NO09G00420.1, NO09G00420.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO09G00420.1
Unique Name	NO09G00420.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1905
Alignment location	chr9:186371..188638 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr9	genome	chr9:186371..188638 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO09G00420.1 vs.
Match: EWM27756.1 (ion channel [Nannochloropsis gaditana])

HSP 1 Score: 461.1 bits (1185), Expect = 5.700e-126
Identity = 341/637 (53.53%), Postives = 408/637 (64.05%), Query Frame = 0

Query:    1 MVLRPQRQRRATAVAAAAAEERDAAAAS---LAPSSVTGSSAAFKTPMSFPTAFPNHRAMECNAGKSIVDITVKPRCVAVTSGSSSNGGAGRIKVPPEPFVREDGIGTQSHTSSSSTSPASLVSSSSTSKKSQTPEFLVKLHRILLNEDKDIIYWDNGQIHVRNPTTLGQNVLHKYFRHSKYSSFQRQLNYFGFRKTQGKGKMSACTYTNVQLSGGNIKSLLNVKRKSSTGTGGKGEGEEGGEEDLSLLVEELEEGTDSDGGESSEGYTPVTVGQGLKRGAPVSFSASSALSMSSLSSGGSEGGLMARKRVRSSSSSSSCSLRGGGVVSLEESLAADEGLEGEEGGEEGSQGNTSAGALSGYSSSLSGQEEEEGEEEEDYGEDEDEDGHDAYHSFPPSQAAKHRQSHLHLHLPPHHHHQEQQQQQQQQQQLPLRQGGHRLSFTLAGGLRTSHACPNPSTSITLSSGSTTTTTATSSNSSSSSKSLKPLDVNALPT-FSTDVLPAPSPRGADDFFPSYLTAFDPLGDSASSPWAWAEPPVNGSLSSLSLETGCGMTSLNSLDEGHSNHSAFARDEDKGGASGGREGGREREVLASMPSAAAIAAAALCSPRGESAFLLSVEGGGGATDFWGGGASSAS 634
            MVLRPQRQRRATAVAAAA EE++A AAS   +AP+ V     +FK   +  TA  + R++   AGK   +  +K R V +  GS   G AGR K     +      G    T++++TS    V+S+S+SKKSQTPEFLVKLHRILLNEDKDIIYWDNGQIHVR+PT LGQ+VLHKYFRHSKYSSFQRQLNYFGFRKTQGKGKMSACTYTNVQLSGGNIKSLL+VKRKSST  G +G GE  GEED  L+ EE EE TDSD  E+++  +P +VG  LKRGA +SFS+ S       +SGG + G   RKR+        CS+  G  VSL+E+LAAD+  E  E   +GS+ NTSAGALSGY+SS+S   ++ G+E+E  GE E   G     SF P+  +                      QQ+    L   QG  RLS T+ GG+R     P                    S + +   ++K  D NALP  FS +VLPAPSPRGADD FPS LT+FD +GDSASSPWAWAEPPV+GSLSSLSLETG GMT L +L+EGHSN SAF  D++          G ERE  A MPSAAAIAAAALCSPRGE+AFLL +EG     DFWG   +S S
Sbjct:    1 MVLRPQRQRRATAVAAAAVEEKEAVAASFAPVAPAMVMTGQPSFKLSTTSATAISHMRSVSGTAGKLNSNSGMKARIVTLAPGS---GCAGRSKTSGGGYGGFQEGGAVPATATTTTS----VASTSSSKKSQTPEFLVKLHRILLNEDKDIIYWDNGQIHVRDPTVLGQSVLHKYFRHSKYSSFQRQLNYFGFRKTQGKGKMSACTYTNVQLSGGNIKSLLSVKRKSSTVVGKEG-GE--GEEDSPLVGEEAEEVTDSDD-EATDSLSPGSVG--LKRGASLSFSSIS-------TSGGHQQG---RKRM--------CSVTSGDCVSLQETLAADDFPEDRE---DGSEANTSAGALSGYASSMS-DGQDGGDEKEGDGEAEGAGG----ISFAPTGGS------------------ASDPQQRHALDLSRSQGRPRLSLTIPGGVRQGQLAP-------------------LSTAPAGPATVKSQDPNALPNFFSYNVLPAPSPRGADDLFPSCLTSFDTVGDSASSPWAWAEPPVSGSLSSLSLETGSGMTPLGTLEEGHSNQSAFNCDQEV-----KEREGLEREA-AQMPSAAAIAAAALCSPRGENAFLLQMEG-----DFWGNRVASTS 550

The following BLAST results are available for this feature:

BLAST of NO09G00420.1 vs.

BLAST of NO09G00420.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM27756.1	5.700e-126	53.53	ion channel [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO09G00420	NO09G00420	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO09G00420.1	NO09G00420.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO09G00420.1.cds1	NO09G00420.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO09G00420.1.cds2	NO09G00420.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr9:186371..188638-
coding sequence from alignment at chr9:186371..188638-

mRNA sequence

>NO09G00420.1 ID=NO09G00420.1|Name=NO09G00420.1|organism=Nannochloropsis oceanica|type=mRNA|length=1905bp
ATGGTCTTACGGCCCCAGCGCCAACGCCGCGCGACGGCTGTGGCGGCCGC
GGCAGCGGAGGAAAGGGACGCGGCCGCTGCCTCCCTCGCTCCGTCCTCAG
TGACGGGATCTAGTGCCGCATTCAAAACTCCTATGAGTTTCCCCACGGCC
TTCCCTAATCATCGCGCTATGGAATGTAACGCAGGCAAATCAATCGTAGA
TATCACTGTCAAACCCCGCTGTGTCGCCGTGACTTCGGGAAGCAGCAGCA
ATGGCGGCGCTGGGCGGATCAAAGTCCCTCCCGAACCCTTCGTGCGTGAG
GATGGGATCGGAACACAGAGTCATACAAGCTCCTCGTCCACCTCTCCCGC
CTCCTTGGTGTCCTCCTCCTCCACCTCCAAAAAGAGCCAGACACCCGAGT
TCCTGGTTAAGCTGCATCGAATTCTTCTAAACGAAGACAAGGATATCATC
TATTGGGACAACGGTCAAATCCACGTCCGCAATCCCACCACCTTGGGTCA
GAATGTCCTACACAAGTACTTCCGCCACAGCAAGTACAGCTCTTTCCAGC
GTCAGCTCAATTATTTTGGGTTCCGGAAGACTCAGGGCAAGGGGAAGATG
AGCGCATGCACGTACACGAACGTCCAGCTGTCGGGAGGGAACATTAAGAG
CCTGTTGAACGTCAAGAGGAAGAGCAGCACGGGCACGGGGGGCAAGGGCG
AGGGGGAGGAAGGTGGCGAGGAGGACCTGTCTTTGCTTGTGGAGGAGTTG
GAGGAAGGGACGGACTCCGACGGGGGAGAGTCTTCGGAAGGCTATACTCC
CGTGACCGTTGGTCAGGGCCTCAAGCGAGGGGCTCCCGTCTCCTTCTCTG
CATCCTCCGCCTTGTCCATGTCGTCCTTGTCTTCGGGTGGATCGGAGGGA
GGGTTAATGGCGAGGAAGCGTGTGCGGTCCTCTTCCTCGTCCTCGTCCTG
CTCCTTGCGGGGAGGGGGTGTCGTCTCCCTCGAAGAGAGTCTCGCGGCGG
ACGAGGGCTTGGAGGGGGAGGAGGGAGGGGAGGAGGGCAGCCAAGGCAAC
ACTTCTGCGGGTGCCCTCTCTGGCTACTCATCCTCCTTGTCTGGGCAAGA
AGAAGAGGAGGGGGAGGAGGAGGAGGACTATGGGGAGGACGAGGACGAGG
ACGGGCACGACGCCTATCACTCGTTTCCTCCCTCGCAAGCAGCCAAGCAT
CGTCAGTCGCACCTTCACCTCCACCTCCCACCCCACCACCACCACCAGGA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTACCCCTCCGACAGGGCG
GTCATCGCCTTTCCTTCACTCTCGCCGGCGGCCTCCGCACCTCCCATGCC
TGCCCGAACCCCTCCACTTCAATCACCCTCTCCTCGGGTAGCACCACTAC
CACCACAGCGACCAGCAGCAACAGCAGCAGCAGCAGCAAAAGCCTGAAGC
CGCTTGACGTCAATGCCCTGCCCACCTTCTCCACTGACGTGCTCCCCGCC
CCCTCTCCTCGCGGGGCGGACGATTTTTTCCCCTCCTACCTTACTGCCTT
CGACCCTCTAGGCGACTCGGCCTCCTCTCCCTGGGCGTGGGCAGAGCCCC
CTGTCAATGGGAGCCTCTCGTCGTTGTCTCTCGAAACAGGGTGCGGCATG
ACCTCTCTGAATTCCCTCGATGAGGGCCACAGCAACCACTCAGCTTTTGC
CCGGGACGAGGACAAGGGAGGGGCCAGTGGAGGAAGGGAAGGAGGGAGGG
AGAGGGAAGTTCTGGCGTCCATGCCGTCGGCAGCGGCGATTGCGGCCGCG
GCTCTGTGTAGCCCCCGGGGGGAGAGTGCGTTTTTGCTGAGTGTGGAAGG
AGGGGGAGGGGCGACCGATTTCTGGGGTGGGGGGGCCTCGTCTGCCTCTT
CGTGA

protein sequence of NO09G00420.1

>NO09G00420.1-protein ID=NO09G00420.1-protein|Name=NO09G00420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=635bp
MVLRPQRQRRATAVAAAAAEERDAAAASLAPSSVTGSSAAFKTPMSFPTA
FPNHRAMECNAGKSIVDITVKPRCVAVTSGSSSNGGAGRIKVPPEPFVRE
DGIGTQSHTSSSSTSPASLVSSSSTSKKSQTPEFLVKLHRILLNEDKDII
YWDNGQIHVRNPTTLGQNVLHKYFRHSKYSSFQRQLNYFGFRKTQGKGKM
SACTYTNVQLSGGNIKSLLNVKRKSSTGTGGKGEGEEGGEEDLSLLVEEL
EEGTDSDGGESSEGYTPVTVGQGLKRGAPVSFSASSALSMSSLSSGGSEG
GLMARKRVRSSSSSSSCSLRGGGVVSLEESLAADEGLEGEEGGEEGSQGN
TSAGALSGYSSSLSGQEEEEGEEEEDYGEDEDEDGHDAYHSFPPSQAAKH
RQSHLHLHLPPHHHHQEQQQQQQQQQQLPLRQGGHRLSFTLAGGLRTSHA
CPNPSTSITLSSGSTTTTTATSSNSSSSSKSLKPLDVNALPTFSTDVLPA
PSPRGADDFFPSYLTAFDPLGDSASSPWAWAEPPVNGSLSSLSLETGCGM
TSLNSLDEGHSNHSAFARDEDKGGASGGREGGREREVLASMPSAAAIAAA
ALCSPRGESAFLLSVEGGGGATDFWGGGASSASS*

mRNA from alignment at chr9:186371..188638-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO09G00420.1 ID=NO09G00420.1|Name=NO09G00420.1|organism=Nannochloropsis oceanica|type=mRNA|length=2268bp|location=Sequence derived from alignment at chr9:186371..188638- (Nannochloropsis oceanica)
ATGGTCTTACGGCCCCAGCGCCAACGCCGCGCGACGGCTGTGGCGGCCGC
GGCAGCGGAGGAAAGGGACGCGGCCGCTGCCTCCCTCGCTCCGTCCTCAG
TGACGGGATCTAGTGCCGCATTCAAAACTCCTATGAGTTTCCCCACGGCC
TTCCCTAATCATCGCGCTATGGAATGTAACGCAGGCAAATCAATCGTAGA
TATCACTGTCAAACCCCGCTGTGTCGCCGTGACTTCGGGAAGCAGCAGCA
ATGGCGGCGCTGGGCGGATCAAAGTCCCTCCCGAACCCTTCGTGCGTGAG
GATGGGATCGGAACACAGAGTCATACAAGCTCCTCGTCCACCTCTCCCGC
CTCCTTGGTGTCCTCCTCCTCCACCTCCAAAAAGAGCCAGACACCCGAGT
TCCTGGTTAAGCTGCATCGAATTCTTCTAAACGAAGACAAGGATATCATC
TATTGGGACAACGGTGAGTGAATCGAACAAGCCTCCCCAAAAAATGTGCC
GCCGCGGACAAAAATAGAAAAAGTCCAAGGGAGTGATCTGAAGACAGGGC
GTTTCCAATACTGACATCACATTGAGCGTGTGCGTGCGATTCCACATTTT
GAGGCCGGCATTAATTACCGCAAAAAATCGATCTATGGGATCTCTATTCG
CATGTTCCGGACTTCTTCTAAGCCAAGCAACATCTCTACCCTCCTCACAT
AATTCCCCTCCCCTAATTCATGTGTGACCCTGTGCTTTCTATGAAGCCGC
AGCTCTGCCGCCTTCTCTCATCAACCCCCCTACCTCCCCCACGCCCTTCC
TCCTCCCACCCCCATTCCTCTTGCAGGTCAAATCCACGTCCGCAATCCCA
CCACCTTGGGTCAGAATGTCCTACACAAGTACTTCCGCCACAGCAAGTAC
AGCTCTTTCCAGCGTCAGCTCAATTATTTTGGGTTCCGGAAGACTCAGGG
CAAGGGGAAGATGAGCGCATGCACGTACACGAACGTCCAGCTGTCGGGAG
GGAACATTAAGAGCCTGTTGAACGTCAAGAGGAAGAGCAGCACGGGCACG
GGGGGCAAGGGCGAGGGGGAGGAAGGTGGCGAGGAGGACCTGTCTTTGCT
TGTGGAGGAGTTGGAGGAAGGGACGGACTCCGACGGGGGAGAGTCTTCGG
AAGGCTATACTCCCGTGACCGTTGGTCAGGGCCTCAAGCGAGGGGCTCCC
GTCTCCTTCTCTGCATCCTCCGCCTTGTCCATGTCGTCCTTGTCTTCGGG
TGGATCGGAGGGAGGGTTAATGGCGAGGAAGCGTGTGCGGTCCTCTTCCT
CGTCCTCGTCCTGCTCCTTGCGGGGAGGGGGTGTCGTCTCCCTCGAAGAG
AGTCTCGCGGCGGACGAGGGCTTGGAGGGGGAGGAGGGAGGGGAGGAGGG
CAGCCAAGGCAACACTTCTGCGGGTGCCCTCTCTGGCTACTCATCCTCCT
TGTCTGGGCAAGAAGAAGAGGAGGGGGAGGAGGAGGAGGACTATGGGGAG
GACGAGGACGAGGACGGGCACGACGCCTATCACTCGTTTCCTCCCTCGCA
AGCAGCCAAGCATCGTCAGTCGCACCTTCACCTCCACCTCCCACCCCACC
ACCACCACCAGGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTACCC
CTCCGACAGGGCGGTCATCGCCTTTCCTTCACTCTCGCCGGCGGCCTCCG
CACCTCCCATGCCTGCCCGAACCCCTCCACTTCAATCACCCTCTCCTCGG
GTAGCACCACTACCACCACAGCGACCAGCAGCAACAGCAGCAGCAGCAGC
AAAAGCCTGAAGCCGCTTGACGTCAATGCCCTGCCCACCTTCTCCACTGA
CGTGCTCCCCGCCCCCTCTCCTCGCGGGGCGGACGATTTTTTCCCCTCCT
ACCTTACTGCCTTCGACCCTCTAGGCGACTCGGCCTCCTCTCCCTGGGCG
TGGGCAGAGCCCCCTGTCAATGGGAGCCTCTCGTCGTTGTCTCTCGAAAC
AGGGTGCGGCATGACCTCTCTGAATTCCCTCGATGAGGGCCACAGCAACC
ACTCAGCTTTTGCCCGGGACGAGGACAAGGGAGGGGCCAGTGGAGGAAGG
GAAGGAGGGAGGGAGAGGGAAGTTCTGGCGTCCATGCCGTCGGCAGCGGC
GATTGCGGCCGCGGCTCTGTGTAGCCCCCGGGGGGAGAGTGCGTTTTTGC
TGAGTGTGGAAGGAGGGGGAGGGGCGACCGATTTCTGGGGTGGGGGGGCC
TCGTCTGCCTCTTCGTGA

Coding sequence (CDS) from alignment at chr9:186371..188638-

>NO09G00420.1 ID=NO09G00420.1|Name=NO09G00420.1|organism=Nannochloropsis oceanica|type=CDS|length=1905bp|location=Sequence derived from alignment at chr9:186371..188638- (Nannochloropsis oceanica)
ATGGTCTTACGGCCCCAGCGCCAACGCCGCGCGACGGCTGTGGCGGCCGC
GGCAGCGGAGGAAAGGGACGCGGCCGCTGCCTCCCTCGCTCCGTCCTCAG
TGACGGGATCTAGTGCCGCATTCAAAACTCCTATGAGTTTCCCCACGGCC
TTCCCTAATCATCGCGCTATGGAATGTAACGCAGGCAAATCAATCGTAGA
TATCACTGTCAAACCCCGCTGTGTCGCCGTGACTTCGGGAAGCAGCAGCA
ATGGCGGCGCTGGGCGGATCAAAGTCCCTCCCGAACCCTTCGTGCGTGAG
GATGGGATCGGAACACAGAGTCATACAAGCTCCTCGTCCACCTCTCCCGC
CTCCTTGGTGTCCTCCTCCTCCACCTCCAAAAAGAGCCAGACACCCGAGT
TCCTGGTTAAGCTGCATCGAATTCTTCTAAACGAAGACAAGGATATCATC
TATTGGGACAACGGTCAAATCCACGTCCGCAATCCCACCACCTTGGGTCA
GAATGTCCTACACAAGTACTTCCGCCACAGCAAGTACAGCTCTTTCCAGC
GTCAGCTCAATTATTTTGGGTTCCGGAAGACTCAGGGCAAGGGGAAGATG
AGCGCATGCACGTACACGAACGTCCAGCTGTCGGGAGGGAACATTAAGAG
CCTGTTGAACGTCAAGAGGAAGAGCAGCACGGGCACGGGGGGCAAGGGCG
AGGGGGAGGAAGGTGGCGAGGAGGACCTGTCTTTGCTTGTGGAGGAGTTG
GAGGAAGGGACGGACTCCGACGGGGGAGAGTCTTCGGAAGGCTATACTCC
CGTGACCGTTGGTCAGGGCCTCAAGCGAGGGGCTCCCGTCTCCTTCTCTG
CATCCTCCGCCTTGTCCATGTCGTCCTTGTCTTCGGGTGGATCGGAGGGA
GGGTTAATGGCGAGGAAGCGTGTGCGGTCCTCTTCCTCGTCCTCGTCCTG
CTCCTTGCGGGGAGGGGGTGTCGTCTCCCTCGAAGAGAGTCTCGCGGCGG
ACGAGGGCTTGGAGGGGGAGGAGGGAGGGGAGGAGGGCAGCCAAGGCAAC
ACTTCTGCGGGTGCCCTCTCTGGCTACTCATCCTCCTTGTCTGGGCAAGA
AGAAGAGGAGGGGGAGGAGGAGGAGGACTATGGGGAGGACGAGGACGAGG
ACGGGCACGACGCCTATCACTCGTTTCCTCCCTCGCAAGCAGCCAAGCAT
CGTCAGTCGCACCTTCACCTCCACCTCCCACCCCACCACCACCACCAGGA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTACCCCTCCGACAGGGCG
GTCATCGCCTTTCCTTCACTCTCGCCGGCGGCCTCCGCACCTCCCATGCC
TGCCCGAACCCCTCCACTTCAATCACCCTCTCCTCGGGTAGCACCACTAC
CACCACAGCGACCAGCAGCAACAGCAGCAGCAGCAGCAAAAGCCTGAAGC
CGCTTGACGTCAATGCCCTGCCCACCTTCTCCACTGACGTGCTCCCCGCC
CCCTCTCCTCGCGGGGCGGACGATTTTTTCCCCTCCTACCTTACTGCCTT
CGACCCTCTAGGCGACTCGGCCTCCTCTCCCTGGGCGTGGGCAGAGCCCC
CTGTCAATGGGAGCCTCTCGTCGTTGTCTCTCGAAACAGGGTGCGGCATG
ACCTCTCTGAATTCCCTCGATGAGGGCCACAGCAACCACTCAGCTTTTGC
CCGGGACGAGGACAAGGGAGGGGCCAGTGGAGGAAGGGAAGGAGGGAGGG
AGAGGGAAGTTCTGGCGTCCATGCCGTCGGCAGCGGCGATTGCGGCCGCG
GCTCTGTGTAGCCCCCGGGGGGAGAGTGCGTTTTTGCTGAGTGTGGAAGG
AGGGGGAGGGGCGACCGATTTCTGGGGTGGGGGGGCCTCGTCTGCCTCTT
CGTGA

Synonyms

Publications