NO08G03140.1, NO08G03140.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G03140.1
Unique NameNO08G03140.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length666
Alignment locationchr8:864326..865381 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:864326..865381 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G03140.1 vs.
Match: EWM26741.1 (hypothetical protein Naga_100001g220 [Nannochloropsis gaditana])

HSP 1 Score: 103.6 bits (257), Expect = 3.300e-19
Identity = 50/65 (76.92%), Postives = 56/65 (86.15%), Query Frame = 0 
Query:    1 MAGPRPTKVLSLRELQMAKRMLKSNKVPACQRELTALLNAMDRKDKGDGNVNIRILQTALEHCLH 66
            M GPRPTKVL++RELQMAKRMLK  K  ACQREL ALL AM+RK+ G+ NVNIR+LQTALEHCLH
Sbjct:    1 MPGPRPTKVLTVRELQMAKRMLKPKKAAACQRELNALLTAMERKENGEANVNIRMLQTALEHCLH 65
The following BLAST results are available for this feature:
BLAST of NO08G03140.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26741.13.300e-1976.92hypothetical protein Naga_100001g220 [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G03140NO08G03140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G03140.1NO08G03140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G03140.1.cds1NO08G03140.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G03140.1.cds2NO08G03140.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G03140.1 ID=NO08G03140.1|Name=NO08G03140.1|organism=Nannochloropsis oceanica|type=mRNA|length=666bp
CAACAGGCACGTGCTAGGTCTCTGGGCGTCACACGCAGCCCTAACCCAAG
CTCCTAGCAAGCCCTCCATTCCCCGGTCCCCGGCCTATCATCATCGAGCG
CCGTCATTCCCTACGCATACTTCCATCTACATACACCAAACCCCAGGATT
AATAATGGCCGGGCCTCGACCAACCAAAGTTCTTTCTCTTCGGGAACTGC
AGATGGCCAAGCGCATGCTCAAAAGTAACAAGGTGCCGGCGTGCCAACGG
GAGCTCACCGCCCTGCTGAACGCTATGGACCGCAAGGACAAGGGAGATGG
GAACGTCAACATTAGAATATTGCAAACCGCTCTGGAGCACTGCTTGCATG
CATCGGACCAGGCTAAGAAGGTGGCTGCGCCGCCGGTGGGCTTAGGCGTG
CTTGCCCGGGCCACCAAGAAGAAGTAGATATTGAGGAACAGGATTGGGCA
GCAACCGCGAAGAAGAAATGGGGTTTGCAGGGGATGTGGAGAAGAGAGAA
ATGCAGGCCTGCGTAGAAAATGTGGGTTTTCGAACCTCGACAACATGTAC
TCACATACCCGCTCCTGTTAGCCGGAGATGAAAGAGCCCTTGAAGAGCCG
ACCTTCCCCCAAATGATACGCCTTACCAAAATGTAAAAAAAGAAACAACA
ATAGAAAAAGGTGTGA
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protein sequence of NO08G03140.1

>NO08G03140.1-protein ID=NO08G03140.1-protein|Name=NO08G03140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=91bp
MAGPRPTKVLSLRELQMAKRMLKSNKVPACQRELTALLNAMDRKDKGDGN
VNIRILQTALEHCLHASDQAKKVAAPPVGLGVLARATKKK*
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mRNA from alignment at chr8:864326..865381+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G03140.1 ID=NO08G03140.1|Name=NO08G03140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1056bp|location=Sequence derived from alignment at chr8:864326..865381+ (Nannochloropsis oceanica)
CAACAGGCACGTGCTAGGTCTCTGGGCGTCACACGCAGCCCTAACCCAAG
CTCCTAGCAAGCCCTCCATTCCCCGGTCCCCGGCCTATCATCATCGAGCG
CCGTCATTCCCTACGCATACTTCCATCTACATACACCAAACCCCAGGATT
AATAATGGCCGGGCCTCGACCAACCAAAGTTCTTTCTCTTCGGGAACTGC
AGATGGCCAAGCGCATGCTCAAAAGTAACAAGGTGCCGGCGTGCCAACGG
GAGCTCACCGCCCTGCTGAACGCTATGGACCGCAAGGACAAGGGAGATGG
GAACGTCAACATTAGAATATTGCAAACCGCTCTGGAGCACTGCTTGCATG
CATCGGTAAATGTCTTGAATGGGATTGTTGGAGGTTGGTCGTGGATGGGG
CTGGATCTTGGGTGGGATATAGTAAAGGCATGTAAATTGGCGTTGGATCT
CGGTAGTTGTGTGCCTGCGCGCCTGGTACCACGATCGAGAATAAGAGGCG
AGAAGGGCGGGGTCAGGACTATTTCAAGATTTGATAGGCTATCGAATTTT
ATAATTTGCATGGCCAGAAGGGGGTTTATGAGAAGATTGAAAACCCCTCC
TATTCTCGAAGATGCTGCTTTCTTTATCCAAGCGTACACATATCGCTTGG
CAGCACTCAGGATGCAGAAATATGAAAAGAATAACCCGCACACTCATTAT
CTGAATTCCAACTCTTCCCCCTTTGACTCATTGAAATCAAAACAGGACCA
GGCTAAGAAGGTGGCTGCGCCGCCGGTGGGCTTAGGCGTGCTTGCCCGGG
CCACCAAGAAGAAGTAGATATTGAGGAACAGGATTGGGCAGCAACCGCGA
AGAAGAAATGGGGTTTGCAGGGGATGTGGAGAAGAGAGAAATGCAGGCCT
GCGTAGAAAATGTGGGTTTTCGAACCTCGACAACATGTACTCACATACCC
GCTCCTGTTAGCCGGAGATGAAAGAGCCCTTGAAGAGCCGACCTTCCCCC
AAATGATACGCCTTACCAAAATGTAAAAAAAGAAACAACAATAGAAAAAG
GTGTGA
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Coding sequence (CDS) from alignment at chr8:864326..865381+

>NO08G03140.1 ID=NO08G03140.1|Name=NO08G03140.1|organism=Nannochloropsis oceanica|type=CDS|length=273bp|location=Sequence derived from alignment at chr8:864326..865381+ (Nannochloropsis oceanica)
ATGGCCGGGCCTCGACCAACCAAAGTTCTTTCTCTTCGGGAACTGCAGAT
GGCCAAGCGCATGCTCAAAAGTAACAAGGTGCCGGCGTGCCAACGGGAGC
TCACCGCCCTGCTGAACGCTATGGACCGCAAGGACAAGGGAGATGGGAAC
GTCAACATTAGAATATTGCAAACCGCTCTGGAGCACTGCTTGCATGCATC
GGACCAGGCTAAGAAGGTGGCTGCGCCGCCGGTGGGCTTAGGCGTGCTTG
CCCGGGCCACCAAGAAGAAGTAG
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Synonyms
Publications