NO08G02970.1, NO08G02970.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G02970.1
Unique NameNO08G02970.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1815
Alignment locationchr8:827617..829431 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:827617..829431 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO08G02970.1 vs.
Match: EWM26705.1 (hypothetical protein Naga_100001g205 [Nannochloropsis gaditana])

HSP 1 Score: 246.5 bits (628), Expect = 1.400e-61
Identity = 141/291 (48.45%), Postives = 192/291 (65.98%), Query Frame = 0 
Query:   19 DENDDDDVLILAPPVSSRDEGAGGGFVFADTRTCWDLEVWIQGALFTQSSACPMDNYGAFVTASIAGKSVSTANADPFGSSVMWNEKLSLGCHIKNEPLVFRLYAGENAKSAPCAQWTMKDWLAEAALNDVPVGGPEENVLTNSVVFLG-RANLMVQLASFVHHDPPPQKGIISLDDFSFDGGESIGGLIGGVLLIMFIVFVSLWCCCICCCPRTYQERRRRLWVTS---------GASTAAVATTSRPPPPP---SRPPPPPPLPPSVSCPRPTPPPPPF--SSPWYSRP 295
            D++D+D++ +      +RD    G F+FA+TRTCWDL+VW++GA+ + SS CP     +FV+ SI G S+S+ +     S  +WN++LSLGCH+ N PL  +LY G N +  PC +W M DWLA+AALND+PVGGPEE+V +N++  LG RA LM++LAS++HHDPP ++G ++LDDF+   G+ IGGLIGG +L + IVFV +WCCC CCCPR YQ   RRLW+ S         G +  A A+TSRP PPP   SR   PP  PP +    P+PPP  F  + P Y  P
Sbjct:   48 DDDDEDEMQVFM----TRD----GDFIFAETRTCWDLDVWLKGAMISHSS-CPTSEGPSFVSVSIGGTSLSSRSLGAGISVPVWNQRLSLGCHLSNVPLKIQLYTGGNQR-VPCTEWVMPDWLAQAALNDMPVGGPEEDVQSNTIPLLGGRATLMIELASYIHHDPPAKRGPVALDDFTLSSGKVIGGLIGGFILTILIVFVCMWCCCSCCCPRVYQ--GRRLWLRSILSRSSNAIGTAAQANASTSRPIPPPTTTSRAHFPPAPPPHL----PSPPPSRFLNNRPTYLNP 322
The following BLAST results are available for this feature:
BLAST of NO08G02970.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26705.11.400e-6148.45hypothetical protein Naga_100001g205 [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G02970NO08G02970Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G02970.1NO08G02970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G02970.1.cds1NO08G02970.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G02970.1 ID=NO08G02970.1|Name=NO08G02970.1|organism=Nannochloropsis oceanica|type=mRNA|length=1815bp
TGTAAACGGAAGTTCTTCTTCCATCCCATGACGCGCGTGCTTCTTTTCCC
ACGCATTTGCCTTGTTTGTGGAGCAACTCTCCCCTCGCCCACGCATAATG
ACATATCAGAGCTAATGTTTGATTTGGATGCGGTGGACAAGCCTGAATAA
CGCATGTTGGCTTGCTTCATCTTAGCTCCTCAGCGGCTGCGATGTGTCGA
CCCCCGGTCTTGCATCCACGCGGACTACACGAGCCTACGCGATTTATCAT
TCCATTGTTACCCTTTGGCTGCACAGGACGTGCACCTACCCATGCGCCCC
CCCTTAGCTTCCCGTCCCATCCACTCTGTGGAAAGCAGCGCGTACTTGCT
CTGGGCCTTGCATTTTCCTGTCTCTGGATGGCTTCACTCATACTCAAGGC
CTCCATTATCGAGCTCTTAATGTGGTCTGTCTTCTGTCTTACCCACTTAC
CCCATTCATCCCTTACCCACGACAAACAGGATGGGGGGAAGCAAAGGCCA
TCATCCGCATCCCCACCAAGACCGCGGGGAGATAGATGAAAATGACGACG
ATGACGTTCTTATCCTTGCCCCACCTGTGAGCAGCAGGGACGAAGGGGCA
GGTGGTGGCTTTGTTTTTGCCGATACTCGGACCTGTTGGGACCTCGAGGT
TTGGATACAGGGCGCCTTGTTCACGCAAAGCTCCGCCTGCCCTATGGACA
ATTACGGCGCATTTGTGACAGCCTCCATAGCCGGCAAGTCTGTGAGCACC
GCGAATGCTGATCCATTCGGCTCGTCTGTCATGTGGAACGAGAAGCTATC
TCTGGGCTGCCACATCAAAAATGAGCCTCTGGTTTTTCGATTGTATGCTG
GCGAGAATGCCAAGTCGGCGCCTTGTGCACAGTGGACAATGAAAGATTGG
CTTGCCGAAGCGGCACTAAATGATGTACCTGTCGGAGGTCCCGAAGAAAA
CGTGCTTACCAATTCCGTTGTTTTCCTTGGCCGTGCGAATCTGATGGTAC
AACTTGCCTCCTTCGTCCATCATGACCCGCCTCCCCAAAAAGGTATCATC
TCCTTAGACGACTTTTCATTTGATGGTGGCGAAAGCATCGGTGGTTTGAT
TGGTGGAGTGCTCCTCATCATGTTCATCGTTTTTGTCTCCCTGTGGTGCT
GTTGCATTTGCTGCTGTCCCCGGACATATCAAGAGCGCCGGCGTCGATTA
TGGGTGACCAGTGGAGCCTCAACAGCAGCAGTGGCAACTACTTCTCGCCC
TCCTCCTCCTCCTTCTCGCCCTCCTCCTCCCCCCCCCCTTCCTCCTTCTG
TATCTTGCCCACGTCCTACTCCACCACCCCCACCTTTTTCTTCACCTTGG
TATAGTCGTCCTCCCCCTTTCGCTACCAGCAGCAACAACAACAGCTGCAG
CAATAGCAGGAGCAATAACAACACCGGTGGTGGTGGTCTTTTCTCAACTT
TCTATGGACGCCCCCAGCCATATGTCCCTTCTGCTTCTGCTCCTTTTGCT
TATGTTCAATCACATCCACAGCAGCAACAGCAACGGCAGCCATCACAGGT
AGCTGTTGCCATGCCTGTGGCTGAAGCCATCGGTACCTCGAACCGAGAAG
GGGGAGGAAATGTGCCTTTAGCGGAGGCAAGGGTCATGACGAGCTTTAAT
GCTGGAGGCGGAGGAGGGAGGATGGGAGAAGGAGGAGGAGGGAGGCAGGA
CCGGGGACGGAAGTTTAGTGTTTAAATAAATGAAAAAGAAGGGAATGAAC
AAAGTATTTGCATTGAATTCACTGACAGGGCTCGAAATGAATATGCACGA
TTGGCTCTGTCTGGC
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protein sequence of NO08G02970.1

>NO08G02970.1-protein ID=NO08G02970.1-protein|Name=NO08G02970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=415bp
MGGSKGHHPHPHQDRGEIDENDDDDVLILAPPVSSRDEGAGGGFVFADTR
TCWDLEVWIQGALFTQSSACPMDNYGAFVTASIAGKSVSTANADPFGSSV
MWNEKLSLGCHIKNEPLVFRLYAGENAKSAPCAQWTMKDWLAEAALNDVP
VGGPEENVLTNSVVFLGRANLMVQLASFVHHDPPPQKGIISLDDFSFDGG
ESIGGLIGGVLLIMFIVFVSLWCCCICCCPRTYQERRRRLWVTSGASTAA
VATTSRPPPPPSRPPPPPPLPPSVSCPRPTPPPPPFSSPWYSRPPPFATS
SNNNSCSNSRSNNNTGGGGLFSTFYGRPQPYVPSASAPFAYVQSHPQQQQ
QRQPSQVAVAMPVAEAIGTSNREGGGNVPLAEARVMTSFNAGGGGGRMGE
GGGGRQDRGRKFSV*
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mRNA from alignment at chr8:827617..829431-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G02970.1 ID=NO08G02970.1|Name=NO08G02970.1|organism=Nannochloropsis oceanica|type=mRNA|length=1815bp|location=Sequence derived from alignment at chr8:827617..829431- (Nannochloropsis oceanica)
TGTAAACGGAAGTTCTTCTTCCATCCCATGACGCGCGTGCTTCTTTTCCC
ACGCATTTGCCTTGTTTGTGGAGCAACTCTCCCCTCGCCCACGCATAATG
ACATATCAGAGCTAATGTTTGATTTGGATGCGGTGGACAAGCCTGAATAA
CGCATGTTGGCTTGCTTCATCTTAGCTCCTCAGCGGCTGCGATGTGTCGA
CCCCCGGTCTTGCATCCACGCGGACTACACGAGCCTACGCGATTTATCAT
TCCATTGTTACCCTTTGGCTGCACAGGACGTGCACCTACCCATGCGCCCC
CCCTTAGCTTCCCGTCCCATCCACTCTGTGGAAAGCAGCGCGTACTTGCT
CTGGGCCTTGCATTTTCCTGTCTCTGGATGGCTTCACTCATACTCAAGGC
CTCCATTATCGAGCTCTTAATGTGGTCTGTCTTCTGTCTTACCCACTTAC
CCCATTCATCCCTTACCCACGACAAACAGGATGGGGGGAAGCAAAGGCCA
TCATCCGCATCCCCACCAAGACCGCGGGGAGATAGATGAAAATGACGACG
ATGACGTTCTTATCCTTGCCCCACCTGTGAGCAGCAGGGACGAAGGGGCA
GGTGGTGGCTTTGTTTTTGCCGATACTCGGACCTGTTGGGACCTCGAGGT
TTGGATACAGGGCGCCTTGTTCACGCAAAGCTCCGCCTGCCCTATGGACA
ATTACGGCGCATTTGTGACAGCCTCCATAGCCGGCAAGTCTGTGAGCACC
GCGAATGCTGATCCATTCGGCTCGTCTGTCATGTGGAACGAGAAGCTATC
TCTGGGCTGCCACATCAAAAATGAGCCTCTGGTTTTTCGATTGTATGCTG
GCGAGAATGCCAAGTCGGCGCCTTGTGCACAGTGGACAATGAAAGATTGG
CTTGCCGAAGCGGCACTAAATGATGTACCTGTCGGAGGTCCCGAAGAAAA
CGTGCTTACCAATTCCGTTGTTTTCCTTGGCCGTGCGAATCTGATGGTAC
AACTTGCCTCCTTCGTCCATCATGACCCGCCTCCCCAAAAAGGTATCATC
TCCTTAGACGACTTTTCATTTGATGGTGGCGAAAGCATCGGTGGTTTGAT
TGGTGGAGTGCTCCTCATCATGTTCATCGTTTTTGTCTCCCTGTGGTGCT
GTTGCATTTGCTGCTGTCCCCGGACATATCAAGAGCGCCGGCGTCGATTA
TGGGTGACCAGTGGAGCCTCAACAGCAGCAGTGGCAACTACTTCTCGCCC
TCCTCCTCCTCCTTCTCGCCCTCCTCCTCCCCCCCCCCTTCCTCCTTCTG
TATCTTGCCCACGTCCTACTCCACCACCCCCACCTTTTTCTTCACCTTGG
TATAGTCGTCCTCCCCCTTTCGCTACCAGCAGCAACAACAACAGCTGCAG
CAATAGCAGGAGCAATAACAACACCGGTGGTGGTGGTCTTTTCTCAACTT
TCTATGGACGCCCCCAGCCATATGTCCCTTCTGCTTCTGCTCCTTTTGCT
TATGTTCAATCACATCCACAGCAGCAACAGCAACGGCAGCCATCACAGGT
AGCTGTTGCCATGCCTGTGGCTGAAGCCATCGGTACCTCGAACCGAGAAG
GGGGAGGAAATGTGCCTTTAGCGGAGGCAAGGGTCATGACGAGCTTTAAT
GCTGGAGGCGGAGGAGGGAGGATGGGAGAAGGAGGAGGAGGGAGGCAGGA
CCGGGGACGGAAGTTTAGTGTTTAAATAAATGAAAAAGAAGGGAATGAAC
AAAGTATTTGCATTGAATTCACTGACAGGGCTCGAAATGAATATGCACGA
TTGGCTCTGTCTGGC
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Coding sequence (CDS) from alignment at chr8:827617..829431-

>NO08G02970.1 ID=NO08G02970.1|Name=NO08G02970.1|organism=Nannochloropsis oceanica|type=CDS|length=1245bp|location=Sequence derived from alignment at chr8:827617..829431- (Nannochloropsis oceanica)
ATGGGGGGAAGCAAAGGCCATCATCCGCATCCCCACCAAGACCGCGGGGA
GATAGATGAAAATGACGACGATGACGTTCTTATCCTTGCCCCACCTGTGA
GCAGCAGGGACGAAGGGGCAGGTGGTGGCTTTGTTTTTGCCGATACTCGG
ACCTGTTGGGACCTCGAGGTTTGGATACAGGGCGCCTTGTTCACGCAAAG
CTCCGCCTGCCCTATGGACAATTACGGCGCATTTGTGACAGCCTCCATAG
CCGGCAAGTCTGTGAGCACCGCGAATGCTGATCCATTCGGCTCGTCTGTC
ATGTGGAACGAGAAGCTATCTCTGGGCTGCCACATCAAAAATGAGCCTCT
GGTTTTTCGATTGTATGCTGGCGAGAATGCCAAGTCGGCGCCTTGTGCAC
AGTGGACAATGAAAGATTGGCTTGCCGAAGCGGCACTAAATGATGTACCT
GTCGGAGGTCCCGAAGAAAACGTGCTTACCAATTCCGTTGTTTTCCTTGG
CCGTGCGAATCTGATGGTACAACTTGCCTCCTTCGTCCATCATGACCCGC
CTCCCCAAAAAGGTATCATCTCCTTAGACGACTTTTCATTTGATGGTGGC
GAAAGCATCGGTGGTTTGATTGGTGGAGTGCTCCTCATCATGTTCATCGT
TTTTGTCTCCCTGTGGTGCTGTTGCATTTGCTGCTGTCCCCGGACATATC
AAGAGCGCCGGCGTCGATTATGGGTGACCAGTGGAGCCTCAACAGCAGCA
GTGGCAACTACTTCTCGCCCTCCTCCTCCTCCTTCTCGCCCTCCTCCTCC
CCCCCCCCTTCCTCCTTCTGTATCTTGCCCACGTCCTACTCCACCACCCC
CACCTTTTTCTTCACCTTGGTATAGTCGTCCTCCCCCTTTCGCTACCAGC
AGCAACAACAACAGCTGCAGCAATAGCAGGAGCAATAACAACACCGGTGG
TGGTGGTCTTTTCTCAACTTTCTATGGACGCCCCCAGCCATATGTCCCTT
CTGCTTCTGCTCCTTTTGCTTATGTTCAATCACATCCACAGCAGCAACAG
CAACGGCAGCCATCACAGGTAGCTGTTGCCATGCCTGTGGCTGAAGCCAT
CGGTACCTCGAACCGAGAAGGGGGAGGAAATGTGCCTTTAGCGGAGGCAA
GGGTCATGACGAGCTTTAATGCTGGAGGCGGAGGAGGGAGGATGGGAGAA
GGAGGAGGAGGGAGGCAGGACCGGGGACGGAAGTTTAGTGTTTAA
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Synonyms
Publications