NO08G04150.2, NO08G04150.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G04150.2
Unique NameNO08G04150.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1414
Alignment locationchr8:1195289..1197228 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1195289..1197228 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G04150.2 vs.
Match: XP_005853913.1 (hypothetical protein NGA_0460801 [Nannochloropsis gaditana CCMP526]; EKU22448.1 hypothetical protein NGA_0460801 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 364.8 bits (935), Expect = 2.700e-97
Identity = 163/257 (63.42%), Postives = 211/257 (82.10%), Query Frame = 0 
Query:   53 SSSDSIPKLKEEIKALQQKFDVLQRRFWLEPLEPIWQYRGKFYLGKTKDVEDKDQVTPFLLANFVDASNKTLYRRRIYIDLGIKDFNSSLCWMMQNYPIKFDAMYGFECERDMTNVATLRDPINRCISETAAE-KMGYTTEGTMDTLKVYHNFIGLDEDLETSPQTRGLSQFLKDIDIQEDDFVVLKMDVEGIEFSLLERMMANGTYKLIDEIFVEIHYRHPDMQPFGWDIFEHSLSDAQALFTKARDMGIYIHPWP 309
            SS  S   L E ++A+++   VLQ+RFW EPLEPIWQYRGK+YLGKT D+EDKDQVTPF LANFV+AS+  +Y+R+IYIDLGIKDF SSLCW+MQNYP+KFDA++GFEC  D++NVA L   I+ C+  TAA+ K GYT EG  + L +Y+N+IG DE+  T P TRGLSQ +KD++I++DD+VV+KMDVE +E++LL++++A+GTYKLIDE+FVEIHY HP+M  FGW +F  S +DAQALFTKARD+G+YIHPWP
Sbjct:   51 SSVKSSQSLYERMQAVEENMKVLQKRFWQEPLEPIWQYRGKYYLGKTNDIEDKDQVTPFFLANFVNASDPAVYKRKIYIDLGIKDFYSSLCWIMQNYPVKFDAIHGFECASDLSNVAALSSQIDACVRGTAADLKQGYTPEGVKEILHIYYNYIGTDENPATQPPTRGLSQVMKDLNIEKDDYVVVKMDVEEMEYALLDKIIADGTYKLIDEMFVEIHYNHPEMHKFGWQMFHKSRNDAQALFTKARDVGMYIHPWP 307
The following BLAST results are available for this feature:
BLAST of NO08G04150.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853913.12.700e-9763.42hypothetical protein NGA_0460801 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G04150NO08G04150Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G04150.2NO08G04150.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G04150.2.cds1NO08G04150.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G04150.2.cds2NO08G04150.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G04150.2.cds3NO08G04150.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G04150.2.cds4NO08G04150.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G04150.2 ID=NO08G04150.2|Name=NO08G04150.2|organism=Nannochloropsis oceanica|type=mRNA|length=1414bp
AGAAAATCGTATCAGACAGGCTACAACGGATATTACTTGATACATGAAAT
TTTATAGAGCTTTGAAACATAGCAAGCCCAAACTTTGGTGGCTGTCGAAC
ATGCTGTTTGGCGGTATACTTCTGGGATATGTTCTATACATGAAATGTGG
CTACATATTCCAGAGCAACAGCAGCCTTGGTGATCCAGTTCTCGCCATTT
CGTCAAGCGACTCAATACCAAAGCTTAAAGAAGAAATTAAGGCACTTCAA
CAGAAGTTTGATGTTCTCCAAAGAAGGTTTTGGCTGGAACCCCTCGAGCC
TATTTGGCAGTACCGCGGGAAGTTTTACCTGGGAAAGACAAAAGATGTCG
AAGACAAGGACCAGGTGACACCGTTTCTGCTGGCCAATTTCGTCGACGCT
TCGAACAAGACATTATACAGGCGTAGAATCTACATCGACTTGGGTATTAA
GGATTTTAATTCGAGCCTGTGCTGGATGATGCAAAATTACCCGATTAAGT
TCGATGCTATGTATGGGTTTGAATGTGAGAGAGACATGACCAACGTGGCC
ACCTTACGGGACCCTATAAATCGGTGCATCAGTGAAACTGCGGCAGAAAA
GATGGGCTACACCACAGAAGGAACGATGGATACTCTCAAAGTGTACCACA
ATTTCATCGGCCTGGATGAGGACTTGGAGACATCACCGCAAACGCGTGGC
CTCAGCCAGTTTCTCAAAGATATTGACATACAAGAAGACGACTTTGTGGT
GCTCAAGATGGACGTTGAAGGAATCGAGTTCAGTCTTTTGGAGCGTATGA
TGGCTAATGGCACGTACAAGCTCATCGATGAGATATTCGTTGAGATCCAT
TACCGACATCCGGACATGCAACCATTCGGGTGGGACATTTTTGAACACTC
TCTCAGTGATGCGCAAGCTTTATTCACCAAGGCACGGGACATGGGAATTT
ACATCCACCCATGGCCATAAGTCTGTTTCTACAATGTCTGTTTCTACAAT
AGATCTTGCGTCAGGGAAAAAAGTTTCCAATTAAATGCAGCAAGTTTCTA
GGAAAAATAATGTAAGTTTTGAAGGATGGTAGTTGCACTCAGAACTGTGC
CGGAGTGACAATTTTGTTTTGTCGTGAGTTCACGTCTCGCTCTCTGTTAG
GGTTATATTACTCCGCAATTTTCTCATTTTCATTTCACATTCACCAGCAT
ATTATAGGTACATTTAGGACGTCCACTGCACACGTGTACCCGGGGATGGG
ACCCTTTCAGAATCGCGAATATGACGGACGTAGTTCAAAGAAATGTATTC
AGACAACTCCAGCTGTAAGACGACACACCAAAGCAAACTCAAATCAAGCC
TAGCAAAAGGCCAAGCACTTCTCGCTTAAACAACTACGCGTAGCACATAA
TTTTGCAAACGGAC
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protein sequence of NO08G04150.2

>NO08G04150.2-protein ID=NO08G04150.2-protein|Name=NO08G04150.2|organism=Nannochloropsis oceanica|type=polypeptide|length=309bp
MKFYRALKHSKPKLWWLSNMLFGGILLGYVLYMKCGYIFQSNSSLGDPVL
AISSSDSIPKLKEEIKALQQKFDVLQRRFWLEPLEPIWQYRGKFYLGKTK
DVEDKDQVTPFLLANFVDASNKTLYRRRIYIDLGIKDFNSSLCWMMQNYP
IKFDAMYGFECERDMTNVATLRDPINRCISETAAEKMGYTTEGTMDTLKV
YHNFIGLDEDLETSPQTRGLSQFLKDIDIQEDDFVVLKMDVEGIEFSLLE
RMMANGTYKLIDEIFVEIHYRHPDMQPFGWDIFEHSLSDAQALFTKARDM
GIYIHPWP*
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mRNA from alignment at chr8:1195289..1197228+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G04150.2 ID=NO08G04150.2|Name=NO08G04150.2|organism=Nannochloropsis oceanica|type=mRNA|length=1940bp|location=Sequence derived from alignment at chr8:1195289..1197228+ (Nannochloropsis oceanica)
AGAAAATCGTATCAGACAGGCTACAACGGATATTACTTGATACATGAAAT
TTTATAGAGCTTTGAAACATAGCAAGCCCAAACTTTGGTGGCTGTCGAAC
ATGCTGTTTGGCGGTATACTTCTGGGATATGTTCTATACATGAAATGTGG
CTACATATTCCAGAGCAACAGCAGCCTTGGTGATCCAGTTCTCGCCATTT
CGTCAAGCGACTCAATACCAAAGCTTAAAGAAGAAATTAAGGCACTTCAA
CAGAAGTTTGATGTTCTCCAAAGAAGGTATGTGCACACCGCGTTAGAATA
CATTTCTATTTTGCCAGGAGCTGCTCTACGTGCGAAGAACGTAGTTGGCT
TCACCTGCATCATCGATCCGCATCTAGGTTTTGGCTGGAACCCCTCGAGC
CTATTTGGCAGTACCGCGGGAAGTTTTACCTGGGAAAGACAAAAGATGTC
GAAGACAAGGACCAGGTGAGCAGATATCCGCTCACTTACAAACCTTTCCA
ACAGGAAAAACTTCCGGTTACCAAGGCCATGAGTCCTCCCCGCTATAAAT
TCTTTCCAAGCCTTCCATCACTCGATAAGCCTCTCCACTATGTCCCGTTC
GTACGACGAACTCTCTGAGAATATCTTGACCTCTACATGTTATCATGGTA
GTATACGGGACACATTTTCCCCTAATCCCTAAACCTCTTCTTCCGACCAT
CAATATTTGTGCTTCCCACTTTAGGTGACACCGTTTCTGCTGGCCAATTT
CGTCGACGCTTCGAACAAGACATTATACAGGCGTAGAATCTACATCGACT
TGGGTATTAAGGATTTTAATTCGAGCCTGTGCTGGATGATGCAAAATTAC
CCGATTAAGTTCGATGCTATGTATGGGTTTGAATGTGAGAGAGACATGAC
CAACGTGGCCACCTTACGGGACCCTATAAATCGGTGCATCAGTGAAACTG
CGGCAGAAAAGATGGGCTACACCACAGAAGGAACGATGGATACTCTCAAA
GTGTACCACAATTTCATCGGCCTGGATGAGGACTTGGAGACATCACCGCA
AACGCGTGGCCTCAGCCAGTTTCTCAAAGATATTGACATACAAGAAGACG
ACTTTGTGGTGCTCAAGATGGACGTTGAAGGAATCGAGTTCAGTCTTTTG
GAGCGTATGATGGCTAATGGCACGTACAAGCTCATCGATGAGGTACGCAC
GTTTGCAAGATAGAAGAGATATCTTGATGCGCATGCTTACAAATGAAAAA
ATTGAGATCATATATTAGTGTGTAAGGGAAACAGATGAGTACGCGACTCT
AGAGCCAATTGACGATGTTCACACTCTTTCATCAACATCATCGTACTCAT
ATTCACAGATATTCGTTGAGATCCATTACCGACATCCGGACATGCAACCA
TTCGGGTGGGACATTTTTGAACACTCTCTCAGTGATGCGCAAGCTTTATT
CACCAAGGCACGGGACATGGGAATTTACATCCACCCATGGCCATAAGTCT
GTTTCTACAATGTCTGTTTCTACAATAGATCTTGCGTCAGGGAAAAAAGT
TTCCAATTAAATGCAGCAAGTTTCTAGGAAAAATAATGTAAGTTTTGAAG
GATGGTAGTTGCACTCAGAACTGTGCCGGAGTGACAATTTTGTTTTGTCG
TGAGTTCACGTCTCGCTCTCTGTTAGGGTTATATTACTCCGCAATTTTCT
CATTTTCATTTCACATTCACCAGCATATTATAGGTACATTTAGGACGTCC
ACTGCACACGTGTACCCGGGGATGGGACCCTTTCAGAATCGCGAATATGA
CGGACGTAGTTCAAAGAAATGTATTCAGACAACTCCAGCTGTAAGACGAC
ACACCAAAGCAAACTCAAATCAAGCCTAGCAAAAGGCCAAGCACTTCTCG
CTTAAACAACTACGCGTAGCACATAATTTTGCAAACGGAC
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Coding sequence (CDS) from alignment at chr8:1195289..1197228+

>NO08G04150.2 ID=NO08G04150.2|Name=NO08G04150.2|organism=Nannochloropsis oceanica|type=CDS|length=927bp|location=Sequence derived from alignment at chr8:1195289..1197228+ (Nannochloropsis oceanica)
ATGAAATTTTATAGAGCTTTGAAACATAGCAAGCCCAAACTTTGGTGGCT
GTCGAACATGCTGTTTGGCGGTATACTTCTGGGATATGTTCTATACATGA
AATGTGGCTACATATTCCAGAGCAACAGCAGCCTTGGTGATCCAGTTCTC
GCCATTTCGTCAAGCGACTCAATACCAAAGCTTAAAGAAGAAATTAAGGC
ACTTCAACAGAAGTTTGATGTTCTCCAAAGAAGGTTTTGGCTGGAACCCC
TCGAGCCTATTTGGCAGTACCGCGGGAAGTTTTACCTGGGAAAGACAAAA
GATGTCGAAGACAAGGACCAGGTGACACCGTTTCTGCTGGCCAATTTCGT
CGACGCTTCGAACAAGACATTATACAGGCGTAGAATCTACATCGACTTGG
GTATTAAGGATTTTAATTCGAGCCTGTGCTGGATGATGCAAAATTACCCG
ATTAAGTTCGATGCTATGTATGGGTTTGAATGTGAGAGAGACATGACCAA
CGTGGCCACCTTACGGGACCCTATAAATCGGTGCATCAGTGAAACTGCGG
CAGAAAAGATGGGCTACACCACAGAAGGAACGATGGATACTCTCAAAGTG
TACCACAATTTCATCGGCCTGGATGAGGACTTGGAGACATCACCGCAAAC
GCGTGGCCTCAGCCAGTTTCTCAAAGATATTGACATACAAGAAGACGACT
TTGTGGTGCTCAAGATGGACGTTGAAGGAATCGAGTTCAGTCTTTTGGAG
CGTATGATGGCTAATGGCACGTACAAGCTCATCGATGAGATATTCGTTGA
GATCCATTACCGACATCCGGACATGCAACCATTCGGGTGGGACATTTTTG
AACACTCTCTCAGTGATGCGCAAGCTTTATTCACCAAGGCACGGGACATG
GGAATTTACATCCACCCATGGCCATAA
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Synonyms
Publications