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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr9 | genome | chr9:228605..231443 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G00590.1 vs.
Match: EWM27735.1 (Protein of unknown function DUF3228 [Nannochloropsis gaditana]) HSP 1 Score: 282.0 bits (720), Expect = 2.300e-72 Identity = 149/256 (58.20%), Postives = 182/256 (71.09%), Query Frame = 0
Query: 55 MKAFALSRSLAIFVVGGSPSFVTSSAFVGSGALISSLKKARPSPLCRRF----SMAAESVYNLTVDDFCLRQFSPEYGGSKITMPPAEFEARVNAYYHANPHLADGYAPFCKHIFMPNFAGLTAGTAPITPENEHLLRSVYEARTEQELPVMVRFFPKDLVPPRRATHLDIILYSREQIRKENADMGNPDMAASHETAPWGIISVKAQDADHELPMQPITMLRNALGREYGGSGVELVREKYLESVDFWSQNAIIR 307
MK + ++++ G PS + IS + + RP R + +M A+ +++ VDDFCLRQFS E SKI +PP+EFE +VNAYY ANP L DGYAPFCKHIFMPNFAGL +GT+PIT EN HLLRSVYEAR E+ELPV++R+FPK+ V + A LDIILYSREQI+KEN DM N +H +PWGI+SVK QD D+ELPMQPITMLRNALGR YGGSGV L + +YL SVDFWS +AIIR
Sbjct: 1 MKICSSVLAISVIYAGAFPS--------AAPVFISWIVQPRPLASKRHYHCRGTMTAK--HDIVVDDFCLRQFSQEENYSKIRLPPSEFEEQVNAYYQANPTLVDGYAPFCKHIFMPNFAGLRSGTSPITSENVHLLRSVYEARKEKELPVLIRYFPKEEVALKPAAFLDIILYSREQIQKENEDMANLVKEQNH--SPWGIVSVKPQDVDYELPMQPITMLRNALGRGYGGSGVALDQTQYLASVDFWSCHAIIR 244
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G00590.1 ID=NO09G00590.1|Name=NO09G00590.1|organism=Nannochloropsis oceanica|type=mRNA|length=2289bp
TCCCAGTCACTGTTCATTTCACCCATCTTTACTTTGGCTTTGATTCTTCT
TGAGCCAACACATCTCAATAACCGGGGAAGGAAGGACGGAGCGGCCCCCT
TCTTTTATTACACTTGATTTAGAATGCACCAAAATTGCCGTTCTTCTCCT
TGCTGGAAGGAGTGAAAAGAGGAGGGGGCACGTCGTAAATCAAATGCACT
TGTTCTCGCCCCAGTTTTCCTCTCCTGCCGTCGCAATCACAACCCATCCG
TCTTCAGTTTAGTTCATTTACCGATCCTTAGCCAGGATGGTCTCACTCAC
CCACCGAAACGAACCATCCAGTAGCCGGTGCGTGAGCACGTCCAAAGGTC
CACAAATTATAGGGATGATGAGCAGGCCGGTAGCCGTTGGCAGATATTGC
ACCAGCTCGGGTGGGAGGCTGGCAAACTGATCCTGTTGGAGCTCTGAGAG
AGCCGTCCCTAGAAAAACCACCCATCTATTAATGGTGAAAGACGGGAAAA
TAACCGAAGCCATAATCTGAAAAAGCAAAGAGTCAACACTTGCCAGCATA
GACGGCTTTTTCCATTCCCCCCCCGACGGTAAATCCACCACCTTCGCGCC
CTGTGAGTAGGAATCAGCAGCAATATAGGCGAAGGCTACCAAGTAGGAGA
ATGTCACAAGGGGAGCAGGGACCAATGGTCGGAACGCCTCCCCGACTTCG
TTAGCGTATCCAAAATACCGCACCGCTGTGTCCCGGTACAGATCAACGGC
TTTCTCCAGCCCCTCCTCCTTCAACGCCCAAGGCGCAGCCGGCTCGATGC
CTTCCTTCTCCTCCTTGACCTGCAACACTTTTCCGGTACCAACCATGACC
GCGCAGCCCGCTAGCTGTATCATTAACTCAGGGCTGACCTCGGTCAAGGC
TTCATGCATGTTTCGCACCGACAACGACCGCCGCCGCTGAAAGAGGCTGC
TGCCGCTGGCCAAAAAAGGAGACGCCGTTTCTCGGCATGGTGGTCGCTGC
CCCAACCGTGACAAGCCCCAGAGAGCTGAGTGTCTGCCCCCCGAGGTTGC
ACCAAGAAATGCCGTGACAGTCGCCTGGACCATTGGTAGGGCCTTCATCG
CGTCTGCTGTGAGCGGCCGTGGGCTTCAAACGATCTCGACTGGAAGGAGG
ACCTAGGCCGGGGAATACAGGCAGCAGGCGGGAAGTCGTGCAAACCGCAG
GCCGCAAGGACAAACACCTGTGAACCGTTGTAAGGGGACTGGTGCGAGTG
TGAGGATTGGCTGGGAAGGTGCATGGCACGCGCTGAGGCTGAGAGAGGGC
GGTCTTGGGGAACCGAAGATGGCGCGTCATTCCTCATCGCCGACAGCGAG
TGGCAACACTGTCGTTTCAGATATGACAACACAACATGCACACACTTCAC
GGGAAGACACAGCATCACCATCAACACGCAGTGCATGAAAGCCTTTGCCT
TGTCGAGGAGCCTAGCAATATTTGTGGTGGGTGGGTCACCCTCGTTCGTC
ACATCATCGGCTTTTGTGGGATCGGGCGCGCTTATCAGCTCCCTCAAGAA
GGCTCGTCCATCTCCCCTCTGTCGACGGTTCAGCATGGCCGCGGAAAGCG
TGTACAACCTTACCGTCGACGATTTTTGTCTCAGACAGTTCTCGCCTGAA
TACGGTGGCTCAAAAATCACCATGCCCCCTGCCGAGTTCGAAGCGAGAGT
AAATGCGTATTATCATGCTAATCCACACCTAGCGGATGGCTACGCCCCAT
TTTGTAAGCATATTTTTATGCCCAATTTTGCGGGGTTGACGGCTGGTACG
GCGCCCATCACGCCCGAAAATGAGCACTTGCTGCGTTCTGTGTATGAGGC
AAGGACAGAGCAAGAGCTGCCAGTGATGGTTCGATTCTTCCCGAAAGACC
TCGTGCCCCCCAGACGGGCGACGCACCTCGACATCATCCTCTACAGCCGA
GAGCAGATCCGAAAAGAGAACGCTGACATGGGTAACCCCGACATGGCCGC
CTCTCACGAAACCGCGCCGTGGGGCATCATTTCTGTGAAGGCTCAAGACG
CGGACCATGAGTTGCCCATGCAGCCGATAACGATGCTGAGGAATGCCCTG
GGCAGGGAGTATGGCGGGTCGGGTGTGGAATTGGTCAGGGAGAAGTATTT
GGAGAGTGTGGACTTTTGGAGCCAAAATGCGATTATTCGATGAGAGGCGT
GTGTTTCGGAAGAGCAAAGTACACACCCAAGGAAGGAAGCAAGGTACCGT
GTCGCTGCAGGCAGTCACATGGTGTCACACAGAGAGAGA back to topprotein sequence of NO09G00590.1 >NO09G00590.1-protein ID=NO09G00590.1-protein|Name=NO09G00590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=307bp
MARAEAERGRSWGTEDGASFLIADSEWQHCRFRYDNTTCTHFTGRHSITI
NTQCMKAFALSRSLAIFVVGGSPSFVTSSAFVGSGALISSLKKARPSPLC
RRFSMAAESVYNLTVDDFCLRQFSPEYGGSKITMPPAEFEARVNAYYHAN
PHLADGYAPFCKHIFMPNFAGLTAGTAPITPENEHLLRSVYEARTEQELP
VMVRFFPKDLVPPRRATHLDIILYSREQIRKENADMGNPDMAASHETAPW
GIISVKAQDADHELPMQPITMLRNALGREYGGSGVELVREKYLESVDFWS
QNAIIR* back to topmRNA from alignment at chr9:228605..231443- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G00590.1 ID=NO09G00590.1|Name=NO09G00590.1|organism=Nannochloropsis oceanica|type=mRNA|length=2839bp|location=Sequence derived from alignment at chr9:228605..231443- (Nannochloropsis oceanica)
TCCCAGTCACTGTTCATTTCACCCATCTTTACTTTGGCTTTGATTCTTCT
TGAGCCAACACATCTCAATAACCGGGGAAGGAAGGACGGAGCGGCCCCCT
TCTTTTATTACACTTGATTTAGAATGCACCAAAATTGCCGTTCTTCTCCT
TGCTGGAAGGAGTGAAAAGAGGAGGGGGCACGTCGTAAATCAAATGCACT
TGTTCTCGCCCCAGTTTTCCTCTCCTGCCGTCGCAATCACAACCCATCCG
TCTTCAGTTTAGTTCATTTACCGATCCTTAGCCAGGATGGTCTCACTCAC
CCACCGAAACGAACCATCCAGTAGCCGGTGCGTGAGCACGTCCAAAGGTC
CACAAATTATAGGGATGATGAGCAGGCCGGTAGCCGTTGGCAGATATTGC
ACCAGCTCGGGTGGGAGGCTGGCAAACTGATCCTGTTGGAGCTCTGAGAG
AGCCGTCCCTAGAAAAACCACCCATCTATTAATGGTGAAAGACGGGAAAA
TAACCGAAGCCATAATCTGAAAAAGCAAAGAGTCAACACTTGCCAGCATA
GACGGCTTTTTCCATTCCCCCCCCGACGGTAAATCCACCACCTTCGCGCC
CTGTGAGTAGGAATCAGCAGCAATATAGGCGAAGGCTACCAAGTAGGAGA
ATGTCACAAGGGGAGCAGGGACCAATGGTCGGAACGCCTCCCCGACTTCG
TTAGCGTATCCAAAATACCGCACCGCTGTGTCCCGGTACAGATCAACGGC
TTTCTCCAGCCCCTCCTCCTTCAACGCCCAAGGCGCAGCCGGCTCGATGC
CTTCCTTCTCCTCCTTGACCTGCAACACTTTTCCGGTACCAACCATGACC
GCGCAGCCCGCTAGCTGTATCATTAACTCAGGGCTGACCTCGGTCAAGGC
TTCATGCATGTTTCGCACCGACAACGACCGCCGCCGCTGAAAGAGGCTGC
TGCCGCTGGCCAAAAAAGGAGACGCCGTTTCTCGGCATGGTGGTCGCTGC
CCCAACCGTGACAAGCCCCAGAGAGCTGAGTGTCTGCCCCCCGAGGTTGC
ACCAAGAAATGCCGTGACAGTCGCCTGGACCATTGGTAGGGCCTTCATCG
CGTCTGCTGTGAGCGGCCGTGGGCTTCAAACGATCTCGACTGGAAGGAGG
ACCTAGGCCGGGGAATACAGGCAGCAGGCGGGAAGTCGTGCAAACCGCAG
GCCGCAAGGACAAACACCTGTGAACCGTTGTAAGGGGACTGGTGCGAGTG
TGAGGATTGGCTGGGAAGGTGCATGGCACGCGCTGAGGCTGAGAGAGGGC
GGTCTTGGGGAACCGAAGATGGCGCGTCATTCCTCATCGCCGACAGCGAG
TGGCAACACTGTCGTTTCAGATATGACAACACAACATGCACACACTTCAC
GGGAAGACACAGCATCACCATCAACACGCAGTGCATGAAAGCCTTTGCCT
TGTCGAGGAGCCTAGCAATATTTGGTACGTTCTTTAATGGAAAGAGGAAG
GAGGGTGGGCAACTTTAGGGGCCTAGGTGCATGATGGTTGGAGAGGGGCG
TTGACGTGTCGACATGGACTAAACGTATGTCAATAATGCTAGTAGAGCTG
GACAAAAGAACGCGGTTGTGAAAGGCGATAGGGTTTCGTTGACGATTCAA
CCCACCTCGTGGCCTATCCCTCTTTGCAGAGAAGCCAAATAAATACAGGG
TTCGTGCTCATCGAGAACGCCCTCCCGTATGTCTTCCTTTGCTTGGCATC
CTTTCCCCTGTCAATTGCATGCGGGTATATGATTCTGACGCGCATCCTTT
CAAAATCCTCTTCATAGTGGTGGGTGGGTCACCCTCGTTCGTCACATCAT
CGGCTTTTGTGGGATCGGGCGCGCTTATCAGCTCCCTCAAGAAGGCTCGT
CCATCTCCCCTCTGTCGACGGGTACGTCTCTGGGATAGCTCATCAAATTG
ACATTTCCCTCGTCCTAATCGTAAGCTACCATCCAATCACGCAGTTCAGC
ATGGCCGCGGAAAGCGTGTACAACCTTACCGTCGACGATTTTTGTCTCAG
ACAGTTCTCGCCTGAATACGGTGGCTCAAAAATCACCATGCCCCCTGCCG
AGTTCGAAGCGAGAGTAAATGCGTATTATCATGCTAATCCACACCTAGCG
GATGGCTACGCCCCATTTTGTAAGCATATTTTTATGCCCAATTTTGCGGG
GTTGACGGCTGGTACGGCGCCCATCACGCCCGAAAATGAGCACTTGCTGC
GTTCTGTGTATGAGGCAAGGACAGAGCAAGAGCTGCCAGTGATGGTACGT
GCACTAAAAACGTATTTATGCGTTTGCTTGTGGTTCAGCAACCCTTCGTC
ATGGGTCCTCTTTCACTTGTCAGATGAACATGAATGTTGACTCTGTCATG
CCCCTCCCACCCCCCCTTCCTCCACCAGGTTCGATTCTTCCCGAAAGACC
TCGTGCCCCCCAGACGGGCGACGCACCTCGACATCATCCTCTACAGCCGA
GAGCAGATCCGAAAAGAGAACGCTGACATGGGTAACCCCGACATGGCCGC
CTCTCACGAAACCGCGCCGTGGGGCATCATTTCTGTGAAGGCTCAAGACG
CGGACCATGAGTTGCCCATGCAGCCGATAACGATGCTGAGGAATGCCCTG
GGCAGGGAGTATGGCGGGTCGGGTGTGGAATTGGTCAGGGAGAAGTATTT
GGAGAGTGTGGACTTTTGGAGCCAAAATGCGATTATTCGATGAGAGGCGT
GTGTTTCGGAAGAGCAAAGTACACACCCAAGGAAGGAAGCAAGGTACCGT
GTCGCTGCAGGCAGTCACATGGTGTCACACAGAGAGAGA back to topCoding sequence (CDS) from alignment at chr9:228605..231443- >NO09G00590.1 ID=NO09G00590.1|Name=NO09G00590.1|organism=Nannochloropsis oceanica|type=CDS|length=921bp|location=Sequence derived from alignment at chr9:228605..231443- (Nannochloropsis oceanica)
ATGGCACGCGCTGAGGCTGAGAGAGGGCGGTCTTGGGGAACCGAAGATGG
CGCGTCATTCCTCATCGCCGACAGCGAGTGGCAACACTGTCGTTTCAGAT
ATGACAACACAACATGCACACACTTCACGGGAAGACACAGCATCACCATC
AACACGCAGTGCATGAAAGCCTTTGCCTTGTCGAGGAGCCTAGCAATATT
TGTGGTGGGTGGGTCACCCTCGTTCGTCACATCATCGGCTTTTGTGGGAT
CGGGCGCGCTTATCAGCTCCCTCAAGAAGGCTCGTCCATCTCCCCTCTGT
CGACGGTTCAGCATGGCCGCGGAAAGCGTGTACAACCTTACCGTCGACGA
TTTTTGTCTCAGACAGTTCTCGCCTGAATACGGTGGCTCAAAAATCACCA
TGCCCCCTGCCGAGTTCGAAGCGAGAGTAAATGCGTATTATCATGCTAAT
CCACACCTAGCGGATGGCTACGCCCCATTTTGTAAGCATATTTTTATGCC
CAATTTTGCGGGGTTGACGGCTGGTACGGCGCCCATCACGCCCGAAAATG
AGCACTTGCTGCGTTCTGTGTATGAGGCAAGGACAGAGCAAGAGCTGCCA
GTGATGGTTCGATTCTTCCCGAAAGACCTCGTGCCCCCCAGACGGGCGAC
GCACCTCGACATCATCCTCTACAGCCGAGAGCAGATCCGAAAAGAGAACG
CTGACATGGGTAACCCCGACATGGCCGCCTCTCACGAAACCGCGCCGTGG
GGCATCATTTCTGTGAAGGCTCAAGACGCGGACCATGAGTTGCCCATGCA
GCCGATAACGATGCTGAGGAATGCCCTGGGCAGGGAGTATGGCGGGTCGG
GTGTGGAATTGGTCAGGGAGAAGTATTTGGAGAGTGTGGACTTTTGGAGC
CAAAATGCGATTATTCGATGA back to top
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