NO08G03110.1, NO08G03110.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G03110.1
Unique NameNO08G03110.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1371
Alignment locationchr8:858220..859797 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:858220..859797 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO08G03110.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G03110NO08G03110Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G03110.1NO08G03110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G03110.1.cds1NO08G03110.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G03110.1.cds2NO08G03110.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G03110.1 ID=NO08G03110.1|Name=NO08G03110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1371bp
ATGGACGCTGCTGCCAAGAAGGGCGAAGCACCCCCTCCGGCCCCGGCCAC
AACCACGGCGGAAGTATCCCCTAGTATAGGGATTCGCGAGGCGGAAGCGG
GAAGCGGGGGGAAAGGAGCCGGAGGCCGGTCCAGCAAGGAAGAGGGAGTG
GAGAACCCGTTGTCGTTGGCCATCGAGGAAGGAGGCGAAGGAGAAGGCAT
GGCACGGGGCGAGCAGCAGCAGCAGCAGGAGCCGCCACCGCCGCAGGATG
TTGTAGAGGAAAAATGGGCAGAGGAGCGGAAGGAGGGTGGTGAATCGATT
GCCGGCGGTATTCGCAGCCGTGTCAACAGTGGCGGGAGGGACGAAGTCCT
GAAAGGCGATGGAGGGGGCGTCAGAGCAGACCCATCATGTGCGTTGCCTC
GTGGACCATCATCACAGGTAGAGCTCCCGGAGCAGCAGCCGCAGCCATCA
TCAATGCAACCGCCCATGCGTCCTCCCCCGCCCCCTCAACAACCACAACA
TCAACACCACCAACCACCACCACCACCACAACCACAACAGCACCATTATC
AACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCACAAGAACTAAGTCGC
CACCCCATCGCGCAGCAACATGAGGCCCACGCCCCCATGCGGCCTTATGA
GCAGCAGGAGAGACAAGGAGGAGAACAACAAGTTCACCTACAGCAACAGC
AGCAACAGCAGCAACAGCAACTCCTCAACCTTCAAAGGCAACTCCAAGCT
CACCGCGCCCAGCAAGAAGCAGCAGCAGCAGCAGCACAACAACAACAACA
GCAGCACCAGCAGCAGCAGGCCGCTCGATTCAATAACCACTCCTCTTCCT
CTCAACTGTATCAGTACCACCACCAGCAGCAGCAGCAGCAGCAGCCGCAG
CCGCAACGAATTCTTCCTCACTCGTCGATTTTACCCACAGACGCCCAACA
GCTACAACAGCCGCCACAACAATCTTCCGTGCAGTCAGTTCCTCCCCCCT
TCTCCCAGAGCTATTTTCCCCCTCCCTCGCATGTGGTGGCGGCCGCGCGT
ACCCAAAGCGCGAGCAATCGTTACTTCCCCCCTCCCTCCCACGTCGTTGC
AGCCGCACGTGCCCAAAGCAATAGCGCCAACGGAGGAGGAGAAAACGGGA
GCAGCAGTAGCATCAGCAGCAGCAGCAGTGGTGGTAATAGCGGTCCTCAT
GAAGGCGAAGTCTACATCTCTGTTCGTGATCGATATGGCAGTGGCGGAGG
AGGAGGAGAAGGGGGGGGGGGGGAGGGAATGGAGGAAGAGGGGGGTTCCA
CCATCCCATGTCTTCTCATCATCAGGCTTACCCCCAGCATCCGCACCACC
AGCCTTCGCATACACATGTGA
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protein sequence of NO08G03110.1

>NO08G03110.1-protein ID=NO08G03110.1-protein|Name=NO08G03110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=457bp
MDAAAKKGEAPPPAPATTTAEVSPSIGIREAEAGSGGKGAGGRSSKEEGV
ENPLSLAIEEGGEGEGMARGEQQQQQEPPPPQDVVEEKWAEERKEGGESI
AGGIRSRVNSGGRDEVLKGDGGGVRADPSCALPRGPSSQVELPEQQPQPS
SMQPPMRPPPPPQQPQHQHHQPPPPPQPQQHHYQQQQQQQQQQQPQELSR
HPIAQQHEAHAPMRPYEQQERQGGEQQVHLQQQQQQQQQQLLNLQRQLQA
HRAQQEAAAAAAQQQQQQHQQQQAARFNNHSSSSQLYQYHHQQQQQQQPQ
PQRILPHSSILPTDAQQLQQPPQQSSVQSVPPPFSQSYFPPPSHVVAAAR
TQSASNRYFPPPSHVVAAARAQSNSANGGGENGSSSSISSSSSGGNSGPH
EGEVYISVRDRYGSGGGGGEGGGGEGMEEEGGSTIPCLLIIRLTPSIRTT
SLRIHM*
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mRNA from alignment at chr8:858220..859797-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G03110.1 ID=NO08G03110.1|Name=NO08G03110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1578bp|location=Sequence derived from alignment at chr8:858220..859797- (Nannochloropsis oceanica)
ATGGACGCTGCTGCCAAGAAGGGCGAAGCACCCCCTCCGGCCCCGGCCAC
AACCACGGTACGCAAAGCCAGGTTATCAGCAAGGGTCTGTGATAGTTTTG
GATACCTGGGAAAGGGCAAGCGGGGTGGGTGAGAATTGATTGTAGATGTG
TCCTGGCTCCCGTCCTGCTGGCCTCGAGGCTTGTTATGTCCTCCTTCCAC
TACGTCTCGTTTGGACACCTTTTGCTCACCTCATCCCTCGCGATCCTCAC
CCCGTCGCACACAGGCGGAAGTATCCCCTAGTATAGGGATTCGCGAGGCG
GAAGCGGGAAGCGGGGGGAAAGGAGCCGGAGGCCGGTCCAGCAAGGAAGA
GGGAGTGGAGAACCCGTTGTCGTTGGCCATCGAGGAAGGAGGCGAAGGAG
AAGGCATGGCACGGGGCGAGCAGCAGCAGCAGCAGGAGCCGCCACCGCCG
CAGGATGTTGTAGAGGAAAAATGGGCAGAGGAGCGGAAGGAGGGTGGTGA
ATCGATTGCCGGCGGTATTCGCAGCCGTGTCAACAGTGGCGGGAGGGACG
AAGTCCTGAAAGGCGATGGAGGGGGCGTCAGAGCAGACCCATCATGTGCG
TTGCCTCGTGGACCATCATCACAGGTAGAGCTCCCGGAGCAGCAGCCGCA
GCCATCATCAATGCAACCGCCCATGCGTCCTCCCCCGCCCCCTCAACAAC
CACAACATCAACACCACCAACCACCACCACCACCACAACCACAACAGCAC
CATTATCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCACAAGAACT
AAGTCGCCACCCCATCGCGCAGCAACATGAGGCCCACGCCCCCATGCGGC
CTTATGAGCAGCAGGAGAGACAAGGAGGAGAACAACAAGTTCACCTACAG
CAACAGCAGCAACAGCAGCAACAGCAACTCCTCAACCTTCAAAGGCAACT
CCAAGCTCACCGCGCCCAGCAAGAAGCAGCAGCAGCAGCAGCACAACAAC
AACAACAGCAGCACCAGCAGCAGCAGGCCGCTCGATTCAATAACCACTCC
TCTTCCTCTCAACTGTATCAGTACCACCACCAGCAGCAGCAGCAGCAGCA
GCCGCAGCCGCAACGAATTCTTCCTCACTCGTCGATTTTACCCACAGACG
CCCAACAGCTACAACAGCCGCCACAACAATCTTCCGTGCAGTCAGTTCCT
CCCCCCTTCTCCCAGAGCTATTTTCCCCCTCCCTCGCATGTGGTGGCGGC
CGCGCGTACCCAAAGCGCGAGCAATCGTTACTTCCCCCCTCCCTCCCACG
TCGTTGCAGCCGCACGTGCCCAAAGCAATAGCGCCAACGGAGGAGGAGAA
AACGGGAGCAGCAGTAGCATCAGCAGCAGCAGCAGTGGTGGTAATAGCGG
TCCTCATGAAGGCGAAGTCTACATCTCTGTTCGTGATCGATATGGCAGTG
GCGGAGGAGGAGGAGAAGGGGGGGGGGGGGAGGGAATGGAGGAAGAGGGG
GGTTCCACCATCCCATGTCTTCTCATCATCAGGCTTACCCCCAGCATCCG
CACCACCAGCCTTCGCATACACATGTGA
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Coding sequence (CDS) from alignment at chr8:858220..859797-

>NO08G03110.1 ID=NO08G03110.1|Name=NO08G03110.1|organism=Nannochloropsis oceanica|type=CDS|length=1371bp|location=Sequence derived from alignment at chr8:858220..859797- (Nannochloropsis oceanica)
ATGGACGCTGCTGCCAAGAAGGGCGAAGCACCCCCTCCGGCCCCGGCCAC
AACCACGGCGGAAGTATCCCCTAGTATAGGGATTCGCGAGGCGGAAGCGG
GAAGCGGGGGGAAAGGAGCCGGAGGCCGGTCCAGCAAGGAAGAGGGAGTG
GAGAACCCGTTGTCGTTGGCCATCGAGGAAGGAGGCGAAGGAGAAGGCAT
GGCACGGGGCGAGCAGCAGCAGCAGCAGGAGCCGCCACCGCCGCAGGATG
TTGTAGAGGAAAAATGGGCAGAGGAGCGGAAGGAGGGTGGTGAATCGATT
GCCGGCGGTATTCGCAGCCGTGTCAACAGTGGCGGGAGGGACGAAGTCCT
GAAAGGCGATGGAGGGGGCGTCAGAGCAGACCCATCATGTGCGTTGCCTC
GTGGACCATCATCACAGGTAGAGCTCCCGGAGCAGCAGCCGCAGCCATCA
TCAATGCAACCGCCCATGCGTCCTCCCCCGCCCCCTCAACAACCACAACA
TCAACACCACCAACCACCACCACCACCACAACCACAACAGCACCATTATC
AACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCACAAGAACTAAGTCGC
CACCCCATCGCGCAGCAACATGAGGCCCACGCCCCCATGCGGCCTTATGA
GCAGCAGGAGAGACAAGGAGGAGAACAACAAGTTCACCTACAGCAACAGC
AGCAACAGCAGCAACAGCAACTCCTCAACCTTCAAAGGCAACTCCAAGCT
CACCGCGCCCAGCAAGAAGCAGCAGCAGCAGCAGCACAACAACAACAACA
GCAGCACCAGCAGCAGCAGGCCGCTCGATTCAATAACCACTCCTCTTCCT
CTCAACTGTATCAGTACCACCACCAGCAGCAGCAGCAGCAGCAGCCGCAG
CCGCAACGAATTCTTCCTCACTCGTCGATTTTACCCACAGACGCCCAACA
GCTACAACAGCCGCCACAACAATCTTCCGTGCAGTCAGTTCCTCCCCCCT
TCTCCCAGAGCTATTTTCCCCCTCCCTCGCATGTGGTGGCGGCCGCGCGT
ACCCAAAGCGCGAGCAATCGTTACTTCCCCCCTCCCTCCCACGTCGTTGC
AGCCGCACGTGCCCAAAGCAATAGCGCCAACGGAGGAGGAGAAAACGGGA
GCAGCAGTAGCATCAGCAGCAGCAGCAGTGGTGGTAATAGCGGTCCTCAT
GAAGGCGAAGTCTACATCTCTGTTCGTGATCGATATGGCAGTGGCGGAGG
AGGAGGAGAAGGGGGGGGGGGGGAGGGAATGGAGGAAGAGGGGGGTTCCA
CCATCCCATGTCTTCTCATCATCAGGCTTACCCCCAGCATCCGCACCACC
AGCCTTCGCATACACATGTGA
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Synonyms
Publications