NO08G03970.1, NO08G03970.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO08G03970.1
Unique Name	NO08G03970.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2391
Alignment location	chr8:1116224..1118614 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr8	genome	chr8:1116224..1118614 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO08G03970.1 vs.
Match: EWM26856.1 (amine oxidase [Nannochloropsis gaditana])

HSP 1 Score: 874.0 bits (2257), Expect = 2.500e-250
Identity = 429/576 (74.48%), Postives = 491/576 (85.24%), Query Frame = 0

Query:    1 MPTTTAHFTRGVVVAVILAFVLRPITRPTFEIIEPLNPQDPLRLSSTTPRHVLVAGGGLAGLSAALELAERGFQVTVREAGDVLGGRLATRQVQVAKQTFAIEHGFHAWFENYHVFADIRKRLDINHFFRPWGAVQFIFKDPKYKPESLASSGPYPWNLVSIVLRSPNLRMIDAILSTRHVFDLLWFDHTSVWAKYDEESFPEWAAAKGVAKVFYDVLYAPSLSVTVNERQNISAAEMLTMNHIYFLSHPKADHREVTNEDYETAVLGPWEKRLVEMGVVIERGRRVGGLKFGETGIKVM--EKEGKEGKDAS-FDYVVLATNLQGVKSILGSSSVSPPTALPCP---------SYITTTAALEQLKHQVSHLETAPSYKIFRAFFDKQLTGPYAQEIVLETPDSSPVNLIAQYHLLEKESADWAAKTGGSVIEFHLYTWEGGYE--KEGGFDEGEEVHALWNFLRPTVCGHILPEMCSGNFSLMDGSIAHYDDFPSFKKGLFKYRPRSQTPRELGMTRLALAGDWLSTSFPSALMERAVATGREAANVILLEEGVRQVPVPVTSNYGPGLRVLAA 563
            M +T A  +R V++  ILA++LRPI RP+F +IEPLNPQDP+ L S T R VLVAGGGLAGLSAALELAERGFQV+V EA  VLGGRLATR VQ+  QTFAIEHGFHAWF NYHVFADIRKRL I+H+FRPWGAVQFIFKDP+YKPE+L S GPYPWNL+SIVLRSPNLR IDAILSTRHV DLLWFDH +VW KYDE+SF EWA A G+A+VFYDVLYAP+LSVTVNERQNISAAEML+MNHIYFLSHP+AD REVT  DYETA++ PWE RL  +GV IERG+RVG L F ETG+ V+  E+EG+EG   S FD+VVLATNLQGVKSIL +SSVSPP++L  P         SY+T+TAAL QL+HQ S LE AP YK+FRA+FD+QL GPY QEIVLETPDSSP+NLIAQYHLLE+ESA+WA +TGGSVIEFHLYTWEGGY+  K   F  GEEV  LW FLRPTVCGH+LPEMC+ NF+L+DG +AHY+DFPSFKKGL KYRPRSQTP +LG+TRL+LAGDWLSTSFPSALMERAVATGREAANV+L EEG+RQ P+PVT+++GPGLRVLA+
Sbjct:    1 MSSTKAFLSRSVILVAILAYLLRPINRPSFTVIEPLNPQDPINLPSGTSRRVLVAGGGLAGLSAALELAERGFQVSVWEASPVLGGRLATRTVQLCNQTFAIEHGFHAWFANYHVFADIRKRLGIDHYFRPWGAVQFIFKDPRYKPEALESQGPYPWNLISIVLRSPNLRFIDAILSTRHVVDLLWFDHKTVWGKYDEQSFSEWARAMGIARVFYDVLYAPTLSVTVNERQNISAAEMLSMNHIYFLSHPRADRREVTRVDYETAIIQPWEMRLQALGVKIERGKRVGRLNFTETGVHVVEEEEEGEEGVAGSDFDHVVLATNLQGVKSILDASSVSPPSSLSSPSPPSTASSFSYVTSTAALAQLRHQTSFLEIAPPYKVFRAYFDRQLRGPYNQEIVLETPDSSPINLIAQYHLLEEESAEWARRTGGSVIEFHLYTWEGGYDGGKGDKFAAGEEVRVLWEFLRPTVCGHLLPEMCAQNFTLVDGYVAHYEDFPSFKKGLHKYRPRSQTPHQLGLTRLSLAGDWLSTSFPSALMERAVATGREAANVVLQEEGIRQAPLPVTTSHGPGLRVLAS 576

The following BLAST results are available for this feature:

BLAST of NO08G03970.1 vs.

BLAST of NO08G03970.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM26856.1	2.500e-250	74.48	amine oxidase [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO08G03970	NO08G03970	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO08G03970.1	NO08G03970.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO08G03970.1.cds1	NO08G03970.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr8:1116224..1118614-
coding sequence from alignment at chr8:1116224..1118614-

mRNA sequence

>NO08G03970.1 ID=NO08G03970.1|Name=NO08G03970.1|organism=Nannochloropsis oceanica|type=mRNA|length=2391bp
GCCGACCGGGATAGGCCTTTTTAGCCACTCATGGCATGTGACCTCGAGCT
TTCACTATGCTGGAGAAATGAGACCCGCTTGCTTGTGCATTGCGTCTTTA
TCCAGTGCTTGATTCCCAAGAACTACCCAACCCCACCACGTACGCAGGTA
GCAGCGACAGCACCTCCCCACTTCCACATGCCATTGTCACGTCGCCTAAA
TAACCAAACCCACCCTTTCTTCCCCCTCACAAATGACAAATAGGGGCCAC
GCTCTGTTAAATCATGCCCACTACCACAGCCCACTTCACCAGGGGTGTTG
TCGTTGCTGTTATCCTGGCATTCGTCCTTCGTCCCATCACTCGTCCGACC
TTTGAGATAATCGAGCCCCTCAATCCTCAAGACCCTCTCCGCCTGTCCTC
TACCACCCCCAGGCACGTTCTCGTGGCGGGTGGAGGGCTTGCAGGCCTTT
CGGCAGCCTTGGAGTTGGCCGAGCGAGGCTTCCAAGTCACTGTGCGGGAA
GCAGGAGATGTGCTGGGCGGCCGCTTGGCCACGCGGCAAGTGCAGGTTGC
GAAACAGACCTTTGCGATAGAGCATGGCTTCCATGCCTGGTTTGAAAATT
ACCACGTCTTTGCCGACATTCGTAAACGTCTTGACATTAACCACTTTTTC
CGGCCCTGGGGTGCGGTGCAATTTATCTTTAAGGACCCGAAATATAAGCC
CGAATCCTTGGCTAGCTCGGGACCCTACCCGTGGAATCTGGTAAGCATCG
TCCTGCGAAGCCCCAACCTCCGCATGATCGACGCCATACTGTCCACCCGC
CACGTGTTTGACTTGCTCTGGTTCGATCACACTTCTGTCTGGGCCAAATA
CGACGAGGAATCTTTCCCTGAATGGGCAGCCGCAAAGGGCGTGGCAAAAG
TTTTTTATGACGTTCTCTACGCCCCTTCCTTGTCCGTGACTGTGAACGAA
CGCCAAAACATCAGTGCCGCGGAGATGCTTACCATGAATCACATTTATTT
CTTGAGTCACCCCAAGGCGGATCACCGGGAGGTGACGAATGAGGACTACG
AGACCGCAGTGCTGGGGCCATGGGAGAAACGGCTCGTAGAAATGGGGGTG
GTGATCGAGCGAGGAAGAAGGGTGGGCGGGTTGAAATTCGGGGAGACAGG
GATAAAGGTGATGGAGAAAGAAGGGAAAGAGGGGAAGGACGCGTCATTTG
ATTACGTCGTCTTGGCGACTAATTTGCAGGGTGTTAAGTCCATCCTTGGC
TCCTCGTCTGTCTCTCCTCCGACCGCCCTCCCTTGTCCTTCCTACATCAC
CACCACCGCCGCCCTCGAGCAGCTCAAGCACCAAGTCTCCCACCTGGAAA
CTGCCCCCTCCTATAAGATCTTTCGCGCATTTTTCGACAAGCAATTGACA
GGTCCATACGCCCAGGAGATCGTCCTCGAGACACCCGATTCAAGCCCAGT
GAACCTGATCGCGCAATACCACTTATTAGAGAAAGAATCTGCGGATTGGG
CCGCCAAGACCGGGGGGAGCGTCATCGAGTTTCACCTGTATACCTGGGAA
GGGGGATATGAGAAGGAGGGAGGGTTTGACGAAGGGGAGGAGGTGCACGC
GCTGTGGAACTTCTTGAGGCCGACCGTGTGTGGGCACATTTTGCCCGAAA
TGTGCTCGGGGAATTTCTCTTTGATGGATGGTTCTATCGCACACTACGAC
GACTTTCCTTCGTTCAAAAAGGGTTTGTTCAAGTACAGACCAAGGAGTCA
GACACCGCGGGAGTTGGGGATGACCCGGCTGGCGTTGGCCGGCGACTGGC
TGTCGACCTCCTTTCCCTCGGCATTGATGGAACGGGCCGTGGCAACGGGG
AGGGAAGCGGCAAATGTGATATTGCTGGAGGAGGGTGTGAGGCAGGTGCC
CGTGCCTGTGACATCCAATTACGGCCCAGGCCTGAGAGTTCTGGCGGCAT
AGGATAGGGAGGTGGCAGGCTGTAATGATGGTGGAGCTGGACGGAGAGAG
AGAGCGGACGGGGGGGTGTTTAGGTGGTGGGTTATGAATGAGGAGGGAGG
CAGGGAGGGAGCGCGGGTGGGCGAGGGGACTCAGGTGGAACGTATTTTTT
ACTTGTGGGAGGGGTGATTGAGTCATTGAAACACATGAAAGTCAATTCAC
TGTAAATTAGATTCTGCGGAAAGAGACTTGAGAGTCGAGAGACTCAAAGA
AAGTGAAGATGTGCAGAGAAATCGGGGAAAAAAAACAAGGACGACTGAAC
GTGTTCCATCTTTGTCTCGTGGAGCGCGCGAGTATCAAGGAGGAAGGAAG
CCAAGGTACGGATAATGGGAATGACCCCCAAAAAAGGGAAAATAACTGAA
GGGGGAAAAATAAAATAAAAGGTTCTTATCAAGCAACACCG

protein sequence of NO08G03970.1

>NO08G03970.1-protein ID=NO08G03970.1-protein|Name=NO08G03970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=563bp
MPTTTAHFTRGVVVAVILAFVLRPITRPTFEIIEPLNPQDPLRLSSTTPR
HVLVAGGGLAGLSAALELAERGFQVTVREAGDVLGGRLATRQVQVAKQTF
AIEHGFHAWFENYHVFADIRKRLDINHFFRPWGAVQFIFKDPKYKPESLA
SSGPYPWNLVSIVLRSPNLRMIDAILSTRHVFDLLWFDHTSVWAKYDEES
FPEWAAAKGVAKVFYDVLYAPSLSVTVNERQNISAAEMLTMNHIYFLSHP
KADHREVTNEDYETAVLGPWEKRLVEMGVVIERGRRVGGLKFGETGIKVM
EKEGKEGKDASFDYVVLATNLQGVKSILGSSSVSPPTALPCPSYITTTAA
LEQLKHQVSHLETAPSYKIFRAFFDKQLTGPYAQEIVLETPDSSPVNLIA
QYHLLEKESADWAAKTGGSVIEFHLYTWEGGYEKEGGFDEGEEVHALWNF
LRPTVCGHILPEMCSGNFSLMDGSIAHYDDFPSFKKGLFKYRPRSQTPRE
LGMTRLALAGDWLSTSFPSALMERAVATGREAANVILLEEGVRQVPVPVT
SNYGPGLRVLAA*

mRNA from alignment at chr8:1116224..1118614-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO08G03970.1 ID=NO08G03970.1|Name=NO08G03970.1|organism=Nannochloropsis oceanica|type=mRNA|length=2391bp|location=Sequence derived from alignment at chr8:1116224..1118614- (Nannochloropsis oceanica)
GCCGACCGGGATAGGCCTTTTTAGCCACTCATGGCATGTGACCTCGAGCT
TTCACTATGCTGGAGAAATGAGACCCGCTTGCTTGTGCATTGCGTCTTTA
TCCAGTGCTTGATTCCCAAGAACTACCCAACCCCACCACGTACGCAGGTA
GCAGCGACAGCACCTCCCCACTTCCACATGCCATTGTCACGTCGCCTAAA
TAACCAAACCCACCCTTTCTTCCCCCTCACAAATGACAAATAGGGGCCAC
GCTCTGTTAAATCATGCCCACTACCACAGCCCACTTCACCAGGGGTGTTG
TCGTTGCTGTTATCCTGGCATTCGTCCTTCGTCCCATCACTCGTCCGACC
TTTGAGATAATCGAGCCCCTCAATCCTCAAGACCCTCTCCGCCTGTCCTC
TACCACCCCCAGGCACGTTCTCGTGGCGGGTGGAGGGCTTGCAGGCCTTT
CGGCAGCCTTGGAGTTGGCCGAGCGAGGCTTCCAAGTCACTGTGCGGGAA
GCAGGAGATGTGCTGGGCGGCCGCTTGGCCACGCGGCAAGTGCAGGTTGC
GAAACAGACCTTTGCGATAGAGCATGGCTTCCATGCCTGGTTTGAAAATT
ACCACGTCTTTGCCGACATTCGTAAACGTCTTGACATTAACCACTTTTTC
CGGCCCTGGGGTGCGGTGCAATTTATCTTTAAGGACCCGAAATATAAGCC
CGAATCCTTGGCTAGCTCGGGACCCTACCCGTGGAATCTGGTAAGCATCG
TCCTGCGAAGCCCCAACCTCCGCATGATCGACGCCATACTGTCCACCCGC
CACGTGTTTGACTTGCTCTGGTTCGATCACACTTCTGTCTGGGCCAAATA
CGACGAGGAATCTTTCCCTGAATGGGCAGCCGCAAAGGGCGTGGCAAAAG
TTTTTTATGACGTTCTCTACGCCCCTTCCTTGTCCGTGACTGTGAACGAA
CGCCAAAACATCAGTGCCGCGGAGATGCTTACCATGAATCACATTTATTT
CTTGAGTCACCCCAAGGCGGATCACCGGGAGGTGACGAATGAGGACTACG
AGACCGCAGTGCTGGGGCCATGGGAGAAACGGCTCGTAGAAATGGGGGTG
GTGATCGAGCGAGGAAGAAGGGTGGGCGGGTTGAAATTCGGGGAGACAGG
GATAAAGGTGATGGAGAAAGAAGGGAAAGAGGGGAAGGACGCGTCATTTG
ATTACGTCGTCTTGGCGACTAATTTGCAGGGTGTTAAGTCCATCCTTGGC
TCCTCGTCTGTCTCTCCTCCGACCGCCCTCCCTTGTCCTTCCTACATCAC
CACCACCGCCGCCCTCGAGCAGCTCAAGCACCAAGTCTCCCACCTGGAAA
CTGCCCCCTCCTATAAGATCTTTCGCGCATTTTTCGACAAGCAATTGACA
GGTCCATACGCCCAGGAGATCGTCCTCGAGACACCCGATTCAAGCCCAGT
GAACCTGATCGCGCAATACCACTTATTAGAGAAAGAATCTGCGGATTGGG
CCGCCAAGACCGGGGGGAGCGTCATCGAGTTTCACCTGTATACCTGGGAA
GGGGGATATGAGAAGGAGGGAGGGTTTGACGAAGGGGAGGAGGTGCACGC
GCTGTGGAACTTCTTGAGGCCGACCGTGTGTGGGCACATTTTGCCCGAAA
TGTGCTCGGGGAATTTCTCTTTGATGGATGGTTCTATCGCACACTACGAC
GACTTTCCTTCGTTCAAAAAGGGTTTGTTCAAGTACAGACCAAGGAGTCA
GACACCGCGGGAGTTGGGGATGACCCGGCTGGCGTTGGCCGGCGACTGGC
TGTCGACCTCCTTTCCCTCGGCATTGATGGAACGGGCCGTGGCAACGGGG
AGGGAAGCGGCAAATGTGATATTGCTGGAGGAGGGTGTGAGGCAGGTGCC
CGTGCCTGTGACATCCAATTACGGCCCAGGCCTGAGAGTTCTGGCGGCAT
AGGATAGGGAGGTGGCAGGCTGTAATGATGGTGGAGCTGGACGGAGAGAG
AGAGCGGACGGGGGGGTGTTTAGGTGGTGGGTTATGAATGAGGAGGGAGG
CAGGGAGGGAGCGCGGGTGGGCGAGGGGACTCAGGTGGAACGTATTTTTT
ACTTGTGGGAGGGGTGATTGAGTCATTGAAACACATGAAAGTCAATTCAC
TGTAAATTAGATTCTGCGGAAAGAGACTTGAGAGTCGAGAGACTCAAAGA
AAGTGAAGATGTGCAGAGAAATCGGGGAAAAAAAACAAGGACGACTGAAC
GTGTTCCATCTTTGTCTCGTGGAGCGCGCGAGTATCAAGGAGGAAGGAAG
CCAAGGTACGGATAATGGGAATGACCCCCAAAAAAGGGAAAATAACTGAA
GGGGGAAAAATAAAATAAAAGGTTCTTATCAAGCAACACCG

Coding sequence (CDS) from alignment at chr8:1116224..1118614-

>NO08G03970.1 ID=NO08G03970.1|Name=NO08G03970.1|organism=Nannochloropsis oceanica|type=CDS|length=1689bp|location=Sequence derived from alignment at chr8:1116224..1118614- (Nannochloropsis oceanica)
ATGCCCACTACCACAGCCCACTTCACCAGGGGTGTTGTCGTTGCTGTTAT
CCTGGCATTCGTCCTTCGTCCCATCACTCGTCCGACCTTTGAGATAATCG
AGCCCCTCAATCCTCAAGACCCTCTCCGCCTGTCCTCTACCACCCCCAGG
CACGTTCTCGTGGCGGGTGGAGGGCTTGCAGGCCTTTCGGCAGCCTTGGA
GTTGGCCGAGCGAGGCTTCCAAGTCACTGTGCGGGAAGCAGGAGATGTGC
TGGGCGGCCGCTTGGCCACGCGGCAAGTGCAGGTTGCGAAACAGACCTTT
GCGATAGAGCATGGCTTCCATGCCTGGTTTGAAAATTACCACGTCTTTGC
CGACATTCGTAAACGTCTTGACATTAACCACTTTTTCCGGCCCTGGGGTG
CGGTGCAATTTATCTTTAAGGACCCGAAATATAAGCCCGAATCCTTGGCT
AGCTCGGGACCCTACCCGTGGAATCTGGTAAGCATCGTCCTGCGAAGCCC
CAACCTCCGCATGATCGACGCCATACTGTCCACCCGCCACGTGTTTGACT
TGCTCTGGTTCGATCACACTTCTGTCTGGGCCAAATACGACGAGGAATCT
TTCCCTGAATGGGCAGCCGCAAAGGGCGTGGCAAAAGTTTTTTATGACGT
TCTCTACGCCCCTTCCTTGTCCGTGACTGTGAACGAACGCCAAAACATCA
GTGCCGCGGAGATGCTTACCATGAATCACATTTATTTCTTGAGTCACCCC
AAGGCGGATCACCGGGAGGTGACGAATGAGGACTACGAGACCGCAGTGCT
GGGGCCATGGGAGAAACGGCTCGTAGAAATGGGGGTGGTGATCGAGCGAG
GAAGAAGGGTGGGCGGGTTGAAATTCGGGGAGACAGGGATAAAGGTGATG
GAGAAAGAAGGGAAAGAGGGGAAGGACGCGTCATTTGATTACGTCGTCTT
GGCGACTAATTTGCAGGGTGTTAAGTCCATCCTTGGCTCCTCGTCTGTCT
CTCCTCCGACCGCCCTCCCTTGTCCTTCCTACATCACCACCACCGCCGCC
CTCGAGCAGCTCAAGCACCAAGTCTCCCACCTGGAAACTGCCCCCTCCTA
TAAGATCTTTCGCGCATTTTTCGACAAGCAATTGACAGGTCCATACGCCC
AGGAGATCGTCCTCGAGACACCCGATTCAAGCCCAGTGAACCTGATCGCG
CAATACCACTTATTAGAGAAAGAATCTGCGGATTGGGCCGCCAAGACCGG
GGGGAGCGTCATCGAGTTTCACCTGTATACCTGGGAAGGGGGATATGAGA
AGGAGGGAGGGTTTGACGAAGGGGAGGAGGTGCACGCGCTGTGGAACTTC
TTGAGGCCGACCGTGTGTGGGCACATTTTGCCCGAAATGTGCTCGGGGAA
TTTCTCTTTGATGGATGGTTCTATCGCACACTACGACGACTTTCCTTCGT
TCAAAAAGGGTTTGTTCAAGTACAGACCAAGGAGTCAGACACCGCGGGAG
TTGGGGATGACCCGGCTGGCGTTGGCCGGCGACTGGCTGTCGACCTCCTT
TCCCTCGGCATTGATGGAACGGGCCGTGGCAACGGGGAGGGAAGCGGCAA
ATGTGATATTGCTGGAGGAGGGTGTGAGGCAGGTGCCCGTGCCTGTGACA
TCCAATTACGGCCCAGGCCTGAGAGTTCTGGCGGCATAG

Synonyms

Publications