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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr9 | genome | chr9:215077..217906 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G00540.3 vs.
Match: EWM27716.1 (SMAD/FHA domain protein [Nannochloropsis gaditana]) HSP 1 Score: 470.7 bits (1210), Expect = 4.600e-129 Identity = 275/416 (66.11%), Postives = 309/416 (74.28%), Query Frame = 0
Query: 1 MVLRCLGPAESDWMNRSQVVTKEGISGGRRRNATGGKDSMVFQDTTVSRRHFEAGYGPIDETGHAGFYIQDLGSAGGTYLRLRPREAMGLRDGAMILVGKHQFIVLAPSRFLELEQQQQPQPPTASTAPFAVPPMSSSSTPPPPPSRNMDLVDQS--DHALLGVSPTSGGGGATPAVEVTDESSGASTGAGGGVSE-RGAYGGK-TMGASIQGYLQRPKAPLVSADEGPPRPLLMLKCFAPEGSPMQHRVFAVGTEGATVGRKQSNTVSLSQEKGGEVLGLDSAVSGEHCRLEYHPDKGAFVLLDGGLGGDKPSTNGTWARLSYMQMASPRQILEREDEILVGGILRFAVSFESFLMEGVVPPRGEEGQEGRGEESGGGGGEGGI---SDGETLTPRSKQEKE----VEEESMDVS 406
MVLRCLGPAESDW++RSQVVTKEGI GGRRR TGGKDSMVFQDTTVSRRHFEAG+GP+DET FYIQDLGSAGGTYLRLRPRE M LRDGAMILVGKHQFIV++PSR EL Q P T +A A +S+T P P S D + + + P S GA A+ D + S GGG S RG G +G IQ YLQ+P+APLVSA EG +PLLML+CFAPEGSPMQHRVFAVG EGA++GRKQSNTVSLSQEKGGEVLGLDSAVSGEHCR+EYH +KG FVL+DGGLGGDKPSTNGTW RLSY+ M S RQ +ER+DEILVGGILRF+VSFE+FLME VVPPR EEG + ++GG GEG + SDGE TPRSKQ+KE EE MD S
Sbjct: 108 MVLRCLGPAESDWIHRSQVVTKEGILGGRRRILTGGKDSMVFQDTTVSRRHFEAGWGPVDETSLPSFYIQDLGSAGGTYLRLRPREIMELRDGAMILVGKHQFIVISPSRLHEL-QLPAPACRTGQSA-VAFEAFHNSATIPTPLSPGAPGTDDNTENQGFPNMPPASAAAGAV-ALGTEDPNDSISGAGGGGESGLRGRQGQDFPLGRLIQRYLQQPEAPLVSAGEGSEQPLLMLQCFAPEGSPMQHRVFAVGVEGASIGRKQSNTVSLSQEKGGEVLGLDSAVSGEHCRIEYHHEKGGFVLVDGGLGGDKPSTNGTWTRLSYIHMTSARQKVERDDEILVGGILRFSVSFETFLMESVVPPR-EEG--AKACDTGGRDGEGAVGMMSDGEGSTPRSKQDKENGPIGREEPMDTS 517
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G00540.3 ID=NO09G00540.3|Name=NO09G00540.3|organism=Nannochloropsis oceanica|type=mRNA|length=2482bp
CCACAGGCCACATCGCGCATCTTCCTGCTATCTGAGGGCCGGAAACACGC
TGCTGGACGTGGACACTGCAGCAGAAAGGCGGCAGTACGCAGGCAAATGA
CGCCCAGACCTGTGATTGTGCGGGGGCGCATAAGAGATGAGTTTCAATGT
CCCATTACAGCACAAATTCTCAGAGACCCCGTCGTAGCGAAGGATGGACA
CACATATGAACGCTCCGCCATCAGCCTCTGGCTTGAAACCCACAAGACAT
CTCCCATGGTAAACACTTTCCTTACCATCCTCTCCTCCCCCTCTGCCTCG
CCTCTCTCCAGGAAGAGCATAAGAATATACCTCTCCTTTCTCTGCTCCCC
CCCTTACAGACCAAAGAGGAAATCAGCTCCGCAGATCTAGTCGCGAACCT
GAACCTCAAGCGACTCATCTACGATCTAGTCGCAGAGGGCGGACATGGGC
TGGCAGCCAAGCCCACCAATGCCGAAGAAGCATCCCAAGAGACGGCATTT
GGGTTCGACGACGTGATGGTCCTCCGTTGTTTAGGGCCGGCCGAATCCGA
TTGGATGAACCGCAGCCAAGTCGTGACGAAGGAGGGCATTTCTGGGGGAC
GCAGGAGGAATGCCACCGGAGGAAAGGACTCGATGGTCTTCCAAGACACC
ACGGTCTCTCGGCGTCACTTCGAGGCCGGTTACGGCCCCATCGACGAGAC
AGGCCACGCCGGTTTCTACATCCAGGACCTCGGTTCCGCCGGGGGCACCT
ACCTCCGCCTCCGCCCTCGGGAAGCAATGGGCCTGAGAGACGGCGCCATG
ATCCTCGTGGGAAAGCATCAATTTATTGTTCTTGCCCCCTCCCGTTTCCT
TGAACTCGAGCAGCAGCAACAGCCGCAACCACCAACAGCTTCTACCGCGC
CTTTTGCCGTCCCTCCTATGAGCAGCTCTTCCACTCCGCCACCACCTCCT
AGCCGGAACATGGATCTCGTCGACCAAAGTGACCATGCACTCCTTGGAGT
TTCTCCAACGTCTGGAGGAGGAGGAGCAACACCAGCAGTAGAAGTAACAG
ATGAATCGAGCGGTGCGAGTACCGGCGCAGGTGGAGGAGTGTCAGAAAGA
GGGGCGTATGGAGGCAAGACGATGGGAGCATCGATTCAAGGGTATTTACA
GAGGCCAAAGGCCCCATTGGTGAGCGCGGATGAAGGACCGCCGCGGCCGT
TGCTGATGCTCAAATGCTTCGCACCTGAGGGGTCGCCGATGCAGCACCGT
GTGTTTGCCGTGGGCACAGAGGGTGCGACGGTGGGACGGAAGCAGAGTAA
TACTGTGTCCTTATCGCAGGAGAAGGGGGGAGAGGTCCTGGGGCTTGACT
CGGCTGTGTCGGGCGAGCATTGTCGGTTGGAGTACCACCCTGACAAGGGG
GCCTTCGTCCTGCTGGATGGGGGACTGGGGGGGGACAAGCCGTCGACAAA
TGGAACATGGGCCCGGTTGAGCTACATGCAGATGGCCAGTCCAAGACAGA
TATTGGAGAGAGAGGACGAGATTCTCGTTGGGGGGATATTGAGGTTTGCG
GTGTCTTTCGAGAGTTTTTTGATGGAAGGCGTTGTTCCTCCGAGGGGCGA
GGAGGGGCAGGAGGGGAGAGGTGAGGAAAGCGGGGGAGGAGGGGGAGAAG
GCGGGATATCGGATGGGGAGACTTTGACGCCGAGAAGTAAGCAGGAGAAG
GAGGTGGAGGAGGAGTCGATGGACGTTTCATGATAATAGTTTTTGGGATG
TGAGGAGGAAGGGAGGGAGGAATGAGAAGGGGGGATGGAGAGGGGAAGGA
ATGGAGGGAGGAAGGGATTTGACCGATAGAAATATCAGCTGGTGGTTAAA
GGAGAGCCATCAAATTGTGTACACATTCATAAGACCCTTTCATTGTGAGT
CGCAGTAGCAGCTGCAACAACAGCAGCAGCAACTGCAGCAAAGAAGGGTA
GAGAAATAGAGAGAACGGGAAGGAGGCAGAGAATGTAGATGAGAAAGCAT
AGGTCGAGGAAAAAGCATTGCCTTCTTTCTTTCCCAACTGTGTGCGTTCT
CTCTTTCCTTACTCCCGCGTGCTGGCAAGCACGCAGACAGGCAGCGATAG
AGAGTAAGAATAAGAAAAGGTGCTTGTAAGAAAGAAAATGGATAAAGTAG
ACAGGACCAAAAAACTCCTCTATGGACTTACAACGCGCTCGTTTCTTTCA
GTCCAGTCAGCAATCGCCAATATATTTCCTAGCCTTGCTTTTGGCTCCAT
TTCATCTATTTTCTTCGAGTGACAGGTATCCACCAACGCCTCCTCCGCAA
GCAAAACACACTTATCGAAAACCACACGCAGAGCGACTGACTCCTTAGAT
TTTGGGCCCCCCTTTTCCATACCCAGGTATCTCAACCTTACGCTCAAGAG
AAAGTAATGGCGAGGGTAAGAATAAGTGAAAGCTAATTGATGCATGTGAG
CGACTCGATCTCTCTTCGCGCGCATATATTGT back to topprotein sequence of NO09G00540.3 >NO09G00540.3-protein ID=NO09G00540.3-protein|Name=NO09G00540.3|organism=Nannochloropsis oceanica|type=polypeptide|length=406bp
MVLRCLGPAESDWMNRSQVVTKEGISGGRRRNATGGKDSMVFQDTTVSRR
HFEAGYGPIDETGHAGFYIQDLGSAGGTYLRLRPREAMGLRDGAMILVGK
HQFIVLAPSRFLELEQQQQPQPPTASTAPFAVPPMSSSSTPPPPPSRNMD
LVDQSDHALLGVSPTSGGGGATPAVEVTDESSGASTGAGGGVSERGAYGG
KTMGASIQGYLQRPKAPLVSADEGPPRPLLMLKCFAPEGSPMQHRVFAVG
TEGATVGRKQSNTVSLSQEKGGEVLGLDSAVSGEHCRLEYHPDKGAFVLL
DGGLGGDKPSTNGTWARLSYMQMASPRQILEREDEILVGGILRFAVSFES
FLMEGVVPPRGEEGQEGRGEESGGGGGEGGISDGETLTPRSKQEKEVEEE
SMDVS* back to topmRNA from alignment at chr9:215077..217906+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G00540.3 ID=NO09G00540.3|Name=NO09G00540.3|organism=Nannochloropsis oceanica|type=mRNA|length=2830bp|location=Sequence derived from alignment at chr9:215077..217906+ (Nannochloropsis oceanica)
CCACAGGCCACATCGCGCATCTTCCTGCTATCTGAGGGCCGGAAACACGC
TGCTGGACGTGGACACTGCAGCAGAAAGGCGGCAGTACGCAGGCAAATGA
CGCCCAGACCTGTGATTGTGCGGGGGCGCATAAGAGATGAGTTTCAATGT
CCCATTACAGCACAAATTCTCAGGTAAGGCCACCAAGGCTGGGCCAAAAT
GGCAATCGATATGTATGGAGATAGAGCGTTGAGATTGTGTGGGTGGGGTG
ATCGCCATGCCCTCGAGTTTCGTCCCCTGGTCGTAAATCCCCTTCGCCTT
TCTCCCCTTATGTCCCTCCTCTCTTGCCACTATCTTCATGCCGCTTACCC
CTTCAAACAGAGACCCCGTCGTAGCGAAGGATGGACACACATATGAACGC
TCCGCCATCAGCCTCTGGCTTGAAACCCACAAGACATCTCCCATGGTAAA
CACTTTCCTTACCATCCTCTCCTCCCCCTCTGCCTCGCCTCTCTCCAGGA
AGAGCATAAGAATATACCTCTCCTTTCTCTGCTCCCCCCCTTACAGACCA
AAGAGGAAATCAGCTCCGCAGATCTAGTCGCGAACCTGAACCTCAAGCGA
CTCATCTACGATCTAGTCGCAGAGGGCGGACATGGGCTGGCAGCCAAGCC
CACCAATGCCGAAGAAGCATCCCAAGAGACGGCATTTGGGTTCGACGACG
TGATGGTCCTCCGTTGTTTAGGGCCGGCCGAATCCGATTGGATGAACCGC
AGCCAAGTCGTGACGAAGGAGGGCATTTCTGGGGGACGCAGGAGGAATGC
CACCGGAGGAAAGGACTCGATGGTCTTCCAAGTGCGTTAAATTTCCATTT
TTTGTCTTGCCCATCTTTCACTGCCCCCTCCCTCCACACCTTCACCTCCC
TTTTCTTTCTCAGGTCAAAGCATACGCACACTCCCCTCTGTCCTCCCCCT
TCTCACATTTCTCCTCCCCCTTTCCTCCTCCCCCCTTGTCAGGACACCAC
GGTCTCTCGGCGTCACTTCGAGGCCGGTTACGGCCCCATCGACGAGACAG
GCCACGCCGGTTTCTACATCCAGGACCTCGGTTCCGCCGGGGGCACCTAC
CTCCGCCTCCGCCCTCGGGAAGCAATGGGCCTGAGAGACGGCGCCATGAT
CCTCGTGGGAAAGCATCAATTTATTGTTCTTGCCCCCTCCCGTTTCCTTG
AACTCGAGCAGCAGCAACAGCCGCAACCACCAACAGCTTCTACCGCGCCT
TTTGCCGTCCCTCCTATGAGCAGCTCTTCCACTCCGCCACCACCTCCTAG
CCGGAACATGGATCTCGTCGACCAAAGTGACCATGCACTCCTTGGAGTTT
CTCCAACGTCTGGAGGAGGAGGAGCAACACCAGCAGTAGAAGTAACAGAT
GAATCGAGCGGTGCGAGTACCGGCGCAGGTGGAGGAGTGTCAGAAAGAGG
GGCGTATGGAGGCAAGACGATGGGAGCATCGATTCAAGGGTATTTACAGA
GGCCAAAGGCCCCATTGGTGAGCGCGGATGAAGGACCGCCGCGGCCGTTG
CTGATGCTCAAATGCTTCGCACCTGAGGGGTCGCCGATGCAGCACCGTGT
GTTTGCCGTGGGCACAGAGGGTGCGACGGTGGGACGGAAGCAGAGTAATA
CTGTGTCCTTATCGCAGGAGAAGGGGGGAGAGGTCCTGGGGCTTGACTCG
GCTGTGTCGGGCGAGCATTGTCGGTTGGAGTACCACCCTGACAAGGGGGC
CTTCGTCCTGCTGGATGGGGGACTGGGGGGGGACAAGCCGTCGACAAATG
GAACATGGGCCCGGTTGAGCTACATGCAGATGGCCAGTCCAAGACAGATA
TTGGAGAGAGAGGACGAGATTCTCGTTGGGGGGATATTGAGGTTTGCGGT
GTCTTTCGAGAGTTTTTTGATGGAAGGCGTTGTTCCTCCGAGGGGCGAGG
AGGGGCAGGAGGGGAGAGGTGAGGAAAGCGGGGGAGGAGGGGGAGAAGGC
GGGATATCGGATGGGGAGACTTTGACGCCGAGAAGTAAGCAGGAGAAGGA
GGTGGAGGAGGAGTCGATGGACGTTTCATGATAATAGTTTTTGGGATGTG
AGGAGGAAGGGAGGGAGGAATGAGAAGGGGGGATGGAGAGGGGAAGGAAT
GGAGGGAGGAAGGGATTTGACCGATAGAAATATCAGCTGGTGGTTAAAGG
AGAGCCATCAAATTGTGTACACATTCATAAGACCCTTTCATTGTGAGTCG
CAGTAGCAGCTGCAACAACAGCAGCAGCAACTGCAGCAAAGAAGGGTAGA
GAAATAGAGAGAACGGGAAGGAGGCAGAGAATGTAGATGAGAAAGCATAG
GTCGAGGAAAAAGCATTGCCTTCTTTCTTTCCCAACTGTGTGCGTTCTCT
CTTTCCTTACTCCCGCGTGCTGGCAAGCACGCAGACAGGCAGCGATAGAG
AGTAAGAATAAGAAAAGGTGCTTGTAAGAAAGAAAATGGATAAAGTAGAC
AGGACCAAAAAACTCCTCTATGGACTTACAACGCGCTCGTTTCTTTCAGT
CCAGTCAGCAATCGCCAATATATTTCCTAGCCTTGCTTTTGGCTCCATTT
CATCTATTTTCTTCGAGTGACAGGTATCCACCAACGCCTCCTCCGCAAGC
AAAACACACTTATCGAAAACCACACGCAGAGCGACTGACTCCTTAGATTT
TGGGCCCCCCTTTTCCATACCCAGGTATCTCAACCTTACGCTCAAGAGAA
AGTAATGGCGAGGGTAAGAATAAGTGAAAGCTAATTGATGCATGTGAGCG
ACTCGATCTCTCTTCGCGCGCATATATTGT back to topCoding sequence (CDS) from alignment at chr9:215077..217906+ >NO09G00540.3 ID=NO09G00540.3|Name=NO09G00540.3|organism=Nannochloropsis oceanica|type=CDS|length=1218bp|location=Sequence derived from alignment at chr9:215077..217906+ (Nannochloropsis oceanica)
ATGGTCCTCCGTTGTTTAGGGCCGGCCGAATCCGATTGGATGAACCGCAG
CCAAGTCGTGACGAAGGAGGGCATTTCTGGGGGACGCAGGAGGAATGCCA
CCGGAGGAAAGGACTCGATGGTCTTCCAAGACACCACGGTCTCTCGGCGT
CACTTCGAGGCCGGTTACGGCCCCATCGACGAGACAGGCCACGCCGGTTT
CTACATCCAGGACCTCGGTTCCGCCGGGGGCACCTACCTCCGCCTCCGCC
CTCGGGAAGCAATGGGCCTGAGAGACGGCGCCATGATCCTCGTGGGAAAG
CATCAATTTATTGTTCTTGCCCCCTCCCGTTTCCTTGAACTCGAGCAGCA
GCAACAGCCGCAACCACCAACAGCTTCTACCGCGCCTTTTGCCGTCCCTC
CTATGAGCAGCTCTTCCACTCCGCCACCACCTCCTAGCCGGAACATGGAT
CTCGTCGACCAAAGTGACCATGCACTCCTTGGAGTTTCTCCAACGTCTGG
AGGAGGAGGAGCAACACCAGCAGTAGAAGTAACAGATGAATCGAGCGGTG
CGAGTACCGGCGCAGGTGGAGGAGTGTCAGAAAGAGGGGCGTATGGAGGC
AAGACGATGGGAGCATCGATTCAAGGGTATTTACAGAGGCCAAAGGCCCC
ATTGGTGAGCGCGGATGAAGGACCGCCGCGGCCGTTGCTGATGCTCAAAT
GCTTCGCACCTGAGGGGTCGCCGATGCAGCACCGTGTGTTTGCCGTGGGC
ACAGAGGGTGCGACGGTGGGACGGAAGCAGAGTAATACTGTGTCCTTATC
GCAGGAGAAGGGGGGAGAGGTCCTGGGGCTTGACTCGGCTGTGTCGGGCG
AGCATTGTCGGTTGGAGTACCACCCTGACAAGGGGGCCTTCGTCCTGCTG
GATGGGGGACTGGGGGGGGACAAGCCGTCGACAAATGGAACATGGGCCCG
GTTGAGCTACATGCAGATGGCCAGTCCAAGACAGATATTGGAGAGAGAGG
ACGAGATTCTCGTTGGGGGGATATTGAGGTTTGCGGTGTCTTTCGAGAGT
TTTTTGATGGAAGGCGTTGTTCCTCCGAGGGGCGAGGAGGGGCAGGAGGG
GAGAGGTGAGGAAAGCGGGGGAGGAGGGGGAGAAGGCGGGATATCGGATG
GGGAGACTTTGACGCCGAGAAGTAAGCAGGAGAAGGAGGTGGAGGAGGAG
TCGATGGACGTTTCATGA back to top
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