NO08G03210.1, NO08G03210.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G03210.1
Unique NameNO08G03210.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2042
Alignment locationchr8:881187..883446 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:881187..883446 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G03210.1 vs.
Match: EWM26832.1 (Zinc finger, DHHC-type, palmitoyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 495.7 bits (1275), Expect = 2.000e-136
Identity = 291/577 (50.43%), Postives = 350/577 (60.66%), Query Frame = 0 
Query:   23 SASAFLPTSSLHLSSLPAVQHEQQNSTFGVYRFKPGGDFLSLLIHTLPDPMAPITAVLRTPTLLTIRQVLNDASAAAAHAAAAAEAGSSSSSGNSSSTSRGSLHHPYHHQGQYYYHGDDDQQQQQQQQQPQLSLQPPYGVWWRVEWHNKEGWLQGEDPMKGCPWPCLEPVKSYRLYESWRGAHTFWCRGKVMLGPDSTIFFVSNLMILVPAVVFLLFVGPSLPTLQSSIAVEATVGLLLLASIFYLWRTALLDPGVIPALPAHVKPSLPPSNSGGPSARLSTGAGADADGGVGAVGGRGGSPPSPAPTPTTRFSQGEGGGREEGGREREGERGEGQGLNLNGWRYCETCNIYRPPRAKHCRSCNCCVEKMDHHCVWVGTCVAKRNYRSFILFLLMTSTLSVLVFAACLTVVLRHLLHAPEPADALWKVAGEFPAAAGVGVFCFLMSWSLASLCSYHCFLIATGQTTNEMLRRRGGGGGEGGGRE---RGGWWGNFLGMWKEKVGPSMLPRDFSRIVRVGEGRKEGGRGRGKMEEEKGQWGRRKESEDETRRRLLSRPGEE-GGDGLR-EGMGVDDEG 595
            SAS  LPT S   S  PAV HEQ   ++GVYRFKP GDF SLL+HT PD M+ I AVLR P L T+RQ+  D            E GS                               D Q Q      Q   Q  +GVWWRVEWHNKEGW+QG+D + G  WPCL  V SYRL+E+WRGAHTFWCRG+VMLGPDS  F  SN++IL+PA+ FL+++ PSLPTL + + VE   G L+++S+++LWRTAL DPG+IPALPAHV+P+ P S    P   ++                     P P P   +  ++    G+E   R REG+        L+GWRYCETCN+YRPPRAKHCRSCNCCVE+MDHHC+WVGTCVAKRNYRSF+LF+L T+ LSV VFA CL VV+RHLLH+PEP  ALW VAG+FPAAAGVGVF F+MSWSLASLCSYH +LIAT QTTNE LRR         GRE     G+W N + +W E VG S LP  F R V V    K   R  GK  E   +   R+ S +E R+ L  +  E   GDG R   M  +D G
Sbjct:   14 SASHLLPTISESFS--PAVLHEQDEPSYGVYRFKPNGDFRSLLVHTAPDCMSSIAAVLRRPVLFTVRQIATDDPG----PEVVMEEGSDPV----------------------------DPQDQIHNLSGQDHYQRVHGVWWRVEWHNKEGWMQGQDSLTGQQWPCLHSVTSYRLFEAWRGAHTFWCRGRVMLGPDSKAFLCSNVLILLPALTFLIWIAPSLPTLIARLVVEILAGCLIMSSMYFLWRTALSDPGIIPALPAHVRPAPPTS----PMHDVA---------------------PLPCPVKVSTMTRDLREGQERDLRSREGQ--------LHGWRYCETCNVYRPPRAKHCRSCNCCVERMDHHCIWVGTCVAKRNYRSFVLFVLTTTVLSVFVFATCLAVVVRHLLHSPEPVQALWMVAGQFPAAAGVGVFTFVMSWSLASLCSYHIYLIATAQTTNEALRR------PSRGRENEFNQGFWQNCVNVWTEDVGGSRLPATFHRKVCVEAWHKRTARPGGKCPESCNETKEREGSGEEGRQDLQGQNDEGFSGDGDRCHLMSTEDMG 517
The following BLAST results are available for this feature:
BLAST of NO08G03210.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26832.12.000e-13650.43Zinc finger, DHHC-type, palmitoyltransferase [Nann... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G03210NO08G03210Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G03210.1NO08G03210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G03210.1.cds1NO08G03210.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G03210.1.cds2NO08G03210.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G03210.1 ID=NO08G03210.1|Name=NO08G03210.1|organism=Nannochloropsis oceanica|type=mRNA|length=2042bp
AGGCATTTAACCGCTACCACTCAAGTGCATGCCGCCAGCCCCTCTGGCAT
CATCATCACCAAGCCCTCCTGGCCCAGCCGCCCTCCTGGTCTGACCAAGC
GTCCGACCAACACGACATACATATACCAAGGCAAGTCATGGCCAGCACCG
CATCATCATTTGAGACCAAGGAGGAGGAGCGCAGGTCGTTTGGGCAGGGG
GCTTCTGCTTCTGCTTTCTTACCGACATCTTCCCTCCACCTATCATCACT
GCCCGCCGTGCAGCACGAGCAGCAGAACAGCACCTTTGGTGTCTATCGAT
TCAAGCCCGGCGGAGACTTTCTCAGCCTCCTCATCCACACCCTGCCCGAC
CCCATGGCCCCAATCACAGCCGTCCTTCGCACCCCCACCCTCCTAACAAT
TCGACAAGTCCTCAACGACGCCTCCGCTGCGGCCGCACACGCAGCAGCTG
CTGCCGAGGCAGGCAGTAGTAGCAGCAGTGGCAACAGCAGCAGCACTAGC
AGGGGTAGTCTTCACCATCCCTACCACCACCAGGGCCAGTATTACTACCA
TGGCGACGACGACCAGCAGCAGCAGCAGCAGCAGCAGCAGCCACAGTTAT
CTCTGCAGCCGCCTTATGGAGTGTGGTGGCGAGTAGAATGGCACAACAAG
GAGGGGTGGCTGCAAGGGGAAGACCCCATGAAAGGCTGTCCCTGGCCTTG
TCTCGAGCCGGTGAAATCATATCGTTTGTATGAGAGCTGGAGGGGGGCGC
ACACCTTTTGGTGTCGAGGAAAAGTGATGCTCGGGCCGGATTCCACAATT
TTTTTCGTAAGCAATCTAATGATTCTCGTGCCGGCTGTGGTCTTCCTCCT
GTTTGTGGGGCCCTCTCTCCCTACTTTGCAGTCGAGTATAGCTGTAGAAG
CAACAGTGGGGTTGTTGCTGCTTGCGTCGATCTTCTACCTGTGGCGCACG
GCTTTGCTAGACCCTGGCGTCATTCCAGCCTTGCCTGCGCATGTCAAGCC
CTCTCTCCCTCCCTCAAATTCTGGGGGGCCGAGCGCTCGCCTTAGTACTG
GTGCTGGTGCTGATGCTGATGGTGGCGTTGGTGCTGTTGGTGGGAGGGGG
GGTAGTCCTCCCTCCCCCGCTCCCACGCCGACGACAAGGTTCTCTCAAGG
AGAAGGAGGGGGAAGGGAGGAAGGGGGAAGAGAGAGAGAAGGGGAGAGAG
GGGAAGGACAAGGATTGAATCTTAACGGTTGGCGATACTGCGAAACGTGC
AACATCTACCGTCCTCCTCGGGCGAAGCATTGTCGCTCGTGCAATTGCTG
CGTGGAAAAGATGGACCATCACTGCGTGTGGGTGGGTACATGTGTGGCGA
AGCGGAACTATCGCTCCTTTATCCTCTTCCTCCTTATGACCTCCACTCTC
TCTGTGCTCGTTTTCGCCGCCTGTCTCACAGTCGTTCTGCGTCATCTGTT
GCATGCCCCAGAGCCGGCGGATGCCCTTTGGAAAGTGGCGGGAGAGTTCC
CAGCCGCTGCCGGAGTGGGCGTATTTTGCTTCTTAATGTCCTGGTCCTTG
GCGTCTTTATGTTCCTACCATTGTTTTTTGATCGCGACGGGACAGACGAC
AAATGAGATGCTGAGACGACGTGGAGGAGGAGGAGGAGAAGGAGGAGGGA
GGGAGCGAGGGGGTTGGTGGGGGAATTTTCTTGGGATGTGGAAGGAGAAG
GTGGGTCCCAGCATGTTGCCGAGAGATTTTTCAAGGATTGTTAGGGTTGG
GGAGGGAAGGAAGGAGGGAGGGAGGGGGAGGGGGAAGATGGAGGAGGAGA
AGGGCCAGTGGGGGCGTAGGAAAGAGAGTGAGGATGAGACGAGGCGGCGG
TTATTAAGTCGGCCGGGGGAGGAAGGGGGGGATGGATTGAGGGAGGGGAT
GGGGGTTGATGATGAGGGAGAAAGGGATGAAGTAGTGTAGATAGAGCAAT
GGTGGCTCGTGCAAAATAAATGAAAGCAAAGCAATCGAAAGAGCAAGTAA
CAGAAGATTAAATCAACAATGACGGTGATTTCTCTCGGCACA
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protein sequence of NO08G03210.1

>NO08G03210.1-protein ID=NO08G03210.1-protein|Name=NO08G03210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=601bp
MASTASSFETKEEERRSFGQGASASAFLPTSSLHLSSLPAVQHEQQNSTF
GVYRFKPGGDFLSLLIHTLPDPMAPITAVLRTPTLLTIRQVLNDASAAAA
HAAAAAEAGSSSSSGNSSSTSRGSLHHPYHHQGQYYYHGDDDQQQQQQQQ
QPQLSLQPPYGVWWRVEWHNKEGWLQGEDPMKGCPWPCLEPVKSYRLYES
WRGAHTFWCRGKVMLGPDSTIFFVSNLMILVPAVVFLLFVGPSLPTLQSS
IAVEATVGLLLLASIFYLWRTALLDPGVIPALPAHVKPSLPPSNSGGPSA
RLSTGAGADADGGVGAVGGRGGSPPSPAPTPTTRFSQGEGGGREEGGRER
EGERGEGQGLNLNGWRYCETCNIYRPPRAKHCRSCNCCVEKMDHHCVWVG
TCVAKRNYRSFILFLLMTSTLSVLVFAACLTVVLRHLLHAPEPADALWKV
AGEFPAAAGVGVFCFLMSWSLASLCSYHCFLIATGQTTNEMLRRRGGGGG
EGGGRERGGWWGNFLGMWKEKVGPSMLPRDFSRIVRVGEGRKEGGRGRGK
MEEEKGQWGRRKESEDETRRRLLSRPGEEGGDGLREGMGVDDEGERDEVV
*
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mRNA from alignment at chr8:881187..883446-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G03210.1 ID=NO08G03210.1|Name=NO08G03210.1|organism=Nannochloropsis oceanica|type=mRNA|length=2260bp|location=Sequence derived from alignment at chr8:881187..883446- (Nannochloropsis oceanica)
AGGCATTTAACCGCTACCACTCAAGTGCATGCCGCCAGCCCCTCTGGCAT
CATCATCACCAAGCCCTCCTGGCCCAGCCGCCCTCCTGGTCTGACCAAGC
GTCCGACCAACACGACATACATATACCAAGGCAAGTCATGGCCAGCACCG
CATCATCATTTGAGACCAAGGAGGAGGAGCGCAGGTCGTTTGGGCAGGGG
GCTTCTGCTTCTGCTTTCTTACCGACATCTTCCCTCCACCTATCATCACT
GCCCGCCGTGCAGCACGAGCAGCAGAACAGCACCTTTGGTGTCTATCGAT
TCAAGGTGCGTTACAAGAAGATCATCTATCTATAGCGACGAGTGGAGTGT
GTCTGCCGCCCTGAGTGAGATTTTTTTTTTTTTTAAATGCGTCGGCCCAC
TCCGTTCCTACCAAAAACGTTGCACGCGCCCACGCGCCTAGCAATTTCAA
AATCGCGCTCACTCTTCTCATACGCTGCTCTCGCTCTCCCTCTTCCACTC
CTTCCACCCCACCTCCTGAATAGCCCGGCGGAGACTTTCTCAGCCTCCTC
ATCCACACCCTGCCCGACCCCATGGCCCCAATCACAGCCGTCCTTCGCAC
CCCCACCCTCCTAACAATTCGACAAGTCCTCAACGACGCCTCCGCTGCGG
CCGCACACGCAGCAGCTGCTGCCGAGGCAGGCAGTAGTAGCAGCAGTGGC
AACAGCAGCAGCACTAGCAGGGGTAGTCTTCACCATCCCTACCACCACCA
GGGCCAGTATTACTACCATGGCGACGACGACCAGCAGCAGCAGCAGCAGC
AGCAGCAGCCACAGTTATCTCTGCAGCCGCCTTATGGAGTGTGGTGGCGA
GTAGAATGGCACAACAAGGAGGGGTGGCTGCAAGGGGAAGACCCCATGAA
AGGCTGTCCCTGGCCTTGTCTCGAGCCGGTGAAATCATATCGTTTGTATG
AGAGCTGGAGGGGGGCGCACACCTTTTGGTGTCGAGGAAAAGTGATGCTC
GGGCCGGATTCCACAATTTTTTTCGTAAGCAATCTAATGATTCTCGTGCC
GGCTGTGGTCTTCCTCCTGTTTGTGGGGCCCTCTCTCCCTACTTTGCAGT
CGAGTATAGCTGTAGAAGCAACAGTGGGGTTGTTGCTGCTTGCGTCGATC
TTCTACCTGTGGCGCACGGCTTTGCTAGACCCTGGCGTCATTCCAGCCTT
GCCTGCGCATGTCAAGCCCTCTCTCCCTCCCTCAAATTCTGGGGGGCCGA
GCGCTCGCCTTAGTACTGGTGCTGGTGCTGATGCTGATGGTGGCGTTGGT
GCTGTTGGTGGGAGGGGGGGTAGTCCTCCCTCCCCCGCTCCCACGCCGAC
GACAAGGTTCTCTCAAGGAGAAGGAGGGGGAAGGGAGGAAGGGGGAAGAG
AGAGAGAAGGGGAGAGAGGGGAAGGACAAGGATTGAATCTTAACGGTTGG
CGATACTGCGAAACGTGCAACATCTACCGTCCTCCTCGGGCGAAGCATTG
TCGCTCGTGCAATTGCTGCGTGGAAAAGATGGACCATCACTGCGTGTGGG
TGGGTACATGTGTGGCGAAGCGGAACTATCGCTCCTTTATCCTCTTCCTC
CTTATGACCTCCACTCTCTCTGTGCTCGTTTTCGCCGCCTGTCTCACAGT
CGTTCTGCGTCATCTGTTGCATGCCCCAGAGCCGGCGGATGCCCTTTGGA
AAGTGGCGGGAGAGTTCCCAGCCGCTGCCGGAGTGGGCGTATTTTGCTTC
TTAATGTCCTGGTCCTTGGCGTCTTTATGTTCCTACCATTGTTTTTTGAT
CGCGACGGGACAGACGACAAATGAGATGCTGAGACGACGTGGAGGAGGAG
GAGGAGAAGGAGGAGGGAGGGAGCGAGGGGGTTGGTGGGGGAATTTTCTT
GGGATGTGGAAGGAGAAGGTGGGTCCCAGCATGTTGCCGAGAGATTTTTC
AAGGATTGTTAGGGTTGGGGAGGGAAGGAAGGAGGGAGGGAGGGGGAGGG
GGAAGATGGAGGAGGAGAAGGGCCAGTGGGGGCGTAGGAAAGAGAGTGAG
GATGAGACGAGGCGGCGGTTATTAAGTCGGCCGGGGGAGGAAGGGGGGGA
TGGATTGAGGGAGGGGATGGGGGTTGATGATGAGGGAGAAAGGGATGAAG
TAGTGTAGATAGAGCAATGGTGGCTCGTGCAAAATAAATGAAAGCAAAGC
AATCGAAAGAGCAAGTAACAGAAGATTAAATCAACAATGACGGTGATTTC
TCTCGGCACA
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Coding sequence (CDS) from alignment at chr8:881187..883446-

>NO08G03210.1 ID=NO08G03210.1|Name=NO08G03210.1|organism=Nannochloropsis oceanica|type=CDS|length=1803bp|location=Sequence derived from alignment at chr8:881187..883446- (Nannochloropsis oceanica)
ATGGCCAGCACCGCATCATCATTTGAGACCAAGGAGGAGGAGCGCAGGTC
GTTTGGGCAGGGGGCTTCTGCTTCTGCTTTCTTACCGACATCTTCCCTCC
ACCTATCATCACTGCCCGCCGTGCAGCACGAGCAGCAGAACAGCACCTTT
GGTGTCTATCGATTCAAGCCCGGCGGAGACTTTCTCAGCCTCCTCATCCA
CACCCTGCCCGACCCCATGGCCCCAATCACAGCCGTCCTTCGCACCCCCA
CCCTCCTAACAATTCGACAAGTCCTCAACGACGCCTCCGCTGCGGCCGCA
CACGCAGCAGCTGCTGCCGAGGCAGGCAGTAGTAGCAGCAGTGGCAACAG
CAGCAGCACTAGCAGGGGTAGTCTTCACCATCCCTACCACCACCAGGGCC
AGTATTACTACCATGGCGACGACGACCAGCAGCAGCAGCAGCAGCAGCAG
CAGCCACAGTTATCTCTGCAGCCGCCTTATGGAGTGTGGTGGCGAGTAGA
ATGGCACAACAAGGAGGGGTGGCTGCAAGGGGAAGACCCCATGAAAGGCT
GTCCCTGGCCTTGTCTCGAGCCGGTGAAATCATATCGTTTGTATGAGAGC
TGGAGGGGGGCGCACACCTTTTGGTGTCGAGGAAAAGTGATGCTCGGGCC
GGATTCCACAATTTTTTTCGTAAGCAATCTAATGATTCTCGTGCCGGCTG
TGGTCTTCCTCCTGTTTGTGGGGCCCTCTCTCCCTACTTTGCAGTCGAGT
ATAGCTGTAGAAGCAACAGTGGGGTTGTTGCTGCTTGCGTCGATCTTCTA
CCTGTGGCGCACGGCTTTGCTAGACCCTGGCGTCATTCCAGCCTTGCCTG
CGCATGTCAAGCCCTCTCTCCCTCCCTCAAATTCTGGGGGGCCGAGCGCT
CGCCTTAGTACTGGTGCTGGTGCTGATGCTGATGGTGGCGTTGGTGCTGT
TGGTGGGAGGGGGGGTAGTCCTCCCTCCCCCGCTCCCACGCCGACGACAA
GGTTCTCTCAAGGAGAAGGAGGGGGAAGGGAGGAAGGGGGAAGAGAGAGA
GAAGGGGAGAGAGGGGAAGGACAAGGATTGAATCTTAACGGTTGGCGATA
CTGCGAAACGTGCAACATCTACCGTCCTCCTCGGGCGAAGCATTGTCGCT
CGTGCAATTGCTGCGTGGAAAAGATGGACCATCACTGCGTGTGGGTGGGT
ACATGTGTGGCGAAGCGGAACTATCGCTCCTTTATCCTCTTCCTCCTTAT
GACCTCCACTCTCTCTGTGCTCGTTTTCGCCGCCTGTCTCACAGTCGTTC
TGCGTCATCTGTTGCATGCCCCAGAGCCGGCGGATGCCCTTTGGAAAGTG
GCGGGAGAGTTCCCAGCCGCTGCCGGAGTGGGCGTATTTTGCTTCTTAAT
GTCCTGGTCCTTGGCGTCTTTATGTTCCTACCATTGTTTTTTGATCGCGA
CGGGACAGACGACAAATGAGATGCTGAGACGACGTGGAGGAGGAGGAGGA
GAAGGAGGAGGGAGGGAGCGAGGGGGTTGGTGGGGGAATTTTCTTGGGAT
GTGGAAGGAGAAGGTGGGTCCCAGCATGTTGCCGAGAGATTTTTCAAGGA
TTGTTAGGGTTGGGGAGGGAAGGAAGGAGGGAGGGAGGGGGAGGGGGAAG
ATGGAGGAGGAGAAGGGCCAGTGGGGGCGTAGGAAAGAGAGTGAGGATGA
GACGAGGCGGCGGTTATTAAGTCGGCCGGGGGAGGAAGGGGGGGATGGAT
TGAGGGAGGGGATGGGGGTTGATGATGAGGGAGAAAGGGATGAAGTAGTG
TAG
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Synonyms
Publications