARF DPA L+NWY+WCNWVP C+PA  LL+ + N  G+ R NI GG      G  + + +    G           LR+WEE L+S   +  + +N+  W  N+   Y PP P+E   +    +SPAA   PL  A A
Sbjct:    1 MEDLGATIQGIGITGTFLFAVMLAIISWRICVFYFLQDTQH-APLPTSTTFTAKLCFHIFLFMAALLDLCYYIPLSRELVSAGFYSAHLMAQWAELAAFSMIVILWARLLNAPRGKDSVVTYVVALDAFTLIYTLIVICLAIVVQQNGDQWVTSSNQPFVFFFFVQAVALFACCLALLYHGISLQYLVRNHPRWDPIRRERRLRTVLRINITLMACTVCFLLRVVLLLARFIQAESHQQARFSDPATLINWYIWCNWVPDCLPACFLLYTVGNGGGQARRNIDGGVPTSKNGSKMAMTSNTRAGALN------SYLRDWEEPLISPFETYKSVVNQKIWHSNAMDHYIPPHPAEPATEINERVSPAAEVVPLIEAAA 370
The following BLAST results are available for this feature:
BLAST of NO09G00670.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27717.15.200e-9651.72hypothetical protein Naga_100034g23 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G00670NO09G00670Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G00670.1NO09G00670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G00670.1.cds1NO09G00670.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G00670.1 ID=NO09G00670.1|Name=NO09G00670.1|organism=Nannochloropsis oceanica|type=mRNA|length=1239bp
ATGGGAGACCTGGAAGCAACCATCAAGGGCATTGGTGTCTCAGGCACTTT
GGTGTATGTTGCTATGCTGCTCTACATCACGTGGCGGACATGCTTTCTCC
TCTTTCTCCAACCACCCCCAGCGACTGCCTCCAGACAACAGCAGCTAACC
TTGCCCGCCAAGAAAAGCTTCCATGTCGCCTTGTTCTTTTCAGCGTTGCT
CGACCTGAGTTATTACGCTAAACTATGTACAGGGGCGATTACTAGCACTT
CATTTTCGCTACACCTGATGGCGCTGTGGGCGGAGCTGACGGCTTTCAGT
TGCGTCGTCGTGGTCTGGTCCCGAGTGCTAAATGCGGCTAAAGAGAAAGA
CAGCGTCTTGACGTACGTGATCGCCCTCGATGGATTTGTCCTCGTGTGGA
CACTGGTGGTGATTTGCCTTGTGATTGTCGCCAAGGATAATGTCGATCAA
TGGGTCTCTCCAAGCAGTCAACCCTACATCTTTTTCTATCTAGTGCAAGC
TCTAGCCCTACTCTCCTGTTGCCTCGCCCTCCTATATCACGGCATCCGCC
TGCAGTACATCGTTAGGAATCACCCTCGTTGGGAGCCTCTGAGGAGGGAG
AGGCGGATGCGGATTGTGCTACGAATCAACGCTGTCCTCTCCGTGTGTAC
TTTCTGCTTCCTCTTGCGCGTTGTACTCTTAATGGCTCATTTTATCCAAG
CAGAAGCCCACCAACAAGCTCGTTTTCTGGACCCGGCCGCGTTAGTGAAT
TGGTATGTGTGGTGTAATTGGGTCCCAATGTGCATACCTGCTTCAATTCT
TCTCTTTATGATGAAAAACAATCCAGGGCGAGAACGAGGGAACATCGGGG
GTGCTACTGATGGTGGAGGAGGGTTGACTTTGGGATTGGCAGCCCAAGCA
GGAGGAGGGCAAGCAGGAGGAGGAGCTGAGACTGTAGGGATATTGCGTGA
GTGGGAAGAACGCTTGGTCTCCCTAAATTCCTCGGGAAACACATCGATAA
ATCGGAACTACTGGCGGCCGAACTCGGCGAGCTTGTACAGCCCCCCTTCT
CCGTCTGAGGTTGATGCTGTTGGTCCAATTTCGCCTGCGGCTGCTACTCC
GCTGACGCCTGCTACTGCGATCAGTTGTGGGCGGAGCAAGCCAGCGGCGG
TGTTGAATTTGGGGATGGAGCACAACGGGAGTAAGGAACAGGGTTCCGGA
TCAACGGAGGACGAGCCTTTGATTCTGGAGGCAGTATAA
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protein sequence of NO09G00670.1

>NO09G00670.1-protein ID=NO09G00670.1-protein|Name=NO09G00670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=413bp
MGDLEATIKGIGVSGTLVYVAMLLYITWRTCFLLFLQPPPATASRQQQLT
LPAKKSFHVALFFSALLDLSYYAKLCTGAITSTSFSLHLMALWAELTAFS
CVVVVWSRVLNAAKEKDSVLTYVIALDGFVLVWTLVVICLVIVAKDNVDQ
WVSPSSQPYIFFYLVQALALLSCCLALLYHGIRLQYIVRNHPRWEPLRRE
RRMRIVLRINAVLSVCTFCFLLRVVLLMAHFIQAEAHQQARFLDPAALVN
WYVWCNWVPMCIPASILLFMMKNNPGRERGNIGGATDGGGGLTLGLAAQA
GGGQAGGGAETVGILREWEERLVSLNSSGNTSINRNYWRPNSASLYSPPS
PSEVDAVGPISPAAATPLTPATAISCGRSKPAAVLNLGMEHNGSKEQGSG
STEDEPLILEAV*
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mRNA from alignment at chr9:245509..246747+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G00670.1 ID=NO09G00670.1|Name=NO09G00670.1|organism=Nannochloropsis oceanica|type=mRNA|length=1239bp|location=Sequence derived from alignment at chr9:245509..246747+ (Nannochloropsis oceanica)
ATGGGAGACCTGGAAGCAACCATCAAGGGCATTGGTGTCTCAGGCACTTT
GGTGTATGTTGCTATGCTGCTCTACATCACGTGGCGGACATGCTTTCTCC
TCTTTCTCCAACCACCCCCAGCGACTGCCTCCAGACAACAGCAGCTAACC
TTGCCCGCCAAGAAAAGCTTCCATGTCGCCTTGTTCTTTTCAGCGTTGCT
CGACCTGAGTTATTACGCTAAACTATGTACAGGGGCGATTACTAGCACTT
CATTTTCGCTACACCTGATGGCGCTGTGGGCGGAGCTGACGGCTTTCAGT
TGCGTCGTCGTGGTCTGGTCCCGAGTGCTAAATGCGGCTAAAGAGAAAGA
CAGCGTCTTGACGTACGTGATCGCCCTCGATGGATTTGTCCTCGTGTGGA
CACTGGTGGTGATTTGCCTTGTGATTGTCGCCAAGGATAATGTCGATCAA
TGGGTCTCTCCAAGCAGTCAACCCTACATCTTTTTCTATCTAGTGCAAGC
TCTAGCCCTACTCTCCTGTTGCCTCGCCCTCCTATATCACGGCATCCGCC
TGCAGTACATCGTTAGGAATCACCCTCGTTGGGAGCCTCTGAGGAGGGAG
AGGCGGATGCGGATTGTGCTACGAATCAACGCTGTCCTCTCCGTGTGTAC
TTTCTGCTTCCTCTTGCGCGTTGTACTCTTAATGGCTCATTTTATCCAAG
CAGAAGCCCACCAACAAGCTCGTTTTCTGGACCCGGCCGCGTTAGTGAAT
TGGTATGTGTGGTGTAATTGGGTCCCAATGTGCATACCTGCTTCAATTCT
TCTCTTTATGATGAAAAACAATCCAGGGCGAGAACGAGGGAACATCGGGG
GTGCTACTGATGGTGGAGGAGGGTTGACTTTGGGATTGGCAGCCCAAGCA
GGAGGAGGGCAAGCAGGAGGAGGAGCTGAGACTGTAGGGATATTGCGTGA
GTGGGAAGAACGCTTGGTCTCCCTAAATTCCTCGGGAAACACATCGATAA
ATCGGAACTACTGGCGGCCGAACTCGGCGAGCTTGTACAGCCCCCCTTCT
CCGTCTGAGGTTGATGCTGTTGGTCCAATTTCGCCTGCGGCTGCTACTCC
GCTGACGCCTGCTACTGCGATCAGTTGTGGGCGGAGCAAGCCAGCGGCGG
TGTTGAATTTGGGGATGGAGCACAACGGGAGTAAGGAACAGGGTTCCGGA
TCAACGGAGGACGAGCCTTTGATTCTGGAGGCAGTATAA
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Coding sequence (CDS) from alignment at chr9:245509..246747+

>NO09G00670.1 ID=NO09G00670.1|Name=NO09G00670.1|organism=Nannochloropsis oceanica|type=CDS|length=1239bp|location=Sequence derived from alignment at chr9:245509..246747+ (Nannochloropsis oceanica)
ATGGGAGACCTGGAAGCAACCATCAAGGGCATTGGTGTCTCAGGCACTTT
GGTGTATGTTGCTATGCTGCTCTACATCACGTGGCGGACATGCTTTCTCC
TCTTTCTCCAACCACCCCCAGCGACTGCCTCCAGACAACAGCAGCTAACC
TTGCCCGCCAAGAAAAGCTTCCATGTCGCCTTGTTCTTTTCAGCGTTGCT
CGACCTGAGTTATTACGCTAAACTATGTACAGGGGCGATTACTAGCACTT
CATTTTCGCTACACCTGATGGCGCTGTGGGCGGAGCTGACGGCTTTCAGT
TGCGTCGTCGTGGTCTGGTCCCGAGTGCTAAATGCGGCTAAAGAGAAAGA
CAGCGTCTTGACGTACGTGATCGCCCTCGATGGATTTGTCCTCGTGTGGA
CACTGGTGGTGATTTGCCTTGTGATTGTCGCCAAGGATAATGTCGATCAA
TGGGTCTCTCCAAGCAGTCAACCCTACATCTTTTTCTATCTAGTGCAAGC
TCTAGCCCTACTCTCCTGTTGCCTCGCCCTCCTATATCACGGCATCCGCC
TGCAGTACATCGTTAGGAATCACCCTCGTTGGGAGCCTCTGAGGAGGGAG
AGGCGGATGCGGATTGTGCTACGAATCAACGCTGTCCTCTCCGTGTGTAC
TTTCTGCTTCCTCTTGCGCGTTGTACTCTTAATGGCTCATTTTATCCAAG
CAGAAGCCCACCAACAAGCTCGTTTTCTGGACCCGGCCGCGTTAGTGAAT
TGGTATGTGTGGTGTAATTGGGTCCCAATGTGCATACCTGCTTCAATTCT
TCTCTTTATGATGAAAAACAATCCAGGGCGAGAACGAGGGAACATCGGGG
GTGCTACTGATGGTGGAGGAGGGTTGACTTTGGGATTGGCAGCCCAAGCA
GGAGGAGGGCAAGCAGGAGGAGGAGCTGAGACTGTAGGGATATTGCGTGA
GTGGGAAGAACGCTTGGTCTCCCTAAATTCCTCGGGAAACACATCGATAA
ATCGGAACTACTGGCGGCCGAACTCGGCGAGCTTGTACAGCCCCCCTTCT
CCGTCTGAGGTTGATGCTGTTGGTCCAATTTCGCCTGCGGCTGCTACTCC
GCTGACGCCTGCTACTGCGATCAGTTGTGGGCGGAGCAAGCCAGCGGCGG
TGTTGAATTTGGGGATGGAGCACAACGGGAGTAAGGAACAGGGTTCCGGA
TCAACGGAGGACGAGCCTTTGATTCTGGAGGCAGTATAA
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Synonyms
Publications