NO08G02810.1, NO08G02810.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G02810.1
Unique NameNO08G02810.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1122
Alignment locationchr8:792215..793336 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:792215..793336 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G02810.1 vs.
Match: EWM26656.1 (protein myg1 [Nannochloropsis gaditana])

HSP 1 Score: 493.8 bits (1270), Expect = 4.700e-136
Identity = 229/356 (64.33%), Postives = 281/356 (78.93%), Query Frame = 0 
Query:   15 LEHQPSNNTKAVIASDIPLAAAGPVIGTHDGTFHCDEVLAISMLRLLPAYKESVVVRTRDPTKLAQCQIVVDVGAEYDASGLRFDHHQRGFEHTLGDKFKTKLSSAGLVYKHFGRDMLRVMVVSSGAAATFNTEEGVKEEDLMLDKLYIKTYLDFVEHIDGIDNGINIAEGNLRYTVQTHLPGRVATLNPAWNEDDSANALNERFADALAMVSTEFINFVGYLCKSWWPARQRVAEGFQGRFTVHPSGKILHLMTYCPWQDHLFDLELDAGVPGQVLYVLYADSKGSSVRIHAVPDRVGSFALRLAMPEAWRGLRNEVLGAAVGGIPGCIFVHANGFIGGNATLEGAMEMAKLALT 371
            L+H    ++  VI S++P   + P+IGTHDGTFHCDEVLAISMLRLLP Y  +VVVRTRD  KLAQC IV+DVG EYDA  LRFDHHQRGF+ TLG+ +KTKLSSAGLVYKHFG+DMLR ++ +S A     T+      + M++KL+ KTY DF+EHIDGIDNGI++AE +LRY +QTHLPGRVA LN AWN+D SA++LN RF+ AL+MV+ EF++   YLC SWWPAR+ VA+ F+ R  VHPSGK+LHL +YCPWQDHLF+LE + G+PG +LYVLY D KGSSVRIHAVP+++GSF LR  +PE WRGLR+E+L  AVGG+ GC FVHANGFIGGN TL GAM+M   AL+
Sbjct:   14 LKHPSDASSSPVIVSEVPTGVSCPIIGTHDGTFHCDEVLAISMLRLLPTYHNAVVVRTRDKAKLAQCTIVLDVGGEYDAVRLRFDHHQRGFDETLGEGYKTKLSSAGLVYKHFGKDMLRHLIATSVAP----TQMSSACIENMVEKLFTKTYFDFIEHIDGIDNGIDVAESDLRYKIQTHLPGRVAKLNSAWNQDGSADSLNTRFSRALSMVTAEFVDTFMYLCNSWWPARRIVAQAFEERNAVHPSGKVLHLSSYCPWQDHLFELEQEVGLPGHILYVLYGDPKGSSVRIHAVPEKIGSFLLRAPLPEPWRGLRDEMLDDAVGGVQGCTFVHANGFIGGNKTLNGAMKMVNKALS 365
The following BLAST results are available for this feature:
BLAST of NO08G02810.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26656.14.700e-13664.33protein myg1 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G02810NO08G02810Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G02810.1NO08G02810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G02810.1.cds1NO08G02810.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G02810.1 ID=NO08G02810.1|Name=NO08G02810.1|organism=Nannochloropsis oceanica|type=mRNA|length=1122bp
ATGACGAACCCTACCGGCGCGACTCCAGCCAAGAAGCCGTGCCTCGAGCA
CCAGCCGTCAAATAATACCAAGGCGGTAATCGCCTCGGACATACCCTTGG
CAGCCGCCGGCCCCGTCATCGGCACGCACGATGGTACATTTCACTGCGAC
GAAGTCTTGGCCATCTCCATGCTCCGTCTCCTGCCCGCCTACAAAGAGTC
GGTGGTGGTCAGGACGCGCGACCCCACGAAGCTTGCCCAGTGTCAAATCG
TCGTGGACGTCGGGGCTGAGTACGACGCCAGCGGCCTCCGATTCGATCAT
CACCAGCGGGGATTTGAGCATACGTTGGGGGATAAATTTAAGACCAAGCT
GTCGAGTGCCGGCCTCGTCTACAAGCATTTCGGACGGGACATGCTCCGGG
TCATGGTGGTCTCCTCGGGGGCGGCAGCGACCTTTAATACGGAAGAGGGC
GTGAAAGAAGAGGACCTGATGCTGGACAAGCTGTACATCAAGACGTACCT
AGACTTTGTGGAGCATATTGATGGGATTGACAACGGCATCAACATCGCGG
AGGGCAATCTCCGGTATACGGTCCAGACGCACTTGCCCGGTCGCGTCGCC
ACTCTGAACCCGGCCTGGAATGAAGACGATTCCGCTAACGCATTGAACGA
GAGGTTTGCCGACGCCTTGGCTATGGTCAGTACGGAGTTTATCAATTTTG
TTGGATATCTATGTAAGTCTTGGTGGCCGGCTCGGCAGCGTGTGGCCGAG
GGGTTTCAGGGTCGTTTCACGGTTCATCCGAGTGGCAAGATTCTGCATTT
GATGACGTACTGTCCTTGGCAAGACCATTTATTTGACCTAGAACTAGACG
CAGGCGTGCCGGGACAGGTTCTGTACGTTTTGTATGCCGACTCCAAGGGC
AGCTCGGTGAGAATACATGCTGTTCCTGACAGGGTGGGGTCGTTTGCTCT
GCGGTTGGCAATGCCCGAGGCTTGGCGAGGTTTAAGAAACGAGGTCTTGG
GAGCAGCTGTGGGTGGGATTCCGGGTTGTATTTTCGTTCATGCCAATGGC
TTCATTGGAGGAAATGCGACATTGGAGGGGGCGATGGAGATGGCCAAGTT
GGCGTTGACTTATGTGGTTTAG
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protein sequence of NO08G02810.1

>NO08G02810.1-protein ID=NO08G02810.1-protein|Name=NO08G02810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=374bp
MTNPTGATPAKKPCLEHQPSNNTKAVIASDIPLAAAGPVIGTHDGTFHCD
EVLAISMLRLLPAYKESVVVRTRDPTKLAQCQIVVDVGAEYDASGLRFDH
HQRGFEHTLGDKFKTKLSSAGLVYKHFGRDMLRVMVVSSGAAATFNTEEG
VKEEDLMLDKLYIKTYLDFVEHIDGIDNGINIAEGNLRYTVQTHLPGRVA
TLNPAWNEDDSANALNERFADALAMVSTEFINFVGYLCKSWWPARQRVAE
GFQGRFTVHPSGKILHLMTYCPWQDHLFDLELDAGVPGQVLYVLYADSKG
SSVRIHAVPDRVGSFALRLAMPEAWRGLRNEVLGAAVGGIPGCIFVHANG
FIGGNATLEGAMEMAKLALTYVV*
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mRNA from alignment at chr8:792215..793336-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G02810.1 ID=NO08G02810.1|Name=NO08G02810.1|organism=Nannochloropsis oceanica|type=mRNA|length=1122bp|location=Sequence derived from alignment at chr8:792215..793336- (Nannochloropsis oceanica)
ATGACGAACCCTACCGGCGCGACTCCAGCCAAGAAGCCGTGCCTCGAGCA
CCAGCCGTCAAATAATACCAAGGCGGTAATCGCCTCGGACATACCCTTGG
CAGCCGCCGGCCCCGTCATCGGCACGCACGATGGTACATTTCACTGCGAC
GAAGTCTTGGCCATCTCCATGCTCCGTCTCCTGCCCGCCTACAAAGAGTC
GGTGGTGGTCAGGACGCGCGACCCCACGAAGCTTGCCCAGTGTCAAATCG
TCGTGGACGTCGGGGCTGAGTACGACGCCAGCGGCCTCCGATTCGATCAT
CACCAGCGGGGATTTGAGCATACGTTGGGGGATAAATTTAAGACCAAGCT
GTCGAGTGCCGGCCTCGTCTACAAGCATTTCGGACGGGACATGCTCCGGG
TCATGGTGGTCTCCTCGGGGGCGGCAGCGACCTTTAATACGGAAGAGGGC
GTGAAAGAAGAGGACCTGATGCTGGACAAGCTGTACATCAAGACGTACCT
AGACTTTGTGGAGCATATTGATGGGATTGACAACGGCATCAACATCGCGG
AGGGCAATCTCCGGTATACGGTCCAGACGCACTTGCCCGGTCGCGTCGCC
ACTCTGAACCCGGCCTGGAATGAAGACGATTCCGCTAACGCATTGAACGA
GAGGTTTGCCGACGCCTTGGCTATGGTCAGTACGGAGTTTATCAATTTTG
TTGGATATCTATGTAAGTCTTGGTGGCCGGCTCGGCAGCGTGTGGCCGAG
GGGTTTCAGGGTCGTTTCACGGTTCATCCGAGTGGCAAGATTCTGCATTT
GATGACGTACTGTCCTTGGCAAGACCATTTATTTGACCTAGAACTAGACG
CAGGCGTGCCGGGACAGGTTCTGTACGTTTTGTATGCCGACTCCAAGGGC
AGCTCGGTGAGAATACATGCTGTTCCTGACAGGGTGGGGTCGTTTGCTCT
GCGGTTGGCAATGCCCGAGGCTTGGCGAGGTTTAAGAAACGAGGTCTTGG
GAGCAGCTGTGGGTGGGATTCCGGGTTGTATTTTCGTTCATGCCAATGGC
TTCATTGGAGGAAATGCGACATTGGAGGGGGCGATGGAGATGGCCAAGTT
GGCGTTGACTTATGTGGTTTAG
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Coding sequence (CDS) from alignment at chr8:792215..793336-

>NO08G02810.1 ID=NO08G02810.1|Name=NO08G02810.1|organism=Nannochloropsis oceanica|type=CDS|length=1122bp|location=Sequence derived from alignment at chr8:792215..793336- (Nannochloropsis oceanica)
ATGACGAACCCTACCGGCGCGACTCCAGCCAAGAAGCCGTGCCTCGAGCA
CCAGCCGTCAAATAATACCAAGGCGGTAATCGCCTCGGACATACCCTTGG
CAGCCGCCGGCCCCGTCATCGGCACGCACGATGGTACATTTCACTGCGAC
GAAGTCTTGGCCATCTCCATGCTCCGTCTCCTGCCCGCCTACAAAGAGTC
GGTGGTGGTCAGGACGCGCGACCCCACGAAGCTTGCCCAGTGTCAAATCG
TCGTGGACGTCGGGGCTGAGTACGACGCCAGCGGCCTCCGATTCGATCAT
CACCAGCGGGGATTTGAGCATACGTTGGGGGATAAATTTAAGACCAAGCT
GTCGAGTGCCGGCCTCGTCTACAAGCATTTCGGACGGGACATGCTCCGGG
TCATGGTGGTCTCCTCGGGGGCGGCAGCGACCTTTAATACGGAAGAGGGC
GTGAAAGAAGAGGACCTGATGCTGGACAAGCTGTACATCAAGACGTACCT
AGACTTTGTGGAGCATATTGATGGGATTGACAACGGCATCAACATCGCGG
AGGGCAATCTCCGGTATACGGTCCAGACGCACTTGCCCGGTCGCGTCGCC
ACTCTGAACCCGGCCTGGAATGAAGACGATTCCGCTAACGCATTGAACGA
GAGGTTTGCCGACGCCTTGGCTATGGTCAGTACGGAGTTTATCAATTTTG
TTGGATATCTATGTAAGTCTTGGTGGCCGGCTCGGCAGCGTGTGGCCGAG
GGGTTTCAGGGTCGTTTCACGGTTCATCCGAGTGGCAAGATTCTGCATTT
GATGACGTACTGTCCTTGGCAAGACCATTTATTTGACCTAGAACTAGACG
CAGGCGTGCCGGGACAGGTTCTGTACGTTTTGTATGCCGACTCCAAGGGC
AGCTCGGTGAGAATACATGCTGTTCCTGACAGGGTGGGGTCGTTTGCTCT
GCGGTTGGCAATGCCCGAGGCTTGGCGAGGTTTAAGAAACGAGGTCTTGG
GAGCAGCTGTGGGTGGGATTCCGGGTTGTATTTTCGTTCATGCCAATGGC
TTCATTGGAGGAAATGCGACATTGGAGGGGGCGATGGAGATGGCCAAGTT
GGCGTTGACTTATGTGGTTTAG
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Synonyms
Publications