NO09G00540.2, NO09G00540.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G00540.2
Unique NameNO09G00540.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2381
Alignment locationchr9:215077..217906 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:215077..217906 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO09G00540.2 vs.
Match: EWM27716.1 (SMAD/FHA domain protein [Nannochloropsis gaditana])

HSP 1 Score: 648.3 bits (1671), Expect = 2.000e-182
Identity = 366/518 (70.66%), Postives = 401/518 (77.41%), Query Frame = 0 
Query:    5 PVIVRGRIRDEFQCPITAQILRDPVVAKDGHTYERSAISLWLETHKTSPMTKEEISSADLVANLNLKRLIYDLVAEGGHGLAAKPTNAEEASQETAFGFDDVMVLRCLGPAESDWMNRSQVVTKEGISGGRRRNATGGKDSMVFQDTTVSRRHFEAGYGPIDETGHAGFYIQDLGSAGGTYLRLRPREAMGLRDGAMILVGKHQFIVLAPSRFLELEQQQQPQPPTASTAPFAVPPMSSSSTPPPPPSRNMDLVDQS--DHALLGVSPTSGGGGATPAVEVTDESSGASTGAGGGVSE-RGAYGGK-TMGASIQGYLQRPKAPLVSADEGPPRPLLMLKCFAPEGSPMQHRVFAVGTEGATVGRKQSNTVSLSQEKGGEVLGLDSAVSGEHCRLEYHPDKGAFVLLDGGLGGDKPSTNGTWARLSYMQMASPRQILEREDEILVGGILRFAVSFESFLMEGVVPPRGEEGQEGRGEESGGGGGEGGI---SDGETLTPRSKQEKE----VEEESMDVS 512
            PVIVRGRIRDEFQCPITAQI RDPVVAKDG TYERSAIS WLET+KTSPMTKEEISSADLV NLNLKRLIYDLVAEGGHGLAAK T  EE S ETAFG DDVMVLRCLGPAESDW++RSQVVTKEGI GGRRR  TGGKDSMVFQDTTVSRRHFEAG+GP+DET    FYIQDLGSAGGTYLRLRPRE M LRDGAMILVGKHQFIV++PSR  EL Q   P   T  +A  A     +S+T P P S      D +  +     + P S   GA  A+   D +   S   GGG S  RG  G    +G  IQ YLQ+P+APLVSA EG  +PLLML+CFAPEGSPMQHRVFAVG EGA++GRKQSNTVSLSQEKGGEVLGLDSAVSGEHCR+EYH +KG FVL+DGGLGGDKPSTNGTW RLSY+ M S RQ +ER+DEILVGGILRF+VSFE+FLME VVPPR EEG   +  ++GG  GEG +   SDGE  TPRSKQ+KE      EE MD S
Sbjct:    6 PVIVRGRIRDEFQCPITAQIFRDPVVAKDGRTYERSAISKWLETNKTSPMTKEEISSADLVPNLNLKRLIYDLVAEGGHGLAAKCTTTEELSHETAFGLDDVMVLRCLGPAESDWIHRSQVVTKEGILGGRRRILTGGKDSMVFQDTTVSRRHFEAGWGPVDETSLPSFYIQDLGSAGGTYLRLRPREIMELRDGAMILVGKHQFIVISPSRLHEL-QLPAPACRTGQSA-VAFEAFHNSATIPTPLSPGAPGTDDNTENQGFPNMPPASAAAGAV-ALGTEDPNDSISGAGGGGESGLRGRQGQDFPLGRLIQRYLQQPEAPLVSAGEGSEQPLLMLQCFAPEGSPMQHRVFAVGVEGASIGRKQSNTVSLSQEKGGEVLGLDSAVSGEHCRIEYHHEKGGFVLVDGGLGGDKPSTNGTWTRLSYIHMTSARQKVERDDEILVGGILRFSVSFETFLMESVVPPR-EEG--AKACDTGGRDGEGAVGMMSDGEGSTPRSKQDKENGPIGREEPMDTS 517
The following BLAST results are available for this feature:
BLAST of NO09G00540.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27716.12.000e-18270.66SMAD/FHA domain protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G00540NO09G00540Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G00540.2NO09G00540.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G00540.2.cds1NO09G00540.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00540.2.cds2NO09G00540.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00540.2.cds3NO09G00540.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00540.2.cds4NO09G00540.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G00540.2 ID=NO09G00540.2|Name=NO09G00540.2|organism=Nannochloropsis oceanica|type=mRNA|length=2381bp
CCACAGGCCACATCGCGCATCTTCCTGCTATCTGAGGGCCGGAAACACGC
TGCTGGACGTGGACACTGCAGCAGAAAGGCGGCAGTACGCAGGCAAATGA
CGCCCAGACCTGTGATTGTGCGGGGGCGCATAAGAGATGAGTTTCAATGT
CCCATTACAGCACAAATTCTCAGAGACCCCGTCGTAGCGAAGGATGGACA
CACATATGAACGCTCCGCCATCAGCCTCTGGCTTGAAACCCACAAGACAT
CTCCCATGACCAAAGAGGAAATCAGCTCCGCAGATCTAGTCGCGAACCTG
AACCTCAAGCGACTCATCTACGATCTAGTCGCAGAGGGCGGACATGGGCT
GGCAGCCAAGCCCACCAATGCCGAAGAAGCATCCCAAGAGACGGCATTTG
GGTTCGACGACGTGATGGTCCTCCGTTGTTTAGGGCCGGCCGAATCCGAT
TGGATGAACCGCAGCCAAGTCGTGACGAAGGAGGGCATTTCTGGGGGACG
CAGGAGGAATGCCACCGGAGGAAAGGACTCGATGGTCTTCCAAGACACCA
CGGTCTCTCGGCGTCACTTCGAGGCCGGTTACGGCCCCATCGACGAGACA
GGCCACGCCGGTTTCTACATCCAGGACCTCGGTTCCGCCGGGGGCACCTA
CCTCCGCCTCCGCCCTCGGGAAGCAATGGGCCTGAGAGACGGCGCCATGA
TCCTCGTGGGAAAGCATCAATTTATTGTTCTTGCCCCCTCCCGTTTCCTT
GAACTCGAGCAGCAGCAACAGCCGCAACCACCAACAGCTTCTACCGCGCC
TTTTGCCGTCCCTCCTATGAGCAGCTCTTCCACTCCGCCACCACCTCCTA
GCCGGAACATGGATCTCGTCGACCAAAGTGACCATGCACTCCTTGGAGTT
TCTCCAACGTCTGGAGGAGGAGGAGCAACACCAGCAGTAGAAGTAACAGA
TGAATCGAGCGGTGCGAGTACCGGCGCAGGTGGAGGAGTGTCAGAAAGAG
GGGCGTATGGAGGCAAGACGATGGGAGCATCGATTCAAGGGTATTTACAG
AGGCCAAAGGCCCCATTGGTGAGCGCGGATGAAGGACCGCCGCGGCCGTT
GCTGATGCTCAAATGCTTCGCACCTGAGGGGTCGCCGATGCAGCACCGTG
TGTTTGCCGTGGGCACAGAGGGTGCGACGGTGGGACGGAAGCAGAGTAAT
ACTGTGTCCTTATCGCAGGAGAAGGGGGGAGAGGTCCTGGGGCTTGACTC
GGCTGTGTCGGGCGAGCATTGTCGGTTGGAGTACCACCCTGACAAGGGGG
CCTTCGTCCTGCTGGATGGGGGACTGGGGGGGGACAAGCCGTCGACAAAT
GGAACATGGGCCCGGTTGAGCTACATGCAGATGGCCAGTCCAAGACAGAT
ATTGGAGAGAGAGGACGAGATTCTCGTTGGGGGGATATTGAGGTTTGCGG
TGTCTTTCGAGAGTTTTTTGATGGAAGGCGTTGTTCCTCCGAGGGGCGAG
GAGGGGCAGGAGGGGAGAGGTGAGGAAAGCGGGGGAGGAGGGGGAGAAGG
CGGGATATCGGATGGGGAGACTTTGACGCCGAGAAGTAAGCAGGAGAAGG
AGGTGGAGGAGGAGTCGATGGACGTTTCATGATAATAGTTTTTGGGATGT
GAGGAGGAAGGGAGGGAGGAATGAGAAGGGGGGATGGAGAGGGGAAGGAA
TGGAGGGAGGAAGGGATTTGACCGATAGAAATATCAGCTGGTGGTTAAAG
GAGAGCCATCAAATTGTGTACACATTCATAAGACCCTTTCATTGTGAGTC
GCAGTAGCAGCTGCAACAACAGCAGCAGCAACTGCAGCAAAGAAGGGTAG
AGAAATAGAGAGAACGGGAAGGAGGCAGAGAATGTAGATGAGAAAGCATA
GGTCGAGGAAAAAGCATTGCCTTCTTTCTTTCCCAACTGTGTGCGTTCTC
TCTTTCCTTACTCCCGCGTGCTGGCAAGCACGCAGACAGGCAGCGATAGA
GAGTAAGAATAAGAAAAGGTGCTTGTAAGAAAGAAAATGGATAAAGTAGA
CAGGACCAAAAAACTCCTCTATGGACTTACAACGCGCTCGTTTCTTTCAG
TCCAGTCAGCAATCGCCAATATATTTCCTAGCCTTGCTTTTGGCTCCATT
TCATCTATTTTCTTCGAGTGACAGGTATCCACCAACGCCTCCTCCGCAAG
CAAAACACACTTATCGAAAACCACACGCAGAGCGACTGACTCCTTAGATT
TTGGGCCCCCCTTTTCCATACCCAGGTATCTCAACCTTACGCTCAAGAGA
AAGTAATGGCGAGGGTAAGAATAAGTGAAAGCTAATTGATGCATGTGAGC
GACTCGATCTCTCTTCGCGCGCATATATTGT
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protein sequence of NO09G00540.2

>NO09G00540.2-protein ID=NO09G00540.2-protein|Name=NO09G00540.2|organism=Nannochloropsis oceanica|type=polypeptide|length=512bp
MTPRPVIVRGRIRDEFQCPITAQILRDPVVAKDGHTYERSAISLWLETHK
TSPMTKEEISSADLVANLNLKRLIYDLVAEGGHGLAAKPTNAEEASQETA
FGFDDVMVLRCLGPAESDWMNRSQVVTKEGISGGRRRNATGGKDSMVFQD
TTVSRRHFEAGYGPIDETGHAGFYIQDLGSAGGTYLRLRPREAMGLRDGA
MILVGKHQFIVLAPSRFLELEQQQQPQPPTASTAPFAVPPMSSSSTPPPP
PSRNMDLVDQSDHALLGVSPTSGGGGATPAVEVTDESSGASTGAGGGVSE
RGAYGGKTMGASIQGYLQRPKAPLVSADEGPPRPLLMLKCFAPEGSPMQH
RVFAVGTEGATVGRKQSNTVSLSQEKGGEVLGLDSAVSGEHCRLEYHPDK
GAFVLLDGGLGGDKPSTNGTWARLSYMQMASPRQILEREDEILVGGILRF
AVSFESFLMEGVVPPRGEEGQEGRGEESGGGGGEGGISDGETLTPRSKQE
KEVEEESMDVS*
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mRNA from alignment at chr9:215077..217906+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G00540.2 ID=NO09G00540.2|Name=NO09G00540.2|organism=Nannochloropsis oceanica|type=mRNA|length=2830bp|location=Sequence derived from alignment at chr9:215077..217906+ (Nannochloropsis oceanica)
CCACAGGCCACATCGCGCATCTTCCTGCTATCTGAGGGCCGGAAACACGC
TGCTGGACGTGGACACTGCAGCAGAAAGGCGGCAGTACGCAGGCAAATGA
CGCCCAGACCTGTGATTGTGCGGGGGCGCATAAGAGATGAGTTTCAATGT
CCCATTACAGCACAAATTCTCAGGTAAGGCCACCAAGGCTGGGCCAAAAT
GGCAATCGATATGTATGGAGATAGAGCGTTGAGATTGTGTGGGTGGGGTG
ATCGCCATGCCCTCGAGTTTCGTCCCCTGGTCGTAAATCCCCTTCGCCTT
TCTCCCCTTATGTCCCTCCTCTCTTGCCACTATCTTCATGCCGCTTACCC
CTTCAAACAGAGACCCCGTCGTAGCGAAGGATGGACACACATATGAACGC
TCCGCCATCAGCCTCTGGCTTGAAACCCACAAGACATCTCCCATGGTAAA
CACTTTCCTTACCATCCTCTCCTCCCCCTCTGCCTCGCCTCTCTCCAGGA
AGAGCATAAGAATATACCTCTCCTTTCTCTGCTCCCCCCCTTACAGACCA
AAGAGGAAATCAGCTCCGCAGATCTAGTCGCGAACCTGAACCTCAAGCGA
CTCATCTACGATCTAGTCGCAGAGGGCGGACATGGGCTGGCAGCCAAGCC
CACCAATGCCGAAGAAGCATCCCAAGAGACGGCATTTGGGTTCGACGACG
TGATGGTCCTCCGTTGTTTAGGGCCGGCCGAATCCGATTGGATGAACCGC
AGCCAAGTCGTGACGAAGGAGGGCATTTCTGGGGGACGCAGGAGGAATGC
CACCGGAGGAAAGGACTCGATGGTCTTCCAAGTGCGTTAAATTTCCATTT
TTTGTCTTGCCCATCTTTCACTGCCCCCTCCCTCCACACCTTCACCTCCC
TTTTCTTTCTCAGGTCAAAGCATACGCACACTCCCCTCTGTCCTCCCCCT
TCTCACATTTCTCCTCCCCCTTTCCTCCTCCCCCCTTGTCAGGACACCAC
GGTCTCTCGGCGTCACTTCGAGGCCGGTTACGGCCCCATCGACGAGACAG
GCCACGCCGGTTTCTACATCCAGGACCTCGGTTCCGCCGGGGGCACCTAC
CTCCGCCTCCGCCCTCGGGAAGCAATGGGCCTGAGAGACGGCGCCATGAT
CCTCGTGGGAAAGCATCAATTTATTGTTCTTGCCCCCTCCCGTTTCCTTG
AACTCGAGCAGCAGCAACAGCCGCAACCACCAACAGCTTCTACCGCGCCT
TTTGCCGTCCCTCCTATGAGCAGCTCTTCCACTCCGCCACCACCTCCTAG
CCGGAACATGGATCTCGTCGACCAAAGTGACCATGCACTCCTTGGAGTTT
CTCCAACGTCTGGAGGAGGAGGAGCAACACCAGCAGTAGAAGTAACAGAT
GAATCGAGCGGTGCGAGTACCGGCGCAGGTGGAGGAGTGTCAGAAAGAGG
GGCGTATGGAGGCAAGACGATGGGAGCATCGATTCAAGGGTATTTACAGA
GGCCAAAGGCCCCATTGGTGAGCGCGGATGAAGGACCGCCGCGGCCGTTG
CTGATGCTCAAATGCTTCGCACCTGAGGGGTCGCCGATGCAGCACCGTGT
GTTTGCCGTGGGCACAGAGGGTGCGACGGTGGGACGGAAGCAGAGTAATA
CTGTGTCCTTATCGCAGGAGAAGGGGGGAGAGGTCCTGGGGCTTGACTCG
GCTGTGTCGGGCGAGCATTGTCGGTTGGAGTACCACCCTGACAAGGGGGC
CTTCGTCCTGCTGGATGGGGGACTGGGGGGGGACAAGCCGTCGACAAATG
GAACATGGGCCCGGTTGAGCTACATGCAGATGGCCAGTCCAAGACAGATA
TTGGAGAGAGAGGACGAGATTCTCGTTGGGGGGATATTGAGGTTTGCGGT
GTCTTTCGAGAGTTTTTTGATGGAAGGCGTTGTTCCTCCGAGGGGCGAGG
AGGGGCAGGAGGGGAGAGGTGAGGAAAGCGGGGGAGGAGGGGGAGAAGGC
GGGATATCGGATGGGGAGACTTTGACGCCGAGAAGTAAGCAGGAGAAGGA
GGTGGAGGAGGAGTCGATGGACGTTTCATGATAATAGTTTTTGGGATGTG
AGGAGGAAGGGAGGGAGGAATGAGAAGGGGGGATGGAGAGGGGAAGGAAT
GGAGGGAGGAAGGGATTTGACCGATAGAAATATCAGCTGGTGGTTAAAGG
AGAGCCATCAAATTGTGTACACATTCATAAGACCCTTTCATTGTGAGTCG
CAGTAGCAGCTGCAACAACAGCAGCAGCAACTGCAGCAAAGAAGGGTAGA
GAAATAGAGAGAACGGGAAGGAGGCAGAGAATGTAGATGAGAAAGCATAG
GTCGAGGAAAAAGCATTGCCTTCTTTCTTTCCCAACTGTGTGCGTTCTCT
CTTTCCTTACTCCCGCGTGCTGGCAAGCACGCAGACAGGCAGCGATAGAG
AGTAAGAATAAGAAAAGGTGCTTGTAAGAAAGAAAATGGATAAAGTAGAC
AGGACCAAAAAACTCCTCTATGGACTTACAACGCGCTCGTTTCTTTCAGT
CCAGTCAGCAATCGCCAATATATTTCCTAGCCTTGCTTTTGGCTCCATTT
CATCTATTTTCTTCGAGTGACAGGTATCCACCAACGCCTCCTCCGCAAGC
AAAACACACTTATCGAAAACCACACGCAGAGCGACTGACTCCTTAGATTT
TGGGCCCCCCTTTTCCATACCCAGGTATCTCAACCTTACGCTCAAGAGAA
AGTAATGGCGAGGGTAAGAATAAGTGAAAGCTAATTGATGCATGTGAGCG
ACTCGATCTCTCTTCGCGCGCATATATTGT
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Coding sequence (CDS) from alignment at chr9:215077..217906+

>NO09G00540.2 ID=NO09G00540.2|Name=NO09G00540.2|organism=Nannochloropsis oceanica|type=CDS|length=1536bp|location=Sequence derived from alignment at chr9:215077..217906+ (Nannochloropsis oceanica)
ATGACGCCCAGACCTGTGATTGTGCGGGGGCGCATAAGAGATGAGTTTCA
ATGTCCCATTACAGCACAAATTCTCAGAGACCCCGTCGTAGCGAAGGATG
GACACACATATGAACGCTCCGCCATCAGCCTCTGGCTTGAAACCCACAAG
ACATCTCCCATGACCAAAGAGGAAATCAGCTCCGCAGATCTAGTCGCGAA
CCTGAACCTCAAGCGACTCATCTACGATCTAGTCGCAGAGGGCGGACATG
GGCTGGCAGCCAAGCCCACCAATGCCGAAGAAGCATCCCAAGAGACGGCA
TTTGGGTTCGACGACGTGATGGTCCTCCGTTGTTTAGGGCCGGCCGAATC
CGATTGGATGAACCGCAGCCAAGTCGTGACGAAGGAGGGCATTTCTGGGG
GACGCAGGAGGAATGCCACCGGAGGAAAGGACTCGATGGTCTTCCAAGAC
ACCACGGTCTCTCGGCGTCACTTCGAGGCCGGTTACGGCCCCATCGACGA
GACAGGCCACGCCGGTTTCTACATCCAGGACCTCGGTTCCGCCGGGGGCA
CCTACCTCCGCCTCCGCCCTCGGGAAGCAATGGGCCTGAGAGACGGCGCC
ATGATCCTCGTGGGAAAGCATCAATTTATTGTTCTTGCCCCCTCCCGTTT
CCTTGAACTCGAGCAGCAGCAACAGCCGCAACCACCAACAGCTTCTACCG
CGCCTTTTGCCGTCCCTCCTATGAGCAGCTCTTCCACTCCGCCACCACCT
CCTAGCCGGAACATGGATCTCGTCGACCAAAGTGACCATGCACTCCTTGG
AGTTTCTCCAACGTCTGGAGGAGGAGGAGCAACACCAGCAGTAGAAGTAA
CAGATGAATCGAGCGGTGCGAGTACCGGCGCAGGTGGAGGAGTGTCAGAA
AGAGGGGCGTATGGAGGCAAGACGATGGGAGCATCGATTCAAGGGTATTT
ACAGAGGCCAAAGGCCCCATTGGTGAGCGCGGATGAAGGACCGCCGCGGC
CGTTGCTGATGCTCAAATGCTTCGCACCTGAGGGGTCGCCGATGCAGCAC
CGTGTGTTTGCCGTGGGCACAGAGGGTGCGACGGTGGGACGGAAGCAGAG
TAATACTGTGTCCTTATCGCAGGAGAAGGGGGGAGAGGTCCTGGGGCTTG
ACTCGGCTGTGTCGGGCGAGCATTGTCGGTTGGAGTACCACCCTGACAAG
GGGGCCTTCGTCCTGCTGGATGGGGGACTGGGGGGGGACAAGCCGTCGAC
AAATGGAACATGGGCCCGGTTGAGCTACATGCAGATGGCCAGTCCAAGAC
AGATATTGGAGAGAGAGGACGAGATTCTCGTTGGGGGGATATTGAGGTTT
GCGGTGTCTTTCGAGAGTTTTTTGATGGAAGGCGTTGTTCCTCCGAGGGG
CGAGGAGGGGCAGGAGGGGAGAGGTGAGGAAAGCGGGGGAGGAGGGGGAG
AAGGCGGGATATCGGATGGGGAGACTTTGACGCCGAGAAGTAAGCAGGAG
AAGGAGGTGGAGGAGGAGTCGATGGACGTTTCATGA
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Synonyms
Publications