NO09G00470.1, NO09G00470.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G00470.1
Unique NameNO09G00470.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1686
Alignment locationchr9:198890..200668 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:198890..200668 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G00470.1 vs.
Match: EWM27715.1 (aaa family cdc48 subfamily [Nannochloropsis gaditana])

HSP 1 Score: 592.0 bits (1525), Expect = 1.900e-165
Identity = 328/563 (58.26%), Postives = 407/563 (72.29%), Query Frame = 0 
Query:    9 DGACRGR--IIEGELPGLHRHIDLLLRLLDDFVGIGGEINGH----AARGVVLEGPSGSGKTALAKAVGKYGGLPFHYFSCPSFFGPDRGDAERCVLGAFQACADKAAADDCGGCLLILDEVESIGKDRNRARVVTDLGVLAMLLECFHRPAFACVFIVGIAGDASVLDPSLLQPGRLEVTFSLIAPTLQQRQAILQNLLYRLGTTLKVKGKGDNVSRQ-HLLESLTRGTRGFSSADLSRLCTEALASAHSRSNTTTDTLSIQEEDWESALESARPIDIPWSSPSGAQLSDLAGMDDIIRTLSEAVLLPLSRPDTLAAMGVPRVSFGVLLHGPSGTGKSSLGRALATAARPYASFLAVECPELVNKVVGESERAVARLFQTARQVAPCILFLDHVEAIAGKRGFDSSTEQTMDRLLSTLLVEMDGLGSGG-EGEGGGNQLIVVVAVTNHFSMLDDAILRPGRLGLHMEIGLPDVEGRTAIYSHHLARLPLCFDEA-DGVESK---DFASLSSLASHMARMSEGLSGADIQGVCQEAALLGLREDLNRKHLLPRHILRALAVLR 560
            D  C+ R   IE +LPGL   IDLLLRL+D F   GG         A RG +LEG  G+GKTALAK++ ++GGLP +Y SCPS F  DRGDAER +   FQ C  KAA  +   CLL+LD+++ IGKDR +AR V+DLG+LAMLLEC      A VF++ IAGDAS++D  LLQPGRLE+T  L +   +QR+ IL NLL +L T      +  ++     LL+SL   TRGF+ ADL+ LC+ AL SA  RS ++ D + I+EEDWE A+E A PIDIPW    GA+LSDLAGMD+II+T+SE +L PL +P+ L AMGVPR SFGVLL+GPSGTGK++LG ALA AA+ +ASFLAVEC ELVNKVVGESERAVARLFQ AR  APCILFLDHVEAIAG+RGFD+S+EQTMDR+LSTLL+EMDGL +G    +  G+ +++VVA TN  SMLD+A LRPGRL + +E+ LPD E R AI+  H +R+PL FD A  G++S+    F  L   A  MA +SEGLSGADIQG+CQEAALL LREDL+R +LLPRH++ AL V R
Sbjct:   11 DKKCQHRRSAIEADLPGLEEDIDLLLRLIDGFSRNGGGSRDQSFCQAVRGALLEGGPGAGKTALAKSLARHGGLPSYYCSCPSLFSRDRGDAERGLQEIFQTCIQKAACSEKESCLLVLDDLDCIGKDRKKARHVSDLGILAMLLECLDHLRGAHVFVLAIAGDASLIDVGLLQPGRLEITLKLSSLKQEQREKILANLLGKLNTKSPRAVEESSIQYSGRLLDSLACRTRGFNGADLAYLCSSALTSALRRSQSS-DHVCIEEEDWEVAMEGAHPIDIPWLFVEGARLSDLAGMDEIIQTVSETILQPLLQPEALRAMGVPRASFGVLLYGPSGTGKTTLGLALAAAAQSHASFLAVECSELVNKVVGESERAVARLFQVARHRAPCILFLDHVEAIAGRRGFDTSSEQTMDRMLSTLLMEMDGLTAGDCMHDRTGSDMVIVVAATNLLSMLDEAFLRPGRLDILIEMALPDKEARAAIFLLHFSRMPLRFDTAVRGLKSEKNSTFTPLHEFAETMADLSEGLSGADIQGLCQEAALLALREDLDRSYLLPRHVMEALDVKR 572
The following BLAST results are available for this feature:
BLAST of NO09G00470.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27715.11.900e-16558.26aaa family cdc48 subfamily [Nannochloropsis gadita... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G00470NO09G00470Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G00470.1NO09G00470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G00470.1.cds1NO09G00470.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00470.1.cds2NO09G00470.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G00470.1 ID=NO09G00470.1|Name=NO09G00470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1686bp
ATGACGAGGCTGCGAGCGAGCGAGGACGGTGCCTGCCGTGGTCGTATTAT
CGAAGGGGAGCTGCCTGGCCTGCATCGACACATCGACCTCCTCCTCCGTC
TCCTCGACGACTTTGTAGGCATTGGCGGTGAGATAAACGGCCATGCGGCT
CGAGGCGTGGTACTGGAAGGTCCCTCGGGGTCAGGCAAGACGGCATTGGC
CAAGGCAGTGGGCAAGTATGGTGGGTTGCCCTTTCACTACTTCTCCTGCC
CCAGCTTCTTTGGTCCAGACCGAGGGGATGCGGAGAGGTGCGTGCTGGGA
GCCTTTCAAGCGTGTGCGGACAAGGCGGCCGCGGACGATTGTGGAGGTTG
CCTGCTCATTTTAGACGAGGTGGAGAGTATTGGCAAGGACCGCAACCGCG
CACGCGTCGTGACGGACCTAGGGGTATTGGCCATGCTTCTTGAGTGCTTC
CATCGGCCCGCATTTGCTTGTGTGTTTATCGTAGGCATCGCGGGGGATGC
CTCGGTCCTTGACCCCAGCCTCCTGCAACCTGGTCGACTGGAAGTCACTT
TCAGCCTAATCGCACCCACACTGCAGCAGCGTCAAGCCATACTCCAAAAT
CTACTTTACAGACTGGGCACAACACTTAAAGTGAAAGGCAAGGGAGACAA
TGTTTCGCGGCAGCATCTGCTCGAGAGTCTCACACGTGGAACTCGGGGCT
TTAGTAGCGCGGACCTCTCCCGCCTCTGCACCGAAGCCTTGGCCTCCGCC
CACAGCCGTAGCAACACAACTACCGATACTCTAAGTATTCAAGAAGAAGA
CTGGGAATCTGCATTGGAGAGCGCACGTCCAATTGACATTCCTTGGTCTT
CGCCTTCAGGGGCCCAATTATCCGACCTGGCAGGGATGGACGACATCATT
CGCACCCTCTCGGAAGCTGTTCTCCTTCCTCTCTCCCGCCCCGATACTCT
CGCAGCCATGGGTGTACCTCGCGTGTCGTTTGGCGTGCTGTTACATGGGC
CCTCAGGCACGGGGAAGAGCTCCTTGGGCCGAGCACTGGCGACGGCGGCG
AGGCCCTATGCGAGTTTCTTGGCCGTCGAGTGCCCTGAGTTGGTTAACAA
GGTGGTGGGAGAGTCCGAGAGGGCGGTGGCCCGATTATTTCAAACAGCCA
GACAAGTGGCGCCATGTATTTTATTTTTGGACCACGTGGAAGCGATAGCG
GGCAAGAGGGGATTTGACTCGTCGACGGAGCAGACGATGGATCGGTTGCT
TAGCACTTTGTTGGTAGAGATGGATGGGCTTGGAAGTGGAGGTGAAGGAG
AAGGAGGAGGGAATCAGCTTATTGTCGTAGTGGCAGTGACGAATCATTTC
TCCATGCTGGATGACGCGATCTTGAGACCGGGGCGGCTGGGGTTGCATAT
GGAGATAGGGTTGCCTGATGTGGAAGGACGGACGGCTATTTACTCGCATC
ATCTTGCACGACTGCCTTTGTGCTTTGATGAGGCTGATGGGGTAGAAAGC
AAGGACTTTGCGTCTTTATCTAGCTTGGCATCACACATGGCGAGAATGAG
CGAGGGGTTATCGGGCGCGGATATACAGGGGGTCTGTCAAGAGGCGGCCT
TGCTGGGCTTGCGGGAGGATTTGAATCGGAAGCATTTGCTGCCTAGGCAC
ATCTTGCGGGCATTGGCGGTGCTACGAGGGGGCTGA
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protein sequence of NO09G00470.1

>NO09G00470.1-protein ID=NO09G00470.1-protein|Name=NO09G00470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=562bp
MTRLRASEDGACRGRIIEGELPGLHRHIDLLLRLLDDFVGIGGEINGHAA
RGVVLEGPSGSGKTALAKAVGKYGGLPFHYFSCPSFFGPDRGDAERCVLG
AFQACADKAAADDCGGCLLILDEVESIGKDRNRARVVTDLGVLAMLLECF
HRPAFACVFIVGIAGDASVLDPSLLQPGRLEVTFSLIAPTLQQRQAILQN
LLYRLGTTLKVKGKGDNVSRQHLLESLTRGTRGFSSADLSRLCTEALASA
HSRSNTTTDTLSIQEEDWESALESARPIDIPWSSPSGAQLSDLAGMDDII
RTLSEAVLLPLSRPDTLAAMGVPRVSFGVLLHGPSGTGKSSLGRALATAA
RPYASFLAVECPELVNKVVGESERAVARLFQTARQVAPCILFLDHVEAIA
GKRGFDSSTEQTMDRLLSTLLVEMDGLGSGGEGEGGGNQLIVVVAVTNHF
SMLDDAILRPGRLGLHMEIGLPDVEGRTAIYSHHLARLPLCFDEADGVES
KDFASLSSLASHMARMSEGLSGADIQGVCQEAALLGLREDLNRKHLLPRH
ILRALAVLRGG*
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mRNA from alignment at chr9:198890..200668-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G00470.1 ID=NO09G00470.1|Name=NO09G00470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1779bp|location=Sequence derived from alignment at chr9:198890..200668- (Nannochloropsis oceanica)
ATGACGAGGCTGCGAGCGAGCGAGGACGGTGCCTGCCGTGGTCGTATTAT
CGAAGGGGAGCTGCCTGGCCTGCATCGACACATCGACCTCCTCCTCCGTC
TCCTCGACGACTTTGTAGGCATTGGCGGTGAGATAAACGGCCATGCGGCT
CGAGGCGTGGTACTGGAAGGTCCCTCGGGGTCAGGCAAGACGGCATTGGC
CAAGGCAGTGGGCAAGTATGGTGGGTTGCCCTTTCACTACTTCTCCTGCC
CCAGCTTCTTTGGTCCAGACCGAGGGGATGCGGAGAGGTGCGTGCTGGGA
GCCTTTCAAGCGTGTGCGGACAAGGCGGCCGCGGACGATTGTGGAGGTTG
CCTGCTCATTTTAGACGAGGTGGAGAGTATTGGCAAGGTGCGTCTGGAAG
TTATAGTGGGAAGTCGGTTGCGTGCACGGTTCGCCCCATCTCACCACCCC
TCCTCTCTACGCTTTCATACTCCAAAATAGGACCGCAACCGCGCACGCGT
CGTGACGGACCTAGGGGTATTGGCCATGCTTCTTGAGTGCTTCCATCGGC
CCGCATTTGCTTGTGTGTTTATCGTAGGCATCGCGGGGGATGCCTCGGTC
CTTGACCCCAGCCTCCTGCAACCTGGTCGACTGGAAGTCACTTTCAGCCT
AATCGCACCCACACTGCAGCAGCGTCAAGCCATACTCCAAAATCTACTTT
ACAGACTGGGCACAACACTTAAAGTGAAAGGCAAGGGAGACAATGTTTCG
CGGCAGCATCTGCTCGAGAGTCTCACACGTGGAACTCGGGGCTTTAGTAG
CGCGGACCTCTCCCGCCTCTGCACCGAAGCCTTGGCCTCCGCCCACAGCC
GTAGCAACACAACTACCGATACTCTAAGTATTCAAGAAGAAGACTGGGAA
TCTGCATTGGAGAGCGCACGTCCAATTGACATTCCTTGGTCTTCGCCTTC
AGGGGCCCAATTATCCGACCTGGCAGGGATGGACGACATCATTCGCACCC
TCTCGGAAGCTGTTCTCCTTCCTCTCTCCCGCCCCGATACTCTCGCAGCC
ATGGGTGTACCTCGCGTGTCGTTTGGCGTGCTGTTACATGGGCCCTCAGG
CACGGGGAAGAGCTCCTTGGGCCGAGCACTGGCGACGGCGGCGAGGCCCT
ATGCGAGTTTCTTGGCCGTCGAGTGCCCTGAGTTGGTTAACAAGGTGGTG
GGAGAGTCCGAGAGGGCGGTGGCCCGATTATTTCAAACAGCCAGACAAGT
GGCGCCATGTATTTTATTTTTGGACCACGTGGAAGCGATAGCGGGCAAGA
GGGGATTTGACTCGTCGACGGAGCAGACGATGGATCGGTTGCTTAGCACT
TTGTTGGTAGAGATGGATGGGCTTGGAAGTGGAGGTGAAGGAGAAGGAGG
AGGGAATCAGCTTATTGTCGTAGTGGCAGTGACGAATCATTTCTCCATGC
TGGATGACGCGATCTTGAGACCGGGGCGGCTGGGGTTGCATATGGAGATA
GGGTTGCCTGATGTGGAAGGACGGACGGCTATTTACTCGCATCATCTTGC
ACGACTGCCTTTGTGCTTTGATGAGGCTGATGGGGTAGAAAGCAAGGACT
TTGCGTCTTTATCTAGCTTGGCATCACACATGGCGAGAATGAGCGAGGGG
TTATCGGGCGCGGATATACAGGGGGTCTGTCAAGAGGCGGCCTTGCTGGG
CTTGCGGGAGGATTTGAATCGGAAGCATTTGCTGCCTAGGCACATCTTGC
GGGCATTGGCGGTGCTACGAGGGGGCTGA
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Coding sequence (CDS) from alignment at chr9:198890..200668-

>NO09G00470.1 ID=NO09G00470.1|Name=NO09G00470.1|organism=Nannochloropsis oceanica|type=CDS|length=1686bp|location=Sequence derived from alignment at chr9:198890..200668- (Nannochloropsis oceanica)
ATGACGAGGCTGCGAGCGAGCGAGGACGGTGCCTGCCGTGGTCGTATTAT
CGAAGGGGAGCTGCCTGGCCTGCATCGACACATCGACCTCCTCCTCCGTC
TCCTCGACGACTTTGTAGGCATTGGCGGTGAGATAAACGGCCATGCGGCT
CGAGGCGTGGTACTGGAAGGTCCCTCGGGGTCAGGCAAGACGGCATTGGC
CAAGGCAGTGGGCAAGTATGGTGGGTTGCCCTTTCACTACTTCTCCTGCC
CCAGCTTCTTTGGTCCAGACCGAGGGGATGCGGAGAGGTGCGTGCTGGGA
GCCTTTCAAGCGTGTGCGGACAAGGCGGCCGCGGACGATTGTGGAGGTTG
CCTGCTCATTTTAGACGAGGTGGAGAGTATTGGCAAGGACCGCAACCGCG
CACGCGTCGTGACGGACCTAGGGGTATTGGCCATGCTTCTTGAGTGCTTC
CATCGGCCCGCATTTGCTTGTGTGTTTATCGTAGGCATCGCGGGGGATGC
CTCGGTCCTTGACCCCAGCCTCCTGCAACCTGGTCGACTGGAAGTCACTT
TCAGCCTAATCGCACCCACACTGCAGCAGCGTCAAGCCATACTCCAAAAT
CTACTTTACAGACTGGGCACAACACTTAAAGTGAAAGGCAAGGGAGACAA
TGTTTCGCGGCAGCATCTGCTCGAGAGTCTCACACGTGGAACTCGGGGCT
TTAGTAGCGCGGACCTCTCCCGCCTCTGCACCGAAGCCTTGGCCTCCGCC
CACAGCCGTAGCAACACAACTACCGATACTCTAAGTATTCAAGAAGAAGA
CTGGGAATCTGCATTGGAGAGCGCACGTCCAATTGACATTCCTTGGTCTT
CGCCTTCAGGGGCCCAATTATCCGACCTGGCAGGGATGGACGACATCATT
CGCACCCTCTCGGAAGCTGTTCTCCTTCCTCTCTCCCGCCCCGATACTCT
CGCAGCCATGGGTGTACCTCGCGTGTCGTTTGGCGTGCTGTTACATGGGC
CCTCAGGCACGGGGAAGAGCTCCTTGGGCCGAGCACTGGCGACGGCGGCG
AGGCCCTATGCGAGTTTCTTGGCCGTCGAGTGCCCTGAGTTGGTTAACAA
GGTGGTGGGAGAGTCCGAGAGGGCGGTGGCCCGATTATTTCAAACAGCCA
GACAAGTGGCGCCATGTATTTTATTTTTGGACCACGTGGAAGCGATAGCG
GGCAAGAGGGGATTTGACTCGTCGACGGAGCAGACGATGGATCGGTTGCT
TAGCACTTTGTTGGTAGAGATGGATGGGCTTGGAAGTGGAGGTGAAGGAG
AAGGAGGAGGGAATCAGCTTATTGTCGTAGTGGCAGTGACGAATCATTTC
TCCATGCTGGATGACGCGATCTTGAGACCGGGGCGGCTGGGGTTGCATAT
GGAGATAGGGTTGCCTGATGTGGAAGGACGGACGGCTATTTACTCGCATC
ATCTTGCACGACTGCCTTTGTGCTTTGATGAGGCTGATGGGGTAGAAAGC
AAGGACTTTGCGTCTTTATCTAGCTTGGCATCACACATGGCGAGAATGAG
CGAGGGGTTATCGGGCGCGGATATACAGGGGGTCTGTCAAGAGGCGGCCT
TGCTGGGCTTGCGGGAGGATTTGAATCGGAAGCATTTGCTGCCTAGGCAC
ATCTTGCGGGCATTGGCGGTGCTACGAGGGGGCTGA
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Synonyms
Publications