NO09G00590.4, NO09G00590.4 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO09G00590.4
Unique Name	NO09G00590.4
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2705
Alignment location	chr9:228605..231443 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr9	genome	chr9:228605..231443 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO09G00590.4 vs.
Match: EWM27735.1 (Protein of unknown function DUF3228 [Nannochloropsis gaditana])

HSP 1 Score: 283.1 bits (723), Expect = 6.800e-73
Identity = 137/196 (69.90%), Postives = 159/196 (81.12%), Query Frame = 0

Query:    7 YNLTVDDFCLRQFSPEYGGSKITMPPAEFEARVNAYYHANPHLADGYAPFCKHIFMPNFAGLTAGTAPITPENEHLLRSVYEARTEQELPVMVRFFPKDLVPPRRATHLDIILYSREQIRKENADMGNPDMAASHETAPWGIISVKAQDADHELPMQPITMLRNALGREYGGSGVELVREKYLESVDFWSQNAIIR 203
            +++ VDDFCLRQFS E   SKI +PP+EFE +VNAYY ANP L DGYAPFCKHIFMPNFAGL +GT+PIT EN HLLRSVYEAR E+ELPV++R+FPK+ V  + A  LDIILYSREQI+KEN DM N     +H  +PWGI+SVK QD D+ELPMQPITMLRNALGR YGGSGV L + +YL SVDFWS +AIIR
Sbjct:   51 HDIVVDDFCLRQFSQEENYSKIRLPPSEFEEQVNAYYQANPTLVDGYAPFCKHIFMPNFAGLRSGTSPITSENVHLLRSVYEARKEKELPVLIRYFPKEEVALKPAAFLDIILYSREQIQKENEDMANLVKEQNH--SPWGIVSVKPQDVDYELPMQPITMLRNALGRGYGGSGVALDQTQYLASVDFWSCHAIIR 244

The following BLAST results are available for this feature:

BLAST of NO09G00590.4 vs.

BLAST of NO09G00590.4 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM27735.1	6.800e-73	69.90	Protein of unknown function DUF3228 [Nannochlorops...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO09G00590	NO09G00590	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO09G00590.4	NO09G00590.4-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO09G00590.4.cds1	NO09G00590.4.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO09G00590.4.cds2	NO09G00590.4.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr9:228605..231443-
coding sequence from alignment at chr9:228605..231443-

mRNA sequence

>NO09G00590.4 ID=NO09G00590.4|Name=NO09G00590.4|organism=Nannochloropsis oceanica|type=mRNA|length=2705bp
TCCCAGTCACTGTTCATTTCACCCATCTTTACTTTGGCTTTGATTCTTCT
TGAGCCAACACATCTCAATAACCGGGGAAGGAAGGACGGAGCGGCCCCCT
TCTTTTATTACACTTGATTTAGAATGCACCAAAATTGCCGTTCTTCTCCT
TGCTGGAAGGAGTGAAAAGAGGAGGGGGCACGTCGTAAATCAAATGCACT
TGTTCTCGCCCCAGTTTTCCTCTCCTGCCGTCGCAATCACAACCCATCCG
TCTTCAGTTTAGTTCATTTACCGATCCTTAGCCAGGATGGTCTCACTCAC
CCACCGAAACGAACCATCCAGTAGCCGGTGCGTGAGCACGTCCAAAGGTC
CACAAATTATAGGGATGATGAGCAGGCCGGTAGCCGTTGGCAGATATTGC
ACCAGCTCGGGTGGGAGGCTGGCAAACTGATCCTGTTGGAGCTCTGAGAG
AGCCGTCCCTAGAAAAACCACCCATCTATTAATGGTGAAAGACGGGAAAA
TAACCGAAGCCATAATCTGAAAAAGCAAAGAGTCAACACTTGCCAGCATA
GACGGCTTTTTCCATTCCCCCCCCGACGGTAAATCCACCACCTTCGCGCC
CTGTGAGTAGGAATCAGCAGCAATATAGGCGAAGGCTACCAAGTAGGAGA
ATGTCACAAGGGGAGCAGGGACCAATGGTCGGAACGCCTCCCCGACTTCG
TTAGCGTATCCAAAATACCGCACCGCTGTGTCCCGGTACAGATCAACGGC
TTTCTCCAGCCCCTCCTCCTTCAACGCCCAAGGCGCAGCCGGCTCGATGC
CTTCCTTCTCCTCCTTGACCTGCAACACTTTTCCGGTACCAACCATGACC
GCGCAGCCCGCTAGCTGTATCATTAACTCAGGGCTGACCTCGGTCAAGGC
TTCATGCATGTTTCGCACCGACAACGACCGCCGCCGCTGAAAGAGGCTGC
TGCCGCTGGCCAAAAAAGGAGACGCCGTTTCTCGGCATGGTGGTCGCTGC
CCCAACCGTGACAAGCCCCAGAGAGCTGAGTGTCTGCCCCCCGAGGTTGC
ACCAAGAAATGCCGTGACAGTCGCCTGGACCATTGGTAGGGCCTTCATCG
CGTCTGCTGTGAGCGGCCGTGGGCTTCAAACGATCTCGACTGGAAGGAGG
ACCTAGGCCGGGGAATACAGGCAGCAGGCGGGAAGTCGTGCAAACCGCAG
GCCGCAAGGACAAACACCTGTGAACCGTTGTAAGGGGACTGGTGCGAGTG
TGAGGATTGGCTGGGAAGGTGCATGGCACGCGCTGAGGCTGAGAGAGGGC
GGTCTTGGGGAACCGAAGATGGCGCGTCATTCCTCATCGCCGACAGCGAG
TGGCAACACTGTCGTTTCAGATATGACAACACAACATGCACACACTTCAC
GGGAAGACACAGCATCACCATCAACACGCAGTGCATGAAAGCCTTTGCCT
TGTCGAGGAGCCTAGCAATATTTGGTACGTTCTTTAATGGAAAGAGGAAG
GAGGGTGGGCAACTTTAGGGGCCTAGGTGCATGATGGTTGGAGAGGGGCG
TTGACGTGTCGACATGGACTAAACGTATGTCAATAATGCTAGTAGAGCTG
GACAAAAGAACGCGGTTGTGAAAGGCGATAGGGTTTCGTTGACGATTCAA
CCCACCTCGTGGCCTATCCCTCTTTGCAGAGAAGCCAAATAAATACAGGG
TTCGTGCTCATCGAGAACGCCCTCCCGTATGTCTTCCTTTGCTTGGCATC
CTTTCCCCTGTCAATTGCATGCGGGTATATGATTCTGACGCGCATCCTTT
CAAAATCCTCTTCATAGTGGTGGGTGGGTCACCCTCGTTCGTCACATCAT
CGGCTTTTGTGGGATCGGGCGCGCTTATCAGCTCCCTCAAGAAGGCTCGT
CCATCTCCCCTCTGTCGACGGGTACGTCTCTGGGATAGCTCATCAAATTG
ACATTTCCCTCGTCCTAATCGTAAGCTACCATCCAATCACGCAGTTCAGC
ATGGCCGCGGAAAGCGTGTACAACCTTACCGTCGACGATTTTTGTCTCAG
ACAGTTCTCGCCTGAATACGGTGGCTCAAAAATCACCATGCCCCCTGCCG
AGTTCGAAGCGAGAGTAAATGCGTATTATCATGCTAATCCACACCTAGCG
GATGGCTACGCCCCATTTTGTAAGCATATTTTTATGCCCAATTTTGCGGG
GTTGACGGCTGGTACGGCGCCCATCACGCCCGAAAATGAGCACTTGCTGC
GTTCTGTGTATGAGGCAAGGACAGAGCAAGAGCTGCCAGTGATGGTTCGA
TTCTTCCCGAAAGACCTCGTGCCCCCCAGACGGGCGACGCACCTCGACAT
CATCCTCTACAGCCGAGAGCAGATCCGAAAAGAGAACGCTGACATGGGTA
ACCCCGACATGGCCGCCTCTCACGAAACCGCGCCGTGGGGCATCATTTCT
GTGAAGGCTCAAGACGCGGACCATGAGTTGCCCATGCAGCCGATAACGAT
GCTGAGGAATGCCCTGGGCAGGGAGTATGGCGGGTCGGGTGTGGAATTGG
TCAGGGAGAAGTATTTGGAGAGTGTGGACTTTTGGAGCCAAAATGCGATT
ATTCGATGAGAGGCGTGTGTTTCGGAAGAGCAAAGTACACACCCAAGGAA
GGAAGCAAGGTACCGTGTCGCTGCAGGCAGTCACATGGTGTCACACAGAG
AGAGA

protein sequence of NO09G00590.4

>NO09G00590.4-protein ID=NO09G00590.4-protein|Name=NO09G00590.4|organism=Nannochloropsis oceanica|type=polypeptide|length=203bp
MAAESVYNLTVDDFCLRQFSPEYGGSKITMPPAEFEARVNAYYHANPHLA
DGYAPFCKHIFMPNFAGLTAGTAPITPENEHLLRSVYEARTEQELPVMVR
FFPKDLVPPRRATHLDIILYSREQIRKENADMGNPDMAASHETAPWGIIS
VKAQDADHELPMQPITMLRNALGREYGGSGVELVREKYLESVDFWSQNAI
IR*

mRNA from alignment at chr9:228605..231443-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO09G00590.4 ID=NO09G00590.4|Name=NO09G00590.4|organism=Nannochloropsis oceanica|type=mRNA|length=2839bp|location=Sequence derived from alignment at chr9:228605..231443- (Nannochloropsis oceanica)
TCCCAGTCACTGTTCATTTCACCCATCTTTACTTTGGCTTTGATTCTTCT
TGAGCCAACACATCTCAATAACCGGGGAAGGAAGGACGGAGCGGCCCCCT
TCTTTTATTACACTTGATTTAGAATGCACCAAAATTGCCGTTCTTCTCCT
TGCTGGAAGGAGTGAAAAGAGGAGGGGGCACGTCGTAAATCAAATGCACT
TGTTCTCGCCCCAGTTTTCCTCTCCTGCCGTCGCAATCACAACCCATCCG
TCTTCAGTTTAGTTCATTTACCGATCCTTAGCCAGGATGGTCTCACTCAC
CCACCGAAACGAACCATCCAGTAGCCGGTGCGTGAGCACGTCCAAAGGTC
CACAAATTATAGGGATGATGAGCAGGCCGGTAGCCGTTGGCAGATATTGC
ACCAGCTCGGGTGGGAGGCTGGCAAACTGATCCTGTTGGAGCTCTGAGAG
AGCCGTCCCTAGAAAAACCACCCATCTATTAATGGTGAAAGACGGGAAAA
TAACCGAAGCCATAATCTGAAAAAGCAAAGAGTCAACACTTGCCAGCATA
GACGGCTTTTTCCATTCCCCCCCCGACGGTAAATCCACCACCTTCGCGCC
CTGTGAGTAGGAATCAGCAGCAATATAGGCGAAGGCTACCAAGTAGGAGA
ATGTCACAAGGGGAGCAGGGACCAATGGTCGGAACGCCTCCCCGACTTCG
TTAGCGTATCCAAAATACCGCACCGCTGTGTCCCGGTACAGATCAACGGC
TTTCTCCAGCCCCTCCTCCTTCAACGCCCAAGGCGCAGCCGGCTCGATGC
CTTCCTTCTCCTCCTTGACCTGCAACACTTTTCCGGTACCAACCATGACC
GCGCAGCCCGCTAGCTGTATCATTAACTCAGGGCTGACCTCGGTCAAGGC
TTCATGCATGTTTCGCACCGACAACGACCGCCGCCGCTGAAAGAGGCTGC
TGCCGCTGGCCAAAAAAGGAGACGCCGTTTCTCGGCATGGTGGTCGCTGC
CCCAACCGTGACAAGCCCCAGAGAGCTGAGTGTCTGCCCCCCGAGGTTGC
ACCAAGAAATGCCGTGACAGTCGCCTGGACCATTGGTAGGGCCTTCATCG
CGTCTGCTGTGAGCGGCCGTGGGCTTCAAACGATCTCGACTGGAAGGAGG
ACCTAGGCCGGGGAATACAGGCAGCAGGCGGGAAGTCGTGCAAACCGCAG
GCCGCAAGGACAAACACCTGTGAACCGTTGTAAGGGGACTGGTGCGAGTG
TGAGGATTGGCTGGGAAGGTGCATGGCACGCGCTGAGGCTGAGAGAGGGC
GGTCTTGGGGAACCGAAGATGGCGCGTCATTCCTCATCGCCGACAGCGAG
TGGCAACACTGTCGTTTCAGATATGACAACACAACATGCACACACTTCAC
GGGAAGACACAGCATCACCATCAACACGCAGTGCATGAAAGCCTTTGCCT
TGTCGAGGAGCCTAGCAATATTTGGTACGTTCTTTAATGGAAAGAGGAAG
GAGGGTGGGCAACTTTAGGGGCCTAGGTGCATGATGGTTGGAGAGGGGCG
TTGACGTGTCGACATGGACTAAACGTATGTCAATAATGCTAGTAGAGCTG
GACAAAAGAACGCGGTTGTGAAAGGCGATAGGGTTTCGTTGACGATTCAA
CCCACCTCGTGGCCTATCCCTCTTTGCAGAGAAGCCAAATAAATACAGGG
TTCGTGCTCATCGAGAACGCCCTCCCGTATGTCTTCCTTTGCTTGGCATC
CTTTCCCCTGTCAATTGCATGCGGGTATATGATTCTGACGCGCATCCTTT
CAAAATCCTCTTCATAGTGGTGGGTGGGTCACCCTCGTTCGTCACATCAT
CGGCTTTTGTGGGATCGGGCGCGCTTATCAGCTCCCTCAAGAAGGCTCGT
CCATCTCCCCTCTGTCGACGGGTACGTCTCTGGGATAGCTCATCAAATTG
ACATTTCCCTCGTCCTAATCGTAAGCTACCATCCAATCACGCAGTTCAGC
ATGGCCGCGGAAAGCGTGTACAACCTTACCGTCGACGATTTTTGTCTCAG
ACAGTTCTCGCCTGAATACGGTGGCTCAAAAATCACCATGCCCCCTGCCG
AGTTCGAAGCGAGAGTAAATGCGTATTATCATGCTAATCCACACCTAGCG
GATGGCTACGCCCCATTTTGTAAGCATATTTTTATGCCCAATTTTGCGGG
GTTGACGGCTGGTACGGCGCCCATCACGCCCGAAAATGAGCACTTGCTGC
GTTCTGTGTATGAGGCAAGGACAGAGCAAGAGCTGCCAGTGATGGTACGT
GCACTAAAAACGTATTTATGCGTTTGCTTGTGGTTCAGCAACCCTTCGTC
ATGGGTCCTCTTTCACTTGTCAGATGAACATGAATGTTGACTCTGTCATG
CCCCTCCCACCCCCCCTTCCTCCACCAGGTTCGATTCTTCCCGAAAGACC
TCGTGCCCCCCAGACGGGCGACGCACCTCGACATCATCCTCTACAGCCGA
GAGCAGATCCGAAAAGAGAACGCTGACATGGGTAACCCCGACATGGCCGC
CTCTCACGAAACCGCGCCGTGGGGCATCATTTCTGTGAAGGCTCAAGACG
CGGACCATGAGTTGCCCATGCAGCCGATAACGATGCTGAGGAATGCCCTG
GGCAGGGAGTATGGCGGGTCGGGTGTGGAATTGGTCAGGGAGAAGTATTT
GGAGAGTGTGGACTTTTGGAGCCAAAATGCGATTATTCGATGAGAGGCGT
GTGTTTCGGAAGAGCAAAGTACACACCCAAGGAAGGAAGCAAGGTACCGT
GTCGCTGCAGGCAGTCACATGGTGTCACACAGAGAGAGA

Coding sequence (CDS) from alignment at chr9:228605..231443-

>NO09G00590.4 ID=NO09G00590.4|Name=NO09G00590.4|organism=Nannochloropsis oceanica|type=CDS|length=609bp|location=Sequence derived from alignment at chr9:228605..231443- (Nannochloropsis oceanica)
ATGGCCGCGGAAAGCGTGTACAACCTTACCGTCGACGATTTTTGTCTCAG
ACAGTTCTCGCCTGAATACGGTGGCTCAAAAATCACCATGCCCCCTGCCG
AGTTCGAAGCGAGAGTAAATGCGTATTATCATGCTAATCCACACCTAGCG
GATGGCTACGCCCCATTTTGTAAGCATATTTTTATGCCCAATTTTGCGGG
GTTGACGGCTGGTACGGCGCCCATCACGCCCGAAAATGAGCACTTGCTGC
GTTCTGTGTATGAGGCAAGGACAGAGCAAGAGCTGCCAGTGATGGTTCGA
TTCTTCCCGAAAGACCTCGTGCCCCCCAGACGGGCGACGCACCTCGACAT
CATCCTCTACAGCCGAGAGCAGATCCGAAAAGAGAACGCTGACATGGGTA
ACCCCGACATGGCCGCCTCTCACGAAACCGCGCCGTGGGGCATCATTTCT
GTGAAGGCTCAAGACGCGGACCATGAGTTGCCCATGCAGCCGATAACGAT
GCTGAGGAATGCCCTGGGCAGGGAGTATGGCGGGTCGGGTGTGGAATTGG
TCAGGGAGAAGTATTTGGAGAGTGTGGACTTTTGGAGCCAAAATGCGATT
ATTCGATGA

Synonyms

Publications