NO08G04250.1, NO08G04250.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO08G04250.1
Unique Name	NO08G04250.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1958
Alignment location	chr8:1230550..1232952 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr8	genome	chr8:1230550..1232952 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO08G04250.1 vs.
Match: EWM26891.1 (hypothetical protein Naga_100690g1 [Nannochloropsis gaditana])

HSP 1 Score: 126.3 bits (316), Expect = 2.700e-25
Identity = 157/321 (48.91%), Postives = 199/321 (61.99%), Query Frame = 0

Query:    1 MKAQELQLLGNILAFLKAKGFDKTAAVLLKEGKGKGALSLTVGKQDLLALYVKAVGGSAAADLGLTSSSSSSSSSESDGESESESEGEGDKTKQAVAGPVTPKDKKKGANTPVTTPAAASSSSSSSSSSSSSSSSSSSSSSSSSESESEDEEKKTK---PNATGPAKKNSSAKTAADAEESDSSSSSSSSDSDKEDEEEETTTTTKKKA---------PAAKRKATSPPATAASSSSSSSSSESDDSEEEEEEVKEKKASTPKKPAAVQVAANKKRKAAADALSSSSSSSSSEDGDDESSSSDEEEEEEEEEVKGKVEGNK 310
            MK  ELQLLG++LAFLK+KGF KTAA L+KEGKGKGALSL+ G +DLL LYVKAVG     +     + SSSS  +SD  S SESE +G+  K+ V GP+TP  KK+ A   +TTPAAA       SSSSSSSSSSSSSSSSSSESE+E++ K  K        P++ N +AK A        SSSSSSS  ++E+EE ETT  TKK +         PA+K   +   A+++SSSSSSSS ES    E   E +EK A+    PA  +   + KRKAA  + SSSS SSS+E+ ++E     EEEEE + +     +G K
Sbjct:    1 MKIPELQLLGDVLAFLKSKGFVKTAATLIKEGKGKGALSLSTGSRDLLDLYVKAVGVVPRPE-----TPSSSSDDDSDSSSSSESEEKGEARKRDVKGPITPALKKRQAAAALTTPAAA-------SSSSSSSSSSSSSSSSSSESENEEDRKSHKELSEKQNTPSQMNGTAKGA--------SSSSSSSSEEEEEEEAETTIPTKKLSNTAHSTRLRPASKPLPSKTEASSSSSSSSSSSGESSSESESASEEEEKAAA----PATKKSLPSHKRKAADMSSSSSSDSSSNEEEEEEGK---EEEEERKRKNSPPAKGGK 294

The following BLAST results are available for this feature:

BLAST of NO08G04250.1 vs.

BLAST of NO08G04250.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM26891.1	2.700e-25	48.91	hypothetical protein Naga_100690g1 [Nannochloropsi...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO08G04250	NO08G04250	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO08G04250.1	NO08G04250.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO08G04250.1.cds1	NO08G04250.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G04250.1.cds2	NO08G04250.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G04250.1.cds3	NO08G04250.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G04250.1.cds4	NO08G04250.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr8:1230550..1232952-
coding sequence from alignment at chr8:1230550..1232952-

mRNA sequence

>NO08G04250.1 ID=NO08G04250.1|Name=NO08G04250.1|organism=Nannochloropsis oceanica|type=mRNA|length=1958bp
ACAGGCAAGTAAAAGCCATTGGCACATCTGTCAATAAAGTAGCCAGAGCA
TCAGACCGCCGTGCAACAAGCAACGCCATGAAGGCCCAAGAGCTCCAGCT
GCTGGGGAATATCCTGGCCTTTCTCAAGGCCAAGGGTTTCGACAAAACGG
CCGCCGTGCTTTTGAAGGAAGGCAAGGGAAAGGGGGCCTTATCCCTGACT
GTGGGAAAGCAAGACTTGCTTGCTTTGTATGTCAAGGCGGTGGGCGGGTC
TGCGGCTGCTGACTTGGGGTTAACCTCCTCCTCATCATCATCATCGTCGA
GCGAAAGTGACGGTGAGAGTGAGAGTGAGAGCGAAGGTGAAGGAGATAAG
ACGAAGCAGGCCGTGGCAGGGCCTGTCACGCCCAAGGATAAGAAGAAGGG
GGCTAACACACCTGTCACCACACCTGCCGCCGCGTCTTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCTCCTCTTCCTCCTCCTCC
TCCTCTAGTGAGAGTGAGAGCGAGGACGAAGAGAAAAAGACCAAGCCGAA
TGCGACTGGTCCTGCGAAAAAAAACAGTTCTGCCAAGACTGCTGCTGATG
CCGAGGAGAGTGACTCGTCTTCCTCTTCCTCCTCCAGTGACAGCGATAAG
GAGGACGAGGAGGAGGAGACGACGACGACAACGAAAAAAAAGGCACCTGC
GGCCAAGCGCAAAGCAACTTCTCCTCCTGCTACTGCTGCCTCATCTTCAT
CCTCCTCATCATCAAGCGAGAGTGACGACAGCGAGGAGGAGGAGGAAGAG
GTCAAGGAGAAGAAGGCCTCCACTCCCAAGAAGCCCGCAGCGGTGCAAGT
CGCCGCCAATAAAAAACGAAAGGCCGCAGCTGATGCGCTCTCCTCCTCTT
CCTCCTCCTCGTCGTCGGAGGATGGCGATGACGAGTCCAGTTCCAGCGAT
GAGGAGGAGGAGGAGGAAGAGGAGGAGGTGAAGGGGAAAGTGGAGGGAAA
TAAGACGACGAAAACGAAAGCTGCTGCGCCTAATAAGAAGGCCAAGGTCG
CGAAAAGCAAAAGCAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGT
AGTAGCAGTTGTAGCAGTAGTAGTAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCGAGAGTGACAGCGAGAGCGAGGACGAGGAGATGGTCGCCG
CCCGCAAGGCCGCTGCTGAAGAGGATCGACGACGGAAGTCGGTGGCTGCG
GCCATGGCATGGCAGGCAGCCCAGGATGAGAAGGAGCAGCAGCTGCAGAG
CCCCGGCGGAGGCAACGGCAGCAACAGCGGCGGCAAGGGGGGAGGAGGGA
GGGGGGAGAGGGCGCCGGGGGAGGCGTTCAGGCGGGTGGATGACGTGTAT
TGGGGTGGGCAGATCAAGGACGAGCGGTTGAAGGATAACTCTTACGCTGG
CACGTTCGGCAGCGGTGGATATGGCGCGAAAGCCAGCGAAAAGTTAATGA
CGGTACGGGGGAAAGATTTCCGGCACGAGAAGACGAAGAAAAAGAGAGGT
AACTACAGAGGGGGTGCCATCTCCCTAGCGAGTCACTCGATTAAGTACGA
CTATGGCTCAGATGAGTAGGGAGGGAGGGAGTGAGGGAGGACTTGAGAGA
GGGAGGACGGGAGGGGTCCGGGTGGGGTGTGTAGTGTGTACTTGTGTGAT
GGGTTGAAGAAAAAAGAGAGAGGAAAAGAAGAGAGAGGGGAAAAGGTGGA
GTGGAGGAGTAGGAGGAGGAGGAGGAGGACGACGAGGAGAACGACTTTGT
ATCGGTGGAGGGGGGTGGGGGGAAAGAGGGGGGAAGCAAGACATTAGGCA
AAGAGGCAGGCGAAAGGGAGGAAGGGAGGGAGGGAAGGAGAGAGGGAAAC
GAAACAAAGAACCGAACCCATATATTTGACTAAATGGCTCTACTACATTT
CATCTTCT

protein sequence of NO08G04250.1

>NO08G04250.1-protein ID=NO08G04250.1-protein|Name=NO08G04250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=514bp
MKAQELQLLGNILAFLKAKGFDKTAAVLLKEGKGKGALSLTVGKQDLLAL
YVKAVGGSAAADLGLTSSSSSSSSSESDGESESESEGEGDKTKQAVAGPV
TPKDKKKGANTPVTTPAAASSSSSSSSSSSSSSSSSSSSSSSSSESESED
EEKKTKPNATGPAKKNSSAKTAADAEESDSSSSSSSSDSDKEDEEEETTT
TTKKKAPAAKRKATSPPATAASSSSSSSSSESDDSEEEEEEVKEKKASTP
KKPAAVQVAANKKRKAAADALSSSSSSSSSEDGDDESSSSDEEEEEEEEE
VKGKVEGNKTTKTKAAAPNKKAKVAKSKSSSSSSSSSSSSSSSSCSSSSS
SSSSSSSSSSSESDSESEDEEMVAARKAAAEEDRRRKSVAAAMAWQAAQD
EKEQQLQSPGGGNGSNSGGKGGGGRGERAPGEAFRRVDDVYWGGQIKDER
LKDNSYAGTFGSGGYGAKASEKLMTVRGKDFRHEKTKKKRGNYRGGAISL
ASHSIKYDYGSDE*

mRNA from alignment at chr8:1230550..1232952-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO08G04250.1 ID=NO08G04250.1|Name=NO08G04250.1|organism=Nannochloropsis oceanica|type=mRNA|length=2403bp|location=Sequence derived from alignment at chr8:1230550..1232952- (Nannochloropsis oceanica)
ACAGGCAAGTAAAAGCCATTGGCACATCTGTCAATAAAGTAGCCAGAGCA
TCAGACCGCCGTGCAACAAGCAACGCCATGAAGGCCCAAGAGCTCCAGCT
GCTGGGGAATATCCTGGCCTTTCTCAAGGTATGCATGCAGTGTTTGCTGT
ATATTACATGTAGCTCTATGCAGATGTGGGCTGTATGCGCGGTATTACTG
GCCTCAAGTAGATGCACCATCGGTGGATACACCATCCCACGCCATTCTTC
CCTCCACTCCCCATCCTACACACAGGCCAAGGGTTTCGACAAAACGGCCG
CCGTGCTTTTGAAGGAAGGCAAGGGAAAGGGGGCCTTATCCCTGACTGTG
GGAAAGCAAGACTTGCTTGCTTTGTATGTCAAGGCGGTGGGCGGGTCTGC
GGCTGCTGACTTGGGGTTAACCTCCTCCTCATCATCATCATCGTCGAGCG
AAAGTGACGGTGAGAGTGAGAGTGAGAGCGAAGGTGAAGGAGATAAGACG
AAGCAGGCCGTGGCAGGGCCTGTCACGCCCAAGGATAAGAAGAAGGGGGC
TAACACACCTGTCACCACACCTGCCGCCGCGTCTTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCTTCCTCCTCCTCTTCCTCCTCCTCCTCC
TCTAGTGAGAGTGAGAGCGAGGACGAAGAGAAAAAGACCAAGCCGAATGC
GACTGGTCCTGCGAAAAAAAACAGTTCTGCCAAGACTGCTGCTGATGCCG
AGGAGAGTGACTCGTCTTCCTCTTCCTCCTCCAGTGACAGCGATAAGGAG
GACGAGGAGGAGGAGACGACGACGACAACGAAAAAAAAGGCACCTGCGGC
CAAGCGCAAAGCAACTTCTCCTCCTGCTACTGCTGCCTCATCTTCATCCT
CCTCATCATCAAGCGAGAGTGACGACAGCGAGGAGGAGGAGGAAGAGGTC
AAGGAGAAGAAGGCCTCCACTCCCAAGAAGCCCGCAGCGGTGCAAGTCGC
CGCCAATAAAAAACGAAAGGCCGCAGCTGATGCGCTCTCCTCCTCTTCCT
CCTCCTCGTCGTCGGAGGATGGCGATGACGAGTCCAGTTCCAGCGATGAG
GAGGAGGAGGAGGAAGAGGAGGAGGTGAAGGGGAAAGTGGAGGGAAATAA
GACGACGAAAACGAAAGCTGCTGCGCCTAATAAGAAGGCCAAGGTCGCGA
AAAGCAAAAGCAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGT
AGCAGTTGTAGCAGTAGTAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCGAGAGTGACAGGTATTGAATGTACCCCCCCCTTCTCTCCTGCC
ATCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
GCTCCCTCCCCTAAGCATCCTTTGCTCCCTTCATCTCCTCTCTGAGTCCC
CGTGCCCTACCCTCCTCCTATCCCCTCCCCCTCAAACACCCACCAGCGAG
AGCGAGGACGAGGAGATGGTCGCCGCCCGCAAGGCCGCTGCTGAAGAGGA
TCGACGACGGAAGTCGGTGGCTGCGGCCATGGCATGGCAGGCAGCCCAGG
ATGAGAAGGAGCAGCAGCTGCAGAGCCCCGGCGGAGGCAACGGCAGCAAC
AGCGGCGGCAAGGGGGGAGGAGGGAGGGGGGAGAGGGCGCCGGGGGAGGC
GTTCAGGCGGGTGGATGACGTGTATTGGGGTGGGCAGATCAAGGACGAGC
GGTTGAAGGATAACTCTTGTGAGTAGGGAGGGAGGAAGGAAGGACTGTGG
GTTTTAAGTGGCTTTCGTTCGAAGCTCGTGACACTAGGAAATGATGGCAC
TCACCTTCCCTCCCTCCTTCCCCCCCTTCCTCCTTCAGACGCTGGCACGT
TCGGCAGCGGTGGATATGGCGCGAAAGCCAGCGAAAAGTTAATGACGGTA
CGGGGGAAAGATTTCCGGCACGAGAAGACGAAGAAAAAGAGAGGTAACTA
CAGAGGGGGTGCCATCTCCCTAGCGAGTCACTCGATTAAGTACGACTATG
GCTCAGATGAGTAGGGAGGGAGGGAGTGAGGGAGGACTTGAGAGAGGGAG
GACGGGAGGGGTCCGGGTGGGGTGTGTAGTGTGTACTTGTGTGATGGGTT
GAAGAAAAAAGAGAGAGGAAAAGAAGAGAGAGGGGAAAAGGTGGAGTGGA
GGAGTAGGAGGAGGAGGAGGAGGACGACGAGGAGAACGACTTTGTATCGG
TGGAGGGGGGTGGGGGGAAAGAGGGGGGAAGCAAGACATTAGGCAAAGAG
GCAGGCGAAAGGGAGGAAGGGAGGGAGGGAAGGAGAGAGGGAAACGAAAC
AAAGAACCGAACCCATATATTTGACTAAATGGCTCTACTACATTTCATCT
TCT

Coding sequence (CDS) from alignment at chr8:1230550..1232952-

>NO08G04250.1 ID=NO08G04250.1|Name=NO08G04250.1|organism=Nannochloropsis oceanica|type=CDS|length=1542bp|location=Sequence derived from alignment at chr8:1230550..1232952- (Nannochloropsis oceanica)
ATGAAGGCCCAAGAGCTCCAGCTGCTGGGGAATATCCTGGCCTTTCTCAA
GGCCAAGGGTTTCGACAAAACGGCCGCCGTGCTTTTGAAGGAAGGCAAGG
GAAAGGGGGCCTTATCCCTGACTGTGGGAAAGCAAGACTTGCTTGCTTTG
TATGTCAAGGCGGTGGGCGGGTCTGCGGCTGCTGACTTGGGGTTAACCTC
CTCCTCATCATCATCATCGTCGAGCGAAAGTGACGGTGAGAGTGAGAGTG
AGAGCGAAGGTGAAGGAGATAAGACGAAGCAGGCCGTGGCAGGGCCTGTC
ACGCCCAAGGATAAGAAGAAGGGGGCTAACACACCTGTCACCACACCTGC
CGCCGCGTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTT
CCTCCTCCTCTTCCTCCTCCTCCTCCTCTAGTGAGAGTGAGAGCGAGGAC
GAAGAGAAAAAGACCAAGCCGAATGCGACTGGTCCTGCGAAAAAAAACAG
TTCTGCCAAGACTGCTGCTGATGCCGAGGAGAGTGACTCGTCTTCCTCTT
CCTCCTCCAGTGACAGCGATAAGGAGGACGAGGAGGAGGAGACGACGACG
ACAACGAAAAAAAAGGCACCTGCGGCCAAGCGCAAAGCAACTTCTCCTCC
TGCTACTGCTGCCTCATCTTCATCCTCCTCATCATCAAGCGAGAGTGACG
ACAGCGAGGAGGAGGAGGAAGAGGTCAAGGAGAAGAAGGCCTCCACTCCC
AAGAAGCCCGCAGCGGTGCAAGTCGCCGCCAATAAAAAACGAAAGGCCGC
AGCTGATGCGCTCTCCTCCTCTTCCTCCTCCTCGTCGTCGGAGGATGGCG
ATGACGAGTCCAGTTCCAGCGATGAGGAGGAGGAGGAGGAAGAGGAGGAG
GTGAAGGGGAAAGTGGAGGGAAATAAGACGACGAAAACGAAAGCTGCTGC
GCCTAATAAGAAGGCCAAGGTCGCGAAAAGCAAAAGCAGTAGTAGTAGTA
GTAGTAGTAGTAGTAGTAGTAGTAGTAGCAGTTGTAGCAGTAGTAGTAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGAGAGTGACAGCGAGAG
CGAGGACGAGGAGATGGTCGCCGCCCGCAAGGCCGCTGCTGAAGAGGATC
GACGACGGAAGTCGGTGGCTGCGGCCATGGCATGGCAGGCAGCCCAGGAT
GAGAAGGAGCAGCAGCTGCAGAGCCCCGGCGGAGGCAACGGCAGCAACAG
CGGCGGCAAGGGGGGAGGAGGGAGGGGGGAGAGGGCGCCGGGGGAGGCGT
TCAGGCGGGTGGATGACGTGTATTGGGGTGGGCAGATCAAGGACGAGCGG
TTGAAGGATAACTCTTACGCTGGCACGTTCGGCAGCGGTGGATATGGCGC
GAAAGCCAGCGAAAAGTTAATGACGGTACGGGGGAAAGATTTCCGGCACG
AGAAGACGAAGAAAAAGAGAGGTAACTACAGAGGGGGTGCCATCTCCCTA
GCGAGTCACTCGATTAAGTACGACTATGGCTCAGATGAGTAG

Synonyms

Publications