NO09G00400.1, NO09G00400.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G00400.1
Unique NameNO09G00400.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1158
Alignment locationchr9:179376..180931 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:179376..180931 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G00400.1 vs.
Match: XP_005854514.1 (nucleoside diphosphate-linked moiety x motif 6 [Nannochloropsis gaditana CCMP526]; XP_005855225.1 nucleoside diphosphate-linked moiety x motif 6 [Nannochloropsis gaditana CCMP526]; EKU21127.1 nucleoside diphosphate-linked moiety x motif 6 [Nannochloropsis gaditana CCMP526]; EKU21841.1 nucleoside diphosphate-linked moiety x motif 6 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 454.1 bits (1167), Expect = 4.200e-124
Identity = 234/318 (73.58%), Postives = 255/318 (80.19%), Query Frame = 0 
Query:   66 SRHEAGAAAAAVGGRRGGLLSTSMQAGSSQHQYQRGYATGGEGGENNNNAARKTYLGEPLELTPMPFNACMLDTDTMRVTDTSDFTTRMLVTVQQLRKEGKSSLWARVHALNGHLLGVLGTFGFKCHHCEPDTVVMNLWLQPGMENKVPPYATHLVGVAGFCMNKKDEVLLVKEGSKAVSGWKLPGGYVNPGEEFGAAAVREVEEETGVRSTFQGLLAMRHQHNLSFGVDDIYVVTHLAAETDELRLRSSEIEDARWVPFAQFQKEASHPILKTVAELMRGSVGVERTMDTAVIVEKEHPSILPNRPPYKLYHAPIPG 384
            SRH  G A        GG   T   AG    +     A  G+GG  + N   KT+LGEPLE+TPMPFNA MLDTD MRVTDTSDFTTR+LVTVQQLR+EG+SS+W RVHALNGHLLGVLGTFGFKCHHCEP++V+MNLWLQPG ENKVPPYATHLVGVAGFC NKK EVLLVKEGSK +SGWKLPGGY+NPGEEFGAAAVREVEEETGVRS+F+GLLA+RHQH  SFGVDDIYVVT L A TDELRL SSEI+DARWVP  QFQ EASHPIL+TVAEL RG  G        VIVE+EHPSILP RPPYKLYHAP+ G
Sbjct:   74 SRH-VGCAHGGSRKSTGGATITRYMAGMQPRR-----AFSGQGGGQDGN---KTFLGEPLEVTPMPFNAVMLDTDNMRVTDTSDFTTRLLVTVQQLRREGRSSMWVRVHALNGHLLGVLGTFGFKCHHCEPESVIMNLWLQPGKENKVPPYATHLVGVAGFCQNKKGEVLLVKEGSKNLSGWKLPGGYINPGEEFGAAAVREVEEETGVRSSFEGLLALRHQHQQSFGVDDIYVVTRLQALTDELRLCSSEIQDARWVPLKQFQDEASHPILRTVAELTRG-WGEGEGPVRGVIVEREHPSILPGRPPYKLYHAPLLG 381
The following BLAST results are available for this feature:
BLAST of NO09G00400.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854514.14.200e-12473.58nucleoside diphosphate-linked moiety x motif 6 [Na... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G00400NO09G00400Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G00400.1NO09G00400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G00400.1.cds1NO09G00400.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00400.1.cds2NO09G00400.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00400.1.cds3NO09G00400.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G00400.1 ID=NO09G00400.1|Name=NO09G00400.1|organism=Nannochloropsis oceanica|type=mRNA|length=1158bp
ATGCTGATGTTACGGGGTGTGAGTGGCTGCGCGGGCCGCCGTAATCTTTT
TGCGAAACGGAAAGCCTTGCCCTCCTCCATCTCCTCCCCCTCATCGACCT
CCCCCCTCCCTCTATTCTATGCCTCATGCTCCCGTTTTGCGTCAACCAGC
AGTTTGAGGCCCAGGACATGGGCGCTATGGAATGAAGGATCAGGATCACG
GCATGAGGCCGGAGCAGCAGCAGCGGCAGTAGGAGGAAGACGAGGTGGCT
TGTTATCCACCAGCATGCAGGCGGGCTCGTCCCAGCACCAGTACCAGCGT
GGTTACGCGACCGGGGGTGAAGGGGGCGAAAATAACAACAATGCTGCTCG
AAAGACTTATTTGGGGGAACCCTTGGAGTTGACGCCCATGCCTTTTAATG
CTTGCATGCTCGACACGGACACCATGCGGGTGACGGACACGAGTGACTTT
ACGACGCGGATGCTTGTCACAGTGCAGCAATTGCGCAAGGAGGGGAAGAG
CAGCTTGTGGGCACGGGTACATGCACTCAACGGTCATTTGCTTGGGGTCC
TTGGAACGTTTGGCTTCAAATGTCATCATTGTGAGCCGGATACAGTCGTG
ATGAATCTTTGGTTGCAGCCGGGGATGGAGAACAAGGTACCGCCTTATGC
GACGCACTTGGTTGGAGTAGCAGGATTTTGCATGAATAAGAAGGACGAGG
TGTTACTGGTCAAGGAAGGGAGCAAGGCCGTGAGCGGATGGAAGCTTCCA
GGAGGTTATGTGAATCCGGGCGAGGAATTCGGCGCTGCCGCCGTGAGGGA
GGTCGAGGAGGAGACAGGTGTCAGGTCCACGTTCCAAGGACTGCTGGCCA
TGCGGCACCAGCACAATCTTTCCTTCGGGGTTGACGACATTTATGTCGTC
ACGCACTTGGCCGCCGAAACGGACGAATTGCGACTGCGTTCGTCGGAGAT
AGAGGACGCCCGGTGGGTGCCGTTCGCGCAATTTCAAAAAGAGGCCTCCC
ACCCCATCTTGAAAACCGTGGCGGAGCTGATGAGAGGATCGGTGGGTGTG
GAACGGACGATGGATACTGCCGTGATCGTCGAGAAAGAGCATCCTTCGAT
TTTGCCGAACCGGCCGCCGTACAAGCTGTACCACGCGCCCATACCGGGAA
TGAAGTGA
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protein sequence of NO09G00400.1

>NO09G00400.1-protein ID=NO09G00400.1-protein|Name=NO09G00400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=386bp
MLMLRGVSGCAGRRNLFAKRKALPSSISSPSSTSPLPLFYASCSRFASTS
SLRPRTWALWNEGSGSRHEAGAAAAAVGGRRGGLLSTSMQAGSSQHQYQR
GYATGGEGGENNNNAARKTYLGEPLELTPMPFNACMLDTDTMRVTDTSDF
TTRMLVTVQQLRKEGKSSLWARVHALNGHLLGVLGTFGFKCHHCEPDTVV
MNLWLQPGMENKVPPYATHLVGVAGFCMNKKDEVLLVKEGSKAVSGWKLP
GGYVNPGEEFGAAAVREVEEETGVRSTFQGLLAMRHQHNLSFGVDDIYVV
THLAAETDELRLRSSEIEDARWVPFAQFQKEASHPILKTVAELMRGSVGV
ERTMDTAVIVEKEHPSILPNRPPYKLYHAPIPGMK*
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mRNA from alignment at chr9:179376..180931-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G00400.1 ID=NO09G00400.1|Name=NO09G00400.1|organism=Nannochloropsis oceanica|type=mRNA|length=1556bp|location=Sequence derived from alignment at chr9:179376..180931- (Nannochloropsis oceanica)
ATGCTGATGTTACGGGGTGTGAGTGGCTGCGCGGGCCGCCGTAATCTTTT
TGCGAAACGGAAAGCCTTGCCCTCCTCCATCTCCTCCCCCTCATCGACCT
CCCCCCTCCCTCTATTCTATGCCTCATGCTCCCGTTTTGCGTCAACCAGC
AGTTTGAGGCCCAGGACATGGGCGCTATGGAATGAAGGATCAGGATCACG
GCATGAGGCCGGAGCAGCAGCAGCGGCAGTAGGAGGAAGACGAGGTGGCT
TGTTATCCACCAGCATGCAGGCGGGCTCGTCCCAGCACCAGTACCAGCGT
GGTTACGCGACCGGGGGTGAAGGGGGCGAAAATAACAACAATGCTGCTCG
AAAGACTTATTTGGGGGAACCCTTGGAGTTGACGCCCATGCCTTTTAATG
CTTGCATGCTCGACACGGACACCATGCGGGTGACGGACACGAGTGACTTT
ACGACGCGGATGCTTGTCACAGTGCAGCAATTGCGCAAGGAGGGGAAGAG
CAGCTTGTGGGCACGGGTACATGCACTCAACGGTCATTTGCTTGGGGTCC
TTGGAACGTTTGGCTTCAAATGTCATCATTGTGAGCCGGATACAGTCGTG
ATGAATCTTTGGTTGCAGCCGGGGATGGAGAACAAGGTACCGCCTTATGC
GACGCACTTGGTTGGAGTAGCAGGTAAGCTCTCGCTTTGGACGTGGAGGA
AGGAAAGAGAGGGGGAAGGAGGGAGGGGGAAAGGGATGCGACGCACTTGG
TTGGAGTAGCAGGTAAGCTCTCGCTTTGGAGGGGGAAAGGGAGGGAGATG
AGAGAAGTCTTATAGTGCGCTGTTTTTGGGCGACTTCGAAATCCTCCTCA
TCCTCCTCCTCATCCTCCTCCCCCTCCTCAGCTGAACTTTTCCATCCTTT
GCAAACCTATCCCACATCGTAATTCGCACACTCACCTCCAGGATTTTGCA
TGAATAAGAAGGACGAGGTGTTACTGGTCAAGGAAGGGAGCAAGGCCGTG
AGCGGATGGAAGCTTCCAGGAGGTTATGTGAATGTGAGGGATTCGTACAG
CCACATTAATAGCTTGCTTGATTTATGACAGTGCCTTGTTCTTCGTACTT
CATCATCATAATATTTCCCCAACCATCCTCATCCTCCATCCCACCCTCCC
CTATCCCCTCCAGCCGGGCGAGGAATTCGGCGCTGCCGCCGTGAGGGAGG
TCGAGGAGGAGACAGGTGTCAGGTCCACGTTCCAAGGACTGCTGGCCATG
CGGCACCAGCACAATCTTTCCTTCGGGGTTGACGACATTTATGTCGTCAC
GCACTTGGCCGCCGAAACGGACGAATTGCGACTGCGTTCGTCGGAGATAG
AGGACGCCCGGTGGGTGCCGTTCGCGCAATTTCAAAAAGAGGCCTCCCAC
CCCATCTTGAAAACCGTGGCGGAGCTGATGAGAGGATCGGTGGGTGTGGA
ACGGACGATGGATACTGCCGTGATCGTCGAGAAAGAGCATCCTTCGATTT
TGCCGAACCGGCCGCCGTACAAGCTGTACCACGCGCCCATACCGGGAATG
AAGTGA
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Coding sequence (CDS) from alignment at chr9:179376..180931-

>NO09G00400.1 ID=NO09G00400.1|Name=NO09G00400.1|organism=Nannochloropsis oceanica|type=CDS|length=1158bp|location=Sequence derived from alignment at chr9:179376..180931- (Nannochloropsis oceanica)
ATGCTGATGTTACGGGGTGTGAGTGGCTGCGCGGGCCGCCGTAATCTTTT
TGCGAAACGGAAAGCCTTGCCCTCCTCCATCTCCTCCCCCTCATCGACCT
CCCCCCTCCCTCTATTCTATGCCTCATGCTCCCGTTTTGCGTCAACCAGC
AGTTTGAGGCCCAGGACATGGGCGCTATGGAATGAAGGATCAGGATCACG
GCATGAGGCCGGAGCAGCAGCAGCGGCAGTAGGAGGAAGACGAGGTGGCT
TGTTATCCACCAGCATGCAGGCGGGCTCGTCCCAGCACCAGTACCAGCGT
GGTTACGCGACCGGGGGTGAAGGGGGCGAAAATAACAACAATGCTGCTCG
AAAGACTTATTTGGGGGAACCCTTGGAGTTGACGCCCATGCCTTTTAATG
CTTGCATGCTCGACACGGACACCATGCGGGTGACGGACACGAGTGACTTT
ACGACGCGGATGCTTGTCACAGTGCAGCAATTGCGCAAGGAGGGGAAGAG
CAGCTTGTGGGCACGGGTACATGCACTCAACGGTCATTTGCTTGGGGTCC
TTGGAACGTTTGGCTTCAAATGTCATCATTGTGAGCCGGATACAGTCGTG
ATGAATCTTTGGTTGCAGCCGGGGATGGAGAACAAGGTACCGCCTTATGC
GACGCACTTGGTTGGAGTAGCAGGATTTTGCATGAATAAGAAGGACGAGG
TGTTACTGGTCAAGGAAGGGAGCAAGGCCGTGAGCGGATGGAAGCTTCCA
GGAGGTTATGTGAATCCGGGCGAGGAATTCGGCGCTGCCGCCGTGAGGGA
GGTCGAGGAGGAGACAGGTGTCAGGTCCACGTTCCAAGGACTGCTGGCCA
TGCGGCACCAGCACAATCTTTCCTTCGGGGTTGACGACATTTATGTCGTC
ACGCACTTGGCCGCCGAAACGGACGAATTGCGACTGCGTTCGTCGGAGAT
AGAGGACGCCCGGTGGGTGCCGTTCGCGCAATTTCAAAAAGAGGCCTCCC
ACCCCATCTTGAAAACCGTGGCGGAGCTGATGAGAGGATCGGTGGGTGTG
GAACGGACGATGGATACTGCCGTGATCGTCGAGAAAGAGCATCCTTCGAT
TTTGCCGAACCGGCCGCCGTACAAGCTGTACCACGCGCCCATACCGGGAA
TGAAGTGA
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Synonyms
Publications