NO08G03640.1, NO08G03640.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G03640.1
Unique NameNO08G03640.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1463
Alignment locationchr8:1017917..1019379 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1017917..1019379 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO08G03640.1 vs.
Match: XP_500456.1 (YALI0B03322p [Yarrowia lipolytica CLIB122]; CAG82682.1 YALI0B03322p [Yarrowia lipolytica CLIB122]; AOW01165.1 hypothetical protein YALI1_B04803g [Yarrowia lipolytica]; SEI34235.1 YALIA101S04e13960g1_1 [Yarrowia lipolytica])

HSP 1 Score: 87.8 bits (216), Expect = 8.400e-14
Identity = 51/126 (40.48%), Postives = 74/126 (58.73%), Query Frame = 0 
Query:  267 EAEMKTIQLPKARIRRFIRAEMYGEKNKTVLGEVQLLMAKACEMLVEDLSHRAYVCAEEDKRKCVQRCDVARGISISDMFDFLVDLVPREYMHIKSKRGTNRSRIWLAIASLERAYGGALGGEEEE 393
            E E K  QLP ARI++ ++A+   E  K +  E  +L AK C++ + +LS RA++ AEE KR+ +QR D+A  +  SDMFDFL+D+VPRE   +    G    +   A A+   A    +G EEEE
Sbjct:   84 EHEFKVHQLPLARIKKVMKAD---EDVKMISAEAPILFAKGCDIFITELSMRAWIHAEEHKRRTLQRSDIASALQRSDMFDFLIDIVPREEATLPP--GARSRQTQSAAAAAAAAAAMYMGDEEEE 204
The following BLAST results are available for this feature:
BLAST of NO08G03640.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_500456.18.400e-1440.48YALI0B03322p [Yarrowia lipolytica CLIB122]; CAG826... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G03640NO08G03640Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G03640.1NO08G03640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G03640.1.cds1NO08G03640.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G03640.1 ID=NO08G03640.1|Name=NO08G03640.1|organism=Nannochloropsis oceanica|type=mRNA|length=1463bp
GCCTCCCAATACCACCACCCCTCTCGAAGACATCACTTCTCGGAGCAGCA
CCCATGGATTTACGTGCCGCACCCTCTTTCTGCAGTCCTTTGCCGTAGAT
TTATTATTCGTGGCGCCTCCTCATTTTCTTGTTGAAATCTTGTCGTTCTG
CTATTGGTCATACTTTCAAACCTCACGCCCCACACGCATTTTAAGGCCCG
CCCGCAACGCACCACACACACACACTAAAGGTACCCACTATGCCACTGGC
GATGAAGAAGGAGAGGGTCGCCGCATCAGCAGCGCCATCACGTCGCGGGG
GCCGTGGCGGAGGACGGGGGCATAGCAGCAGTGCTCCCTGCAGCGATCGT
CCTTCTTGCCTCCCCACCAGCACAATGAGTGAGTGCCAGGCCTTGCATAC
CTCTGACCAGCAGTACCACATCCACAGCCATGTACCACCCTGCCGCATTT
CTTGTCCCCTAAGCCCACCCATGGCTTCAGTTACTGCACGTAGTAAGGCT
CGTACCCGAGGAAGAGGGCAAGAGCGCGGACGAGGGCGAGGTCGAGGCAA
GGGTACAGGACGGCAGAGTTTGCGTCGGAGTTTTGAGGAGATTAAGAAGG
GGGAGGAGAAGGAGGACGAGGACGAGGAGGAGAAAGAAGAGGGGGAGGGA
GAGGGGGAGGAAGACATATCTATAGCCATGAAAAGAATGGGCACCAAGGG
CGATAAGCGAAGGGCCAGCCACATCCTGAGTCGCCTTAACAGTAGCAACT
GGGGCAGCGGCCGGGGAAATGAGAGAAAAACAGAGGAGGAGCAGCAGATC
AGCGACCTCAGCAGCGAGGGGAATGACGATGAGGACGATGACGAAGACGA
GAACTGGCCGTCCTCCTCCTTGTTTCCTTCTTCTGACGGCGAAGATGAAG
ATGACACCCGGGATGCCACCGCTTTGTGGGAGCAGCAGCAGTACCAAGCC
CGACTGATTCGAAGGGTGGAGGCCCACGAGGCGAAGCATTACCTGAGGGT
GTTGCAACGCACCCGTTGTCTAACCCCTGCTCAGGTCGAGGCGGAGATGA
AGACCATCCAGTTGCCTAAGGCGAGAATACGCCGCTTCATTCGTGCGGAG
ATGTATGGAGAAAAGAATAAGACCGTGTTGGGCGAGGTACAGCTGTTGAT
GGCCAAAGCATGTGAGATGCTGGTGGAGGACTTGAGTCATCGGGCATATG
TATGCGCAGAAGAAGATAAGAGGAAGTGCGTGCAGAGGTGTGACGTGGCA
AGGGGAATCAGCATCAGTGATATGTTTGACTTTTTGGTTGATCTGGTCCC
ACGGGAGTACATGCATATTAAGAGTAAGAGGGGCACTAATAGGAGCAGAA
TCTGGCTGGCAATCGCTTCGTTGGAGAGAGCATATGGAGGGGCACTGGGA
GGAGAGGAGGAGGAAAGAGGGGTAGGGGGGGGGGGAGAGAGGAGGAGAAG
GAAGGTGGGATAG
back to top

protein sequence of NO08G03640.1

>NO08G03640.1-protein ID=NO08G03640.1-protein|Name=NO08G03640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=408bp
MPLAMKKERVAASAAPSRRGGRGGGRGHSSSAPCSDRPSCLPTSTMSECQ
ALHTSDQQYHIHSHVPPCRISCPLSPPMASVTARSKARTRGRGQERGRGR
GRGKGTGRQSLRRSFEEIKKGEEKEDEDEEEKEEGEGEGEEDISIAMKRM
GTKGDKRRASHILSRLNSSNWGSGRGNERKTEEEQQISDLSSEGNDDEDD
DEDENWPSSSLFPSSDGEDEDDTRDATALWEQQQYQARLIRRVEAHEAKH
YLRVLQRTRCLTPAQVEAEMKTIQLPKARIRRFIRAEMYGEKNKTVLGEV
QLLMAKACEMLVEDLSHRAYVCAEEDKRKCVQRCDVARGISISDMFDFLV
DLVPREYMHIKSKRGTNRSRIWLAIASLERAYGGALGGEEEERGVGGGGE
RRRRKVG*
back to top

mRNA from alignment at chr8:1017917..1019379-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G03640.1 ID=NO08G03640.1|Name=NO08G03640.1|organism=Nannochloropsis oceanica|type=mRNA|length=1463bp|location=Sequence derived from alignment at chr8:1017917..1019379- (Nannochloropsis oceanica)
GCCTCCCAATACCACCACCCCTCTCGAAGACATCACTTCTCGGAGCAGCA
CCCATGGATTTACGTGCCGCACCCTCTTTCTGCAGTCCTTTGCCGTAGAT
TTATTATTCGTGGCGCCTCCTCATTTTCTTGTTGAAATCTTGTCGTTCTG
CTATTGGTCATACTTTCAAACCTCACGCCCCACACGCATTTTAAGGCCCG
CCCGCAACGCACCACACACACACACTAAAGGTACCCACTATGCCACTGGC
GATGAAGAAGGAGAGGGTCGCCGCATCAGCAGCGCCATCACGTCGCGGGG
GCCGTGGCGGAGGACGGGGGCATAGCAGCAGTGCTCCCTGCAGCGATCGT
CCTTCTTGCCTCCCCACCAGCACAATGAGTGAGTGCCAGGCCTTGCATAC
CTCTGACCAGCAGTACCACATCCACAGCCATGTACCACCCTGCCGCATTT
CTTGTCCCCTAAGCCCACCCATGGCTTCAGTTACTGCACGTAGTAAGGCT
CGTACCCGAGGAAGAGGGCAAGAGCGCGGACGAGGGCGAGGTCGAGGCAA
GGGTACAGGACGGCAGAGTTTGCGTCGGAGTTTTGAGGAGATTAAGAAGG
GGGAGGAGAAGGAGGACGAGGACGAGGAGGAGAAAGAAGAGGGGGAGGGA
GAGGGGGAGGAAGACATATCTATAGCCATGAAAAGAATGGGCACCAAGGG
CGATAAGCGAAGGGCCAGCCACATCCTGAGTCGCCTTAACAGTAGCAACT
GGGGCAGCGGCCGGGGAAATGAGAGAAAAACAGAGGAGGAGCAGCAGATC
AGCGACCTCAGCAGCGAGGGGAATGACGATGAGGACGATGACGAAGACGA
GAACTGGCCGTCCTCCTCCTTGTTTCCTTCTTCTGACGGCGAAGATGAAG
ATGACACCCGGGATGCCACCGCTTTGTGGGAGCAGCAGCAGTACCAAGCC
CGACTGATTCGAAGGGTGGAGGCCCACGAGGCGAAGCATTACCTGAGGGT
GTTGCAACGCACCCGTTGTCTAACCCCTGCTCAGGTCGAGGCGGAGATGA
AGACCATCCAGTTGCCTAAGGCGAGAATACGCCGCTTCATTCGTGCGGAG
ATGTATGGAGAAAAGAATAAGACCGTGTTGGGCGAGGTACAGCTGTTGAT
GGCCAAAGCATGTGAGATGCTGGTGGAGGACTTGAGTCATCGGGCATATG
TATGCGCAGAAGAAGATAAGAGGAAGTGCGTGCAGAGGTGTGACGTGGCA
AGGGGAATCAGCATCAGTGATATGTTTGACTTTTTGGTTGATCTGGTCCC
ACGGGAGTACATGCATATTAAGAGTAAGAGGGGCACTAATAGGAGCAGAA
TCTGGCTGGCAATCGCTTCGTTGGAGAGAGCATATGGAGGGGCACTGGGA
GGAGAGGAGGAGGAAAGAGGGGTAGGGGGGGGGGGAGAGAGGAGGAGAAG
GAAGGTGGGATAG
back to top

Coding sequence (CDS) from alignment at chr8:1017917..1019379-

>NO08G03640.1 ID=NO08G03640.1|Name=NO08G03640.1|organism=Nannochloropsis oceanica|type=CDS|length=1224bp|location=Sequence derived from alignment at chr8:1017917..1019379- (Nannochloropsis oceanica)
ATGCCACTGGCGATGAAGAAGGAGAGGGTCGCCGCATCAGCAGCGCCATC
ACGTCGCGGGGGCCGTGGCGGAGGACGGGGGCATAGCAGCAGTGCTCCCT
GCAGCGATCGTCCTTCTTGCCTCCCCACCAGCACAATGAGTGAGTGCCAG
GCCTTGCATACCTCTGACCAGCAGTACCACATCCACAGCCATGTACCACC
CTGCCGCATTTCTTGTCCCCTAAGCCCACCCATGGCTTCAGTTACTGCAC
GTAGTAAGGCTCGTACCCGAGGAAGAGGGCAAGAGCGCGGACGAGGGCGA
GGTCGAGGCAAGGGTACAGGACGGCAGAGTTTGCGTCGGAGTTTTGAGGA
GATTAAGAAGGGGGAGGAGAAGGAGGACGAGGACGAGGAGGAGAAAGAAG
AGGGGGAGGGAGAGGGGGAGGAAGACATATCTATAGCCATGAAAAGAATG
GGCACCAAGGGCGATAAGCGAAGGGCCAGCCACATCCTGAGTCGCCTTAA
CAGTAGCAACTGGGGCAGCGGCCGGGGAAATGAGAGAAAAACAGAGGAGG
AGCAGCAGATCAGCGACCTCAGCAGCGAGGGGAATGACGATGAGGACGAT
GACGAAGACGAGAACTGGCCGTCCTCCTCCTTGTTTCCTTCTTCTGACGG
CGAAGATGAAGATGACACCCGGGATGCCACCGCTTTGTGGGAGCAGCAGC
AGTACCAAGCCCGACTGATTCGAAGGGTGGAGGCCCACGAGGCGAAGCAT
TACCTGAGGGTGTTGCAACGCACCCGTTGTCTAACCCCTGCTCAGGTCGA
GGCGGAGATGAAGACCATCCAGTTGCCTAAGGCGAGAATACGCCGCTTCA
TTCGTGCGGAGATGTATGGAGAAAAGAATAAGACCGTGTTGGGCGAGGTA
CAGCTGTTGATGGCCAAAGCATGTGAGATGCTGGTGGAGGACTTGAGTCA
TCGGGCATATGTATGCGCAGAAGAAGATAAGAGGAAGTGCGTGCAGAGGT
GTGACGTGGCAAGGGGAATCAGCATCAGTGATATGTTTGACTTTTTGGTT
GATCTGGTCCCACGGGAGTACATGCATATTAAGAGTAAGAGGGGCACTAA
TAGGAGCAGAATCTGGCTGGCAATCGCTTCGTTGGAGAGAGCATATGGAG
GGGCACTGGGAGGAGAGGAGGAGGAAAGAGGGGTAGGGGGGGGGGGAGAG
AGGAGGAGAAGGAAGGTGGGATAG
back to top
Synonyms
Publications