NO09G00130.1, NO09G00130.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G00130.1
Unique NameNO09G00130.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length384
Alignment locationchr9:74696..75079 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:74696..75079 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G00130.1 vs.
Match: XP_005852475.1 (5-hydroxyisourate hydrolase, partial [Nannochloropsis gaditana CCMP526]; XP_005855242.1 5-hydroxyisourate hydrolase, partial [Nannochloropsis gaditana CCMP526]; EKU21118.1 5-hydroxyisourate hydrolase, partial [Nannochloropsis gaditana CCMP526]; EKU23357.1 5-hydroxyisourate hydrolase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 183.0 bits (463), Expect = 6.000e-43
Identity = 87/121 (71.90%), Postives = 98/121 (80.99%), Query Frame = 0 
Query:    7 KRCPITSHILDTTLGKPAQGVALHLEQKKAGQGDTASSQWVVLGHGHTNADGRVETLLPTSHVLQSGVYRITFDVAAYFRASNTKAFYPEVTIVFEVERPEEHYHVPLLINPYAYSTYRGS 128
            KR PITSH+LDTTLGKPAQG+ L LEQ+        ++ W +LG G TNADGRVE LLP+SH L  G+Y+ITFDVA YFRA NTK+FYP VTI FEVERPEEHYHVPLLINP+AYSTYRGS
Sbjct:   40 KRSPITSHVLDTTLGKPAQGMPLRLEQQGEHGIGNGNATWTLLGEGLTNADGRVEDLLPSSHTLSPGIYKITFDVAVYFRAINTKSFYPSVTIEFEVERPEEHYHVPLLINPFAYSTYRGS 160
The following BLAST results are available for this feature:
BLAST of NO09G00130.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852475.16.000e-4371.905-hydroxyisourate hydrolase, partial [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G00130NO09G00130Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G00130.1NO09G00130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G00130.1.cds1NO09G00130.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G00130.1 ID=NO09G00130.1|Name=NO09G00130.1|organism=Nannochloropsis oceanica|type=mRNA|length=384bp
ATGAGCACTGCCCCCAAAAAGCGTTGCCCAATTACCTCCCACATCCTTGA
CACCACCCTTGGCAAACCCGCCCAAGGCGTCGCCTTGCACCTCGAGCAAA
AAAAAGCAGGACAAGGAGACACCGCTTCCTCTCAATGGGTTGTGCTAGGG
CATGGTCACACAAACGCTGATGGGCGGGTGGAGACTTTATTACCCACCAG
CCATGTCTTGCAGTCGGGTGTGTATCGCATCACCTTCGACGTGGCCGCGT
ATTTCCGTGCGAGCAACACCAAGGCTTTTTACCCCGAGGTGACAATTGTA
TTTGAGGTGGAGAGGCCTGAAGAACATTATCATGTGCCCTTATTAATCAA
CCCGTATGCGTACTCCACGTATCGGGGGAGTTAG
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protein sequence of NO09G00130.1

>NO09G00130.1-protein ID=NO09G00130.1-protein|Name=NO09G00130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=128bp
MSTAPKKRCPITSHILDTTLGKPAQGVALHLEQKKAGQGDTASSQWVVLG
HGHTNADGRVETLLPTSHVLQSGVYRITFDVAAYFRASNTKAFYPEVTIV
FEVERPEEHYHVPLLINPYAYSTYRGS*
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mRNA from alignment at chr9:74696..75079-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G00130.1 ID=NO09G00130.1|Name=NO09G00130.1|organism=Nannochloropsis oceanica|type=mRNA|length=384bp|location=Sequence derived from alignment at chr9:74696..75079- (Nannochloropsis oceanica)
ATGAGCACTGCCCCCAAAAAGCGTTGCCCAATTACCTCCCACATCCTTGA
CACCACCCTTGGCAAACCCGCCCAAGGCGTCGCCTTGCACCTCGAGCAAA
AAAAAGCAGGACAAGGAGACACCGCTTCCTCTCAATGGGTTGTGCTAGGG
CATGGTCACACAAACGCTGATGGGCGGGTGGAGACTTTATTACCCACCAG
CCATGTCTTGCAGTCGGGTGTGTATCGCATCACCTTCGACGTGGCCGCGT
ATTTCCGTGCGAGCAACACCAAGGCTTTTTACCCCGAGGTGACAATTGTA
TTTGAGGTGGAGAGGCCTGAAGAACATTATCATGTGCCCTTATTAATCAA
CCCGTATGCGTACTCCACGTATCGGGGGAGTTAG
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Coding sequence (CDS) from alignment at chr9:74696..75079-

>NO09G00130.1 ID=NO09G00130.1|Name=NO09G00130.1|organism=Nannochloropsis oceanica|type=CDS|length=384bp|location=Sequence derived from alignment at chr9:74696..75079- (Nannochloropsis oceanica)
ATGAGCACTGCCCCCAAAAAGCGTTGCCCAATTACCTCCCACATCCTTGA
CACCACCCTTGGCAAACCCGCCCAAGGCGTCGCCTTGCACCTCGAGCAAA
AAAAAGCAGGACAAGGAGACACCGCTTCCTCTCAATGGGTTGTGCTAGGG
CATGGTCACACAAACGCTGATGGGCGGGTGGAGACTTTATTACCCACCAG
CCATGTCTTGCAGTCGGGTGTGTATCGCATCACCTTCGACGTGGCCGCGT
ATTTCCGTGCGAGCAACACCAAGGCTTTTTACCCCGAGGTGACAATTGTA
TTTGAGGTGGAGAGGCCTGAAGAACATTATCATGTGCCCTTATTAATCAA
CCCGTATGCGTACTCCACGTATCGGGGGAGTTAG
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Synonyms
Publications