NO08G03470.1, NO08G03470.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G03470.1
Unique NameNO08G03470.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2143
Alignment locationchr8:965858..968246 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:965858..968246 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G03470.1 vs.
Match: XP_005854283.1 (yip1 domain-containing protein [Nannochloropsis gaditana CCMP526]; EKU22074.1 yip1 domain-containing protein [Nannochloropsis gaditana CCMP526]; EWM26791.1 yip1 domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 363.6 bits (932), Expect = 4.800e-97
Identity = 204/260 (78.46%), Postives = 220/260 (84.62%), Query Frame = 0 
Query:    1 MASYGQQQQQQQWYAGGPA-----AGA-----AGAYAAPVGMTGI--TPGSNYYGQGMTGGTSMSGGGGDVGVGQWGGSMDSVGVEEDYSMEPPLLEELGINFRHIGEKTKTVFMPMRSMDEHIMDDADLAGPLFFLLCFGIFLLLTGKVHFGYIYGFGVSGCLAMYLVLNLLSVKEIDIWRVCSILGYGLLPVIVLSFLGIAVSLKGPVGQGIATFTIAWSTYSSTRLFEKALNMSQQRYLVAYPVALVYAIFVLITVF 249
            MASYG  Q QQ WYAGGP+     AGA      G+Y AP GM+G    PGSNY  QG++GG++M  GGG    GQWGGSMDS G EEDYSMEPPLL ELGINF+HI EKTKTV MP+ SMDEHIMDDADLAGPLFFLL FGIFLL+TGKVHFGYIYGFGVSGC+AMYLVLNLLS K+ID+WRVCSILGYGLLPVI L+FLGIAVSLKG VGQG+AT TIAWSTY+STRLFEKALNMSQQRYLVAYPVALVYAIFVLITVF
Sbjct:    1 MASYGHHQPQQ-WYAGGPSSFDTRAGAMAGAPGGSYPAP-GMSGAGTVPGSNYLAQGVSGGSTMVNGGG----GQWGGSMDSGGGEEDYSMEPPLLVELGINFQHIWEKTKTVLMPLGSMDEHIMDDADLAGPLFFLLSFGIFLLMTGKVHFGYIYGFGVSGCIAMYLVLNLLSPKDIDVWRVCSILGYGLLPVIGLAFLGIAVSLKGGVGQGLATLTIAWSTYASTRLFEKALNMSQQRYLVAYPVALVYAIFVLITVF 254
The following BLAST results are available for this feature:
BLAST of NO08G03470.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854283.14.800e-9778.46yip1 domain-containing protein [Nannochloropsis ga... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G03470NO08G03470Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G03470.1NO08G03470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G03470.1.cds1NO08G03470.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G03470.1.cds2NO08G03470.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G03470.1 ID=NO08G03470.1|Name=NO08G03470.1|organism=Nannochloropsis oceanica|type=mRNA|length=2143bp
GGAGGAGGAGGAGGAGGAGGAGGAAATGCCCCGTCGCTTGACACGTTCCT
CTTCCTCGTCAATGCGGAGATATCTCAACACTTGCATGGCCGAGGGTAAA
CCTTCTCGCGGACCCTCGCCGTAATCCGCATCTAAATCTTCTTCCTCTTC
TGTCTCTTCTTCTCCTCTGTCTCCTCCTCCTCCTTGCCCTTCCTTCTCCC
GTCCATCCTCCCCTTCTTGCCTACTTCTTGCTCCCACCAAAGCACCCACG
TGTCCTTCATTCCTCCGCCACCCCCCCCTCCTTGATGTTTCCCCATTCCT
TTCCCCTTCCTCCCCACCTCCCTCCCGTCGAAAAAGAAGAATATGGTCCA
CCAACAACTGCACCGCATCGGCAACTGGCCTGGATTTATTCGATCGATTC
GCGACGTAATCCCCAAAGTACTCATGACCCACAGTCCAACACCAATCTGT
TAGACCCGCCGCGCGTTTGTAGGCCTCGAGCAGCTTGTCATTGACACAGC
AACCTGCTTCGTTTACCAAATCGGCTTTATGGGCCAGTAAGACACGTGGA
ACATGTGCCGGGACGTAGCGCGCAAGTAAATGCTGCCATGCATCCACCGC
TGCAAGCGATTCCCGGTTACTTACATCTAGAACAAGGAAAATGCCCGACA
CATTCGTGCAAATCAAGGCGTGGTGACTCGCCGAGGCTACCAATTCCTTA
TGGCTCACATCCCAAAAATGCAAGTGGACCGGCCGGGCGTCGTCATCGCC
GTCGGTGATGTTACGGGCCGTCGCTTGACACGCAGGTAAAGGGTACACGA
TAACATCCACACCAATTGTAGGGACGTATTGCAGGCCGGCTAAGGGCTTG
TCGACAAAGCGGCGGATGAAGCTTGTCTTGCCCACAGCGGCCCCGCCAAC
TATGAGGATCTTCTCCGTCACTTCCAAGCAGGGAGGGGGTAGCAATTCCA
TCGGATTGAGGAGGAGGATGGCTGATTACCAGCTGAGTGGGAAAGGTAAA
GGCATTGTACGGGGCTGTGTTGTTATATGTGGGGTTGGAAGAGAGGAAGA
AGGGTGAAGGGGGGAGAGAGGAGGTCGGTATCGTCATCCGGAAAGTTTTC
AAAAGGAGGCACGCCTAGCACGCTGCCATAGCGCGCCGGTGCAGCCAAGT
ATTTCCTCCTTTCACCATCACGAGCACATCACACAAATCCAACGCACTCT
CGGGTCGTCTTCCCATCATGAATCGGCACACTGTGCGTCCGCTTTTCCAG
TTCTGAGGCCGGATCATCGCTAACCCGCCCTCGCCCGTTGCCCGCGCCTT
CCTTGCTTCTTGTGCTCAACGCTCATGCTCACCATGCACGCTATTACAGG
TTACACACAAAGTCATGGCGTCGTACGGCCAGCAACAGCAACAGCAGCAA
TGGTACGCAGGCGGGCCCGCTGCAGGTGCAGCAGGAGCCTACGCTGCGCC
GGTAGGCATGACAGGCATCACCCCAGGGAGCAATTATTACGGGCAAGGCA
TGACAGGAGGGACCAGCATGAGCGGAGGAGGAGGGGATGTGGGAGTGGGG
CAATGGGGGGGATCTATGGACTCGGTGGGCGTGGAGGAGGATTACTCAAT
GGAGCCGCCGTTGTTGGAGGAGCTGGGGATTAATTTCAGACACATCGGGG
AGAAGACCAAGACGGTTTTCATGCCGATGAGGTCGATGGATGAACACATT
ATGGATGACGCGGACTTGGCTGGGCCTTTATTCTTCTTATTGTGCTTTGG
TATATTTTTGCTGCTGACGGGCAAAGTCCATTTCGGGTATATATACGGGT
TCGGTGTGTCGGGGTGCTTGGCGATGTACTTGGTGTTAAATTTGCTGAGC
GTTAAAGAAATCGACATCTGGCGTGTCTGCTCTATACTAGGCTACGGTCT
GCTGCCTGTTATCGTCCTCTCCTTTCTCGGAATCGCCGTATCTCTGAAAG
GGCCTGTTGGACAGGGTATCGCTACCTTTACCATCGCTTGGTCCACCTAC
TCCTCAACGCGTCTGTTTGAAAAAGCGTTAAACATGAGCCAGCAAAGATA
TTTGGTTGCGTATCCCGTAGCGCTTGTGTATGCAATTTTCGTGTTAATCA
CTGTCTTTTGAGGGGAGGGAGAGGGAGGGAGGGGGGATGGGAG
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protein sequence of NO08G03470.1

>NO08G03470.1-protein ID=NO08G03470.1-protein|Name=NO08G03470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=249bp
MASYGQQQQQQQWYAGGPAAGAAGAYAAPVGMTGITPGSNYYGQGMTGGT
SMSGGGGDVGVGQWGGSMDSVGVEEDYSMEPPLLEELGINFRHIGEKTKT
VFMPMRSMDEHIMDDADLAGPLFFLLCFGIFLLLTGKVHFGYIYGFGVSG
CLAMYLVLNLLSVKEIDIWRVCSILGYGLLPVIVLSFLGIAVSLKGPVGQ
GIATFTIAWSTYSSTRLFEKALNMSQQRYLVAYPVALVYAIFVLITVF*
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mRNA from alignment at chr8:965858..968246+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G03470.1 ID=NO08G03470.1|Name=NO08G03470.1|organism=Nannochloropsis oceanica|type=mRNA|length=2389bp|location=Sequence derived from alignment at chr8:965858..968246+ (Nannochloropsis oceanica)
GGAGGAGGAGGAGGAGGAGGAGGAAATGCCCCGTCGCTTGACACGTTCCT
CTTCCTCGTCAATGCGGAGATATCTCAACACTTGCATGGCCGAGGGTAAA
CCTTCTCGCGGACCCTCGCCGTAATCCGCATCTAAATCTTCTTCCTCTTC
TGTCTCTTCTTCTCCTCTGTCTCCTCCTCCTCCTTGCCCTTCCTTCTCCC
GTCCATCCTCCCCTTCTTGCCTACTTCTTGCTCCCACCAAAGCACCCACG
TGTCCTTCATTCCTCCGCCACCCCCCCCTCCTTGATGTTTCCCCATTCCT
TTCCCCTTCCTCCCCACCTCCCTCCCGTCGAAAAAGAAGAATATGGTCCA
CCAACAACTGCACCGCATCGGCAACTGGCCTGGATTTATTCGATCGATTC
GCGACGTAATCCCCAAAGTACTCATGACCCACAGTCCAACACCAATCTGT
TAGACCCGCCGCGCGTTTGTAGGCCTCGAGCAGCTTGTCATTGACACAGC
AACCTGCTTCGTTTACCAAATCGGCTTTATGGGCCAGTAAGACACGTGGA
ACATGTGCCGGGACGTAGCGCGCAAGTAAATGCTGCCATGCATCCACCGC
TGCAAGCGATTCCCGGTTACTTACATCTAGAACAAGGAAAATGCCCGACA
CATTCGTGCAAATCAAGGCGTGGTGACTCGCCGAGGCTACCAATTCCTTA
TGGCTCACATCCCAAAAATGCAAGTGGACCGGCCGGGCGTCGTCATCGCC
GTCGGTGATGTTACGGGCCGTCGCTTGACACGCAGGTAAAGGGTACACGA
TAACATCCACACCAATTGTAGGGACGTATTGCAGGCCGGCTAAGGGCTTG
TCGACAAAGCGGCGGATGAAGCTTGTCTTGCCCACAGCGGCCCCGCCAAC
TATGAGGATCTTCTCCGTCACTTCCAAGCAGGGAGGGGGTAGCAATTCCA
TCGGATTGAGGAGGAGGATGGCTGATTACCAGCTGAGTGGGAAAGGTAAA
GGCATTGTACGGGGCTGTGTTGTTATATGTGGGGTTGGAAGAGAGGAAGA
AGGGTGAAGGGGGGAGAGAGGAGGTCGGTATCGTCATCCGGAAAGTTTTC
AAAAGGAGGCACGCCTAGCACGCTGCCATAGCGCGCCGGTGCAGCCAAGT
ATTTCCTCCTTTCACCATCACGAGCACATCACACAAATCCAACGCACTCT
CGGGTCGTCTTCCCATCATGAATCGGCACACTGTGCGTCCGCTTTTCCAG
TTCTGAGGCCGGATCATCGCTAACCCGCCCTCGCCCGTTGCCCGCGCCTT
CCTTGCTTCTTGTGCTCAACGCTCATGCTCACCATGCACGCTATTACAGG
TTACACACAAAGTCATGGCGTCGTACGGCCAGCAACAGCAACAGCAGCAA
TGGTACGCAGGCGGGCCCGCTGCAGGTGCAGCAGGAGCCTACGCTGCGCC
GGTAGGCATGACAGGCATCACCCCAGGGAGCAATTATTACGGGCAAGGCA
TGACAGGAGGGACCAGCATGAGCGGAGGAGGAGGGGATGTGGGAGTGGGG
CAATGGGGGGGATCTATGGACTCGGTGGGCGTGGAGGAGGATTACTCAAT
GGAGCCGCCGTTGTTGGAGGAGCTGGGGATTAATTTCAGACACATCGGGG
AGAAGACCAAGACGGTTTTCATGCCGATGAGGTCGATGGATGAACACATT
ATGGATGACGCGGACTTGGCTGGGCCTTTATTCTTCTTATTGTGCTTTGG
TATATTTTTGCTGCTGACGGGCAAAGTCCATTTCGGGTATATATACGGGT
TCGGTGTGTCGGGGTGCTTGGCGATGTACTTGGTGTTAAATTTGCTGGTG
AGTTGCACGGGAGCGGAGGGAGGGAGGGAGTGGAAGAGGAAAAGAGGGAG
AATAGATTACATACGTTACATCTTAATCATTTTGCGCCACAATGTCAATA
GCCCGTGTCTAAATTACCATGTATCCATTAATCTCACCGCTCTCACTCCC
CACTTCCTCCCTCTCTCCCTCCCTCTCTCCCGCCCTCACTCCCTCCCTCC
TTTCCCTCCCTACTTCCCTCCCTACTTCCCTCCCTTCCCTCAGAGCGTTA
AAGAAATCGACATCTGGCGTGTCTGCTCTATACTAGGCTACGGTCTGCTG
CCTGTTATCGTCCTCTCCTTTCTCGGAATCGCCGTATCTCTGAAAGGGCC
TGTTGGACAGGGTATCGCTACCTTTACCATCGCTTGGTCCACCTACTCCT
CAACGCGTCTGTTTGAAAAAGCGTTAAACATGAGCCAGCAAAGATATTTG
GTTGCGTATCCCGTAGCGCTTGTGTATGCAATTTTCGTGTTAATCACTGT
CTTTTGAGGGGAGGGAGAGGGAGGGAGGGGGGATGGGAG
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Coding sequence (CDS) from alignment at chr8:965858..968246+

>NO08G03470.1 ID=NO08G03470.1|Name=NO08G03470.1|organism=Nannochloropsis oceanica|type=CDS|length=747bp|location=Sequence derived from alignment at chr8:965858..968246+ (Nannochloropsis oceanica)
ATGGCGTCGTACGGCCAGCAACAGCAACAGCAGCAATGGTACGCAGGCGG
GCCCGCTGCAGGTGCAGCAGGAGCCTACGCTGCGCCGGTAGGCATGACAG
GCATCACCCCAGGGAGCAATTATTACGGGCAAGGCATGACAGGAGGGACC
AGCATGAGCGGAGGAGGAGGGGATGTGGGAGTGGGGCAATGGGGGGGATC
TATGGACTCGGTGGGCGTGGAGGAGGATTACTCAATGGAGCCGCCGTTGT
TGGAGGAGCTGGGGATTAATTTCAGACACATCGGGGAGAAGACCAAGACG
GTTTTCATGCCGATGAGGTCGATGGATGAACACATTATGGATGACGCGGA
CTTGGCTGGGCCTTTATTCTTCTTATTGTGCTTTGGTATATTTTTGCTGC
TGACGGGCAAAGTCCATTTCGGGTATATATACGGGTTCGGTGTGTCGGGG
TGCTTGGCGATGTACTTGGTGTTAAATTTGCTGAGCGTTAAAGAAATCGA
CATCTGGCGTGTCTGCTCTATACTAGGCTACGGTCTGCTGCCTGTTATCG
TCCTCTCCTTTCTCGGAATCGCCGTATCTCTGAAAGGGCCTGTTGGACAG
GGTATCGCTACCTTTACCATCGCTTGGTCCACCTACTCCTCAACGCGTCT
GTTTGAAAAAGCGTTAAACATGAGCCAGCAAAGATATTTGGTTGCGTATC
CCGTAGCGCTTGTGTATGCAATTTTCGTGTTAATCACTGTCTTTTGA
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Synonyms
Publications