NO08G04380.1, NO08G04380.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G04380.1
Unique NameNO08G04380.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1050
Alignment locationchr8:1283268..1284810 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1283268..1284810 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G04380.1 vs.
Match: XP_005853540.1 (hypothetical protein NGA_0432801 [Nannochloropsis gaditana CCMP526]; EKU22819.1 hypothetical protein NGA_0432801 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 228.4 bits (581), Expect = 2.900e-56
Identity = 124/260 (47.69%), Postives = 171/260 (65.77%), Query Frame = 0 
Query:   50 RTDSINTSATT-SSLPSKREASTDEGSCPS------------PPQLSLISSVQS----VVSQVQDYIHHMPRWQYRCMLTSIFLLALALIMVLLSSVLYGFNMHHPHVQVVDVQLLYPFPFADASGNIPVASTMLFSNRNPFPAVTKPTDIHIYALPSRSPASLLGTTSMPGFELAAHEQRRALNSTLSIRDIGSVDGGQALVKAVLEGENNFMYATSVGDITVKVLGLIPISRSYKNECTVLKKWGADSFTMSDCYGHF 293
            + D ++TS T+ SS  S R  +++  S  S            P Q+ L+SS+ S    VV  VQDY+HHMP+WQYR +L ++ +L ++L++VL  SVLYGFNM  PH++V +V+L  P P  D++G+IP+ ST+LFSN N F   +  + I IYALPSRSP SLL  T+     LA HE+  + +   +++D+GS+DGG A V AVLEG+N  +Y TS   ITVK LGLIP SR++K ECTVL+KWG +  T+SDCYG F
Sbjct:   46 KKDKLSTSNTSISSSNSTRRCNSEWHSAVSSHDGEDLKPPGTPSQIHLMSSMHSQVVNVVHHVQDYLHHMPKWQYRLLLCTVIILFVSLVLVLTVSVLYGFNMALPHIRVTNVRLALPPPHVDSAGHIPIVSTILFSNPNSFFTTSSLSPIRIYALPSRSPESLLALTAPRTIRLAGHEEGYSFDVNFTLKDVGSIDGGNATVAAVLEGQNCLLYTTSTSKITVKGLGLIPTSRNFKVECTVLRKWGENPLTLSDCYGRF 305
The following BLAST results are available for this feature:
BLAST of NO08G04380.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853540.12.900e-5647.69hypothetical protein NGA_0432801 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G04380NO08G04380Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G04380.1NO08G04380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G04380.1.cds1NO08G04380.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G04380.1.cds2NO08G04380.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G04380.1.cds3NO08G04380.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G04380.1.cds4NO08G04380.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G04380.1 ID=NO08G04380.1|Name=NO08G04380.1|organism=Nannochloropsis oceanica|type=mRNA|length=1050bp
AAAAATAAAGACAGGTTGGAGTCTCGCATTTCTAAGTCATGCTTTCCACT
GGCCTGCCCCCGGACCAAGACGTCAAGGAAGATCTGCCCCCGCCATCCAG
CCAACATGCCTACATCACTTTGTCAGACGGGAAAGAGGTCACAGAAGGCA
TTGAAAATGATTTCAAAGATGGGAGCCGTGATGGGAGGACCGACAGTATC
AATACAAGCGCCACAACCAGCAGCCTGCCGTCGAAAAGAGAAGCGAGCAC
GGACGAGGGTAGTTGCCCTTCACCCCCGCAATTATCCCTTATAAGCTCTG
TGCAAAGCGTGGTCTCGCAAGTCCAAGACTATATTCACCACATGCCAAGG
TGGCAGTACCGCTGCATGTTGACGTCCATCTTCCTTCTTGCACTCGCCCT
GATCATGGTCCTGCTCTCCTCTGTGCTTTATGGCTTCAACATGCACCATC
CCCACGTCCAAGTGGTCGACGTCCAACTCCTCTACCCCTTTCCTTTCGCC
GATGCAAGTGGCAACATCCCCGTGGCCTCGACCATGCTATTCTCAAATCG
CAACCCCTTTCCCGCCGTCACCAAGCCCACCGACATCCACATCTATGCCT
TGCCCTCACGCTCCCCCGCCTCCCTCCTCGGCACCACATCCATGCCCGGC
TTCGAGCTGGCAGCGCACGAGCAACGGCGCGCCTTGAACAGCACGCTGAG
CATTCGTGACATCGGGAGTGTGGATGGAGGACAAGCCTTAGTCAAGGCTG
TTTTGGAGGGCGAAAACAACTTCATGTATGCCACCAGCGTTGGTGACATT
ACCGTCAAGGTGCTGGGCCTGATTCCCATAAGTCGATCTTATAAAAATGA
ATGCACCGTGCTCAAGAAGTGGGGTGCTGACTCATTCACCATGAGTGACT
GCTACGGCCACTTTGCATAAGGGAGGGAAGAGAGGGAGGGCGAGGGAGGG
TGTCCTTATGCTCGTGTGAGCCAACGCTTCTAAAATAAAATTGGTGCGTG
GCACGGGGAGAAACCTCTCCAAATGCTAAGCAAGATAAATTGAGGAAATA
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protein sequence of NO08G04380.1

>NO08G04380.1-protein ID=NO08G04380.1-protein|Name=NO08G04380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=294bp
MLSTGLPPDQDVKEDLPPPSSQHAYITLSDGKEVTEGIENDFKDGSRDGR
TDSINTSATTSSLPSKREASTDEGSCPSPPQLSLISSVQSVVSQVQDYIH
HMPRWQYRCMLTSIFLLALALIMVLLSSVLYGFNMHHPHVQVVDVQLLYP
FPFADASGNIPVASTMLFSNRNPFPAVTKPTDIHIYALPSRSPASLLGTT
SMPGFELAAHEQRRALNSTLSIRDIGSVDGGQALVKAVLEGENNFMYATS
VGDITVKVLGLIPISRSYKNECTVLKKWGADSFTMSDCYGHFA*
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mRNA from alignment at chr8:1283268..1284810-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G04380.1 ID=NO08G04380.1|Name=NO08G04380.1|organism=Nannochloropsis oceanica|type=mRNA|length=1543bp|location=Sequence derived from alignment at chr8:1283268..1284810- (Nannochloropsis oceanica)
AAAAATAAAGACAGGTTGGAGTCTCGCATTTCTAAGTCATGCTTTCCACT
GGCCTGCCCCCGGACCAAGACGTCAAGGAAGATCTGCCCCCGCCATCCAG
CCAACATGCCTACATCACTTTGTCAGACGGGAAAGAGGTCACAGAAGGCA
TTGAAAATGATTTCAAAGATGGGAGCCGTGATGGGAGGACCGACAGTATC
AATACAAGCGCCACAACCAGCAGCCTGCCGTCGAAAAGAGAAGCGAGCAC
GGACGAGGGTAGTTGCCCTTCACCCCCGCAATTATCCCTTATAAGCTCTG
TGCAAAGCGTGGTCTCGCAAGTCCAAGACTATATTCACCACATGTAGGTT
TTGCTAGGGTTTGTAATGATTTATTACCCGGGTACGAATATCTGAGGTCG
ACGTACATGTGCCCACCCTGCCTCCCTCCTTCCCCCCATCTCTGCCTCCC
TGTCTTCCTCCCTTTACATCCTGCCCCAGGCCAAGGTGGCAGTACCGCTG
CATGTTGACGTCCATCTTCCTTCTTGCACTCGCCCTGATCATGGTCCTGC
TCTCCTCTGTGCTTTATGGCTTCAACATGCACCATCCCCACGTCCAAGTG
GTGAGGGAGAGGGGAAGGGGGGAACGGAGGAAGGAAGAGACTGGAATGAC
GATAGCGTGGTTGGTTTTAGCGGTGCTTAATTAATTTCCCTACCTTCTCC
GACTGCCTGGCTAGTCATTGCCCTTACCTCTATCTCCTCCCCTTTTCACT
CAACAATCCCTTCCTACCACCTTAAAATAGGTCGACGTCCAACTCCTCTA
CCCCTTTCCTTTCGCCGATGCAAGTGGCAACATCCCCGTGGCCTCGACCA
TGCTATTCTCAAATCGCAACCCCTTTCCCGCCGTCACCAAGCCCACCGAC
ATCCACATCTATGCCTTGCCCTCACGCTCCCCCGCCTCCCTCCTCGGCAC
CACATCCATGCCCGGCTTCGAGCTGGCAGCGCACGAGCAACGGCGCGCCT
TGAACAGCACGCTGAGCATTCGTGACATCGGGAGTGTGGATGGAGGACAA
GCCTTAGTCAAGGCTGTTTTGGAGGTGAGTTGTGGAACTACCTCCTGTTT
CCAGGTTCCTTTCCTCTCCGCCTTCCATTCCGACATCCTGTCTTTGTAGC
ACACCATTTTCAGATGCTATGCCTTAATGTCATCAACCGCTCTTGAGAAT
AGAAATAACACCTCCCTCCCTCTCTTCCTTGTTACCTTCCGCTCCTCCCA
GGGCGAAAACAACTTCATGTATGCCACCAGCGTTGGTGACATTACCGTCA
AGGTGCTGGGCCTGATTCCCATAAGTCGATCTTATAAAAATGAATGCACC
GTGCTCAAGAAGTGGGGTGCTGACTCATTCACCATGAGTGACTGCTACGG
CCACTTTGCATAAGGGAGGGAAGAGAGGGAGGGCGAGGGAGGGTGTCCTT
ATGCTCGTGTGAGCCAACGCTTCTAAAATAAAATTGGTGCGTGGCACGGG
GAGAAACCTCTCCAAATGCTAAGCAAGATAAATTGAGGAAATA
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Coding sequence (CDS) from alignment at chr8:1283268..1284810-

>NO08G04380.1 ID=NO08G04380.1|Name=NO08G04380.1|organism=Nannochloropsis oceanica|type=CDS|length=882bp|location=Sequence derived from alignment at chr8:1283268..1284810- (Nannochloropsis oceanica)
ATGCTTTCCACTGGCCTGCCCCCGGACCAAGACGTCAAGGAAGATCTGCC
CCCGCCATCCAGCCAACATGCCTACATCACTTTGTCAGACGGGAAAGAGG
TCACAGAAGGCATTGAAAATGATTTCAAAGATGGGAGCCGTGATGGGAGG
ACCGACAGTATCAATACAAGCGCCACAACCAGCAGCCTGCCGTCGAAAAG
AGAAGCGAGCACGGACGAGGGTAGTTGCCCTTCACCCCCGCAATTATCCC
TTATAAGCTCTGTGCAAAGCGTGGTCTCGCAAGTCCAAGACTATATTCAC
CACATGCCAAGGTGGCAGTACCGCTGCATGTTGACGTCCATCTTCCTTCT
TGCACTCGCCCTGATCATGGTCCTGCTCTCCTCTGTGCTTTATGGCTTCA
ACATGCACCATCCCCACGTCCAAGTGGTCGACGTCCAACTCCTCTACCCC
TTTCCTTTCGCCGATGCAAGTGGCAACATCCCCGTGGCCTCGACCATGCT
ATTCTCAAATCGCAACCCCTTTCCCGCCGTCACCAAGCCCACCGACATCC
ACATCTATGCCTTGCCCTCACGCTCCCCCGCCTCCCTCCTCGGCACCACA
TCCATGCCCGGCTTCGAGCTGGCAGCGCACGAGCAACGGCGCGCCTTGAA
CAGCACGCTGAGCATTCGTGACATCGGGAGTGTGGATGGAGGACAAGCCT
TAGTCAAGGCTGTTTTGGAGGGCGAAAACAACTTCATGTATGCCACCAGC
GTTGGTGACATTACCGTCAAGGTGCTGGGCCTGATTCCCATAAGTCGATC
TTATAAAAATGAATGCACCGTGCTCAAGAAGTGGGGTGCTGACTCATTCA
CCATGAGTGACTGCTACGGCCACTTTGCATAA
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Synonyms
Publications