NO08G02780.1, NO08G02780.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G02780.1
Unique NameNO08G02780.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1158
Alignment locationchr8:782362..784072 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:782362..784072 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G02780.1 vs.
Match: EWM26624.1 (amidohydrolase 2 [Nannochloropsis gaditana])

HSP 1 Score: 539.7 bits (1389), Expect = 7.600e-150
Identity = 262/363 (72.18%), Postives = 302/363 (83.20%), Query Frame = 0 
Query:   23 LIPNMPTTLPPLPIVDPHFHIWDANTLPNPNLGELTMKALPVYSFLNYEQDCGVGVAGSVHIEAVVGQAKGAAKALDPVAETRFVLEKVGAEGVKNVNIVAFVKLSAMPEAQAVIDAHKHLAAERFVGVRMILNYSSDDPSLTWPQVERGDFLTGGVPSFKEGFALLAPRGLSFDLQVNWFQLQDAATFLQAFPETVVIVDHMGCLKLGAGDEEDAKRIAVWQEGMKALAALPNVYVKLSMLEYMRSGWQHKETGIATAEVMSSEISAAGNDVEKEISEGSSSTTNANTVVKARVREVIEWFGSERCMFASNFPVDKCLLGGDAQPTTLEALVLAQHALVSDLPEEQTLQLFSETAKKVYKLK 386
            L   MPTT PPLP++DPHFHIWD  T PN NLGELT+K LPVYSF NYE+DCGVGV+GSVH+EA+VGQA+GA   LDPVAETRFVLE++GAEGV+NVN+V FVKLS MP A+AVI+AH+H+A  R VGVRMILN+S++DPSLTWPQVERGD+LTGG PSF EGFALL PR LSFDLQVNWFQLQDAATFLQAFP+TVVI+DHMGCLKLGAG+EEDA+RI VWQ GM+ALAALPNV+VKLSMLEY+RSGWQ  +TG    +  S +                ++ TNA+ VVKARVR+ I+WFG  RCMFASNFPVDKCLLG D +PT+LE LVLAQHALV+DLPEE+  QLF ETA+KVYKLK
Sbjct:   42 LFCRMPTTTPPLPVLDPHFHIWDNKTHPNSNLGELTLKELPVYSFRNYEEDCGVGVSGSVHVEAIVGQAEGAVDGLDPVAETRFVLEQLGAEGVRNVNLVVFVKLSDMPRAEAVIEAHRHVAGTRLVGVRMILNHSAEDPSLTWPQVERGDYLTGGSPSFNEGFALLGPRKLSFDLQVNWFQLQDAATFLQAFPDTVVILDHMGCLKLGAGEEEDARRITVWQRGMQALAALPNVFVKLSMLEYIRSGWQSDDTGKGEGDSKSDDTQG---------DAAGAACTNAHAVVKARVRDTIKWFGPSRCMFASNFPVDKCLLGRDCRPTSLENLVLAQHALVADLPEEEQRQLFIETARKVYKLK 395
The following BLAST results are available for this feature:
BLAST of NO08G02780.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26624.17.600e-15072.18amidohydrolase 2 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G02780NO08G02780Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G02780.1NO08G02780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G02780.1.cds1NO08G02780.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G02780.1.cds2NO08G02780.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G02780.1 ID=NO08G02780.1|Name=NO08G02780.1|organism=Nannochloropsis oceanica|type=mRNA|length=1158bp
ATGAATCCGGACAAGGCCGGGTCAGGTAATCTGGCGCCCACCCACAGCCA
CCACATCAACGACGTCCTCATCCCCAATATGCCAACAACACTACCACCGC
TCCCCATTGTGGATCCTCACTTCCACATTTGGGACGCCAACACGCTTCCC
AACCCCAACCTCGGTGAGCTGACCATGAAAGCGCTGCCCGTTTACAGCTT
CCTGAATTACGAGCAGGACTGTGGCGTGGGGGTGGCGGGCTCCGTTCACA
TCGAAGCCGTCGTTGGTCAGGCCAAGGGTGCTGCAAAAGCGTTAGACCCC
GTCGCAGAGACGCGTTTCGTCCTTGAAAAAGTTGGAGCCGAAGGAGTGAA
GAACGTCAACATTGTAGCGTTTGTAAAGCTCAGTGCCATGCCCGAAGCAC
AGGCCGTCATCGACGCGCACAAACACCTGGCGGCTGAGCGATTCGTTGGC
GTGCGGATGATTTTGAATTATTCTTCCGATGACCCGTCTTTGACCTGGCC
TCAAGTGGAGCGCGGCGATTTCCTCACAGGCGGCGTACCATCGTTCAAGG
AGGGCTTTGCACTGCTTGCCCCGCGGGGGTTATCCTTCGATTTGCAAGTC
AATTGGTTTCAGCTTCAAGACGCTGCAACATTTTTGCAGGCCTTTCCCGA
AACGGTGGTTATTGTTGATCATATGGGTTGCTTGAAATTGGGGGCTGGAG
ATGAAGAGGACGCCAAGCGCATTGCTGTGTGGCAAGAGGGTATGAAGGCG
TTAGCTGCTTTGCCGAATGTGTACGTGAAGTTGTCGATGTTGGAATACAT
GCGTTCAGGGTGGCAGCACAAAGAGACGGGAATAGCGACGGCAGAGGTAA
TGTCAAGCGAGATCAGTGCCGCTGGGAACGATGTGGAGAAGGAAATAAGC
GAGGGCAGCAGCAGCACCACCAATGCTAATACTGTTGTGAAGGCGCGTGT
CCGAGAAGTTATTGAGTGGTTTGGGTCCGAGCGGTGTATGTTCGCGAGTA
ACTTCCCAGTGGATAAGTGTCTGTTGGGTGGTGACGCTCAGCCGACCACG
CTTGAGGCGTTGGTGCTGGCGCAGCATGCGTTGGTAAGTGACTTGCCGGA
GGAGCAGACACTGCAACTGTTTTCAGAGACGGCCAAGAAGGTATATAAGC
TCAAATAG
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protein sequence of NO08G02780.1

>NO08G02780.1-protein ID=NO08G02780.1-protein|Name=NO08G02780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=386bp
MNPDKAGSGNLAPTHSHHINDVLIPNMPTTLPPLPIVDPHFHIWDANTLP
NPNLGELTMKALPVYSFLNYEQDCGVGVAGSVHIEAVVGQAKGAAKALDP
VAETRFVLEKVGAEGVKNVNIVAFVKLSAMPEAQAVIDAHKHLAAERFVG
VRMILNYSSDDPSLTWPQVERGDFLTGGVPSFKEGFALLAPRGLSFDLQV
NWFQLQDAATFLQAFPETVVIVDHMGCLKLGAGDEEDAKRIAVWQEGMKA
LAALPNVYVKLSMLEYMRSGWQHKETGIATAEVMSSEISAAGNDVEKEIS
EGSSSTTNANTVVKARVREVIEWFGSERCMFASNFPVDKCLLGGDAQPTT
LEALVLAQHALVSDLPEEQTLQLFSETAKKVYKLK*
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mRNA from alignment at chr8:782362..784072+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G02780.1 ID=NO08G02780.1|Name=NO08G02780.1|organism=Nannochloropsis oceanica|type=mRNA|length=1711bp|location=Sequence derived from alignment at chr8:782362..784072+ (Nannochloropsis oceanica)
ATGAATCCGGACAAGGCCGGGTCAGGTAATCTGGCGCCCACCCACAGGTA
AGGCATCTGCCCTCCTCTCCCTACATAGATCCCACCCACCACCGCCGCAC
ACAAACAACACAACACCTGCAATCCAAACACCATCATCTCCCGTAAATTG
CTGCAGGAAAGGAATATCCAATTTTTATCAGAATTAAATCAGCAGGATTC
ATGAAGTCATGAGTGAAAGTTTAATGAAAATGTGATTGCGAATGTAATTT
CCGAACAACAACTCAACCTCCTGCCCTCCACTGTGGCAGAATCTGCGGTA
ACTTAAACCACAAATAATTTAAAGCTTTAAATTTTGTGACACTCGTTTAC
TGTCTACCACGCTTAGGTCTGCGCACCTATGGCTTATGAAGCATAAAGGG
GATCGGGTTCGGGGTCGGTTGAAGTTTGCCACGTAGTGTTCGGTGCAGCA
TTATTTTCTTCCAGAGGCACAACTGGCGACGCACACACGTACACATCACT
CTAGAACAATCGGGGTGCGACAGCATACCTAACCACAATGCCCTTGAGGA
ATCTTTTATGGAGCAACTCAAACCAGACTAAACGCATACTCCCCACATAG
CCACCACATCAACGACGTCCTCATCCCCAATATGCCAACAACACTACCAC
CGCTCCCCATTGTGGATCCTCACTTCCACATTTGGGACGCCAACACGCTT
CCCAACCCCAACCTCGGTGAGCTGACCATGAAAGCGCTGCCCGTTTACAG
CTTCCTGAATTACGAGCAGGACTGTGGCGTGGGGGTGGCGGGCTCCGTTC
ACATCGAAGCCGTCGTTGGTCAGGCCAAGGGTGCTGCAAAAGCGTTAGAC
CCCGTCGCAGAGACGCGTTTCGTCCTTGAAAAAGTTGGAGCCGAAGGAGT
GAAGAACGTCAACATTGTAGCGTTTGTAAAGCTCAGTGCCATGCCCGAAG
CACAGGCCGTCATCGACGCGCACAAACACCTGGCGGCTGAGCGATTCGTT
GGCGTGCGGATGATTTTGAATTATTCTTCCGATGACCCGTCTTTGACCTG
GCCTCAAGTGGAGCGCGGCGATTTCCTCACAGGCGGCGTACCATCGTTCA
AGGAGGGCTTTGCACTGCTTGCCCCGCGGGGGTTATCCTTCGATTTGCAA
GTCAATTGGTTTCAGCTTCAAGACGCTGCAACATTTTTGCAGGCCTTTCC
CGAAACGGTGGTTATTGTTGATCATATGGGTTGCTTGAAATTGGGGGCTG
GAGATGAAGAGGACGCCAAGCGCATTGCTGTGTGGCAAGAGGGTATGAAG
GCGTTAGCTGCTTTGCCGAATGTGTACGTGAAGTTGTCGATGTTGGAATA
CATGCGTTCAGGGTGGCAGCACAAAGAGACGGGAATAGCGACGGCAGAGG
TAATGTCAAGCGAGATCAGTGCCGCTGGGAACGATGTGGAGAAGGAAATA
AGCGAGGGCAGCAGCAGCACCACCAATGCTAATACTGTTGTGAAGGCGCG
TGTCCGAGAAGTTATTGAGTGGTTTGGGTCCGAGCGGTGTATGTTCGCGA
GTAACTTCCCAGTGGATAAGTGTCTGTTGGGTGGTGACGCTCAGCCGACC
ACGCTTGAGGCGTTGGTGCTGGCGCAGCATGCGTTGGTAAGTGACTTGCC
GGAGGAGCAGACACTGCAACTGTTTTCAGAGACGGCCAAGAAGGTATATA
AGCTCAAATAG
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Coding sequence (CDS) from alignment at chr8:782362..784072+

>NO08G02780.1 ID=NO08G02780.1|Name=NO08G02780.1|organism=Nannochloropsis oceanica|type=CDS|length=1158bp|location=Sequence derived from alignment at chr8:782362..784072+ (Nannochloropsis oceanica)
ATGAATCCGGACAAGGCCGGGTCAGGTAATCTGGCGCCCACCCACAGCCA
CCACATCAACGACGTCCTCATCCCCAATATGCCAACAACACTACCACCGC
TCCCCATTGTGGATCCTCACTTCCACATTTGGGACGCCAACACGCTTCCC
AACCCCAACCTCGGTGAGCTGACCATGAAAGCGCTGCCCGTTTACAGCTT
CCTGAATTACGAGCAGGACTGTGGCGTGGGGGTGGCGGGCTCCGTTCACA
TCGAAGCCGTCGTTGGTCAGGCCAAGGGTGCTGCAAAAGCGTTAGACCCC
GTCGCAGAGACGCGTTTCGTCCTTGAAAAAGTTGGAGCCGAAGGAGTGAA
GAACGTCAACATTGTAGCGTTTGTAAAGCTCAGTGCCATGCCCGAAGCAC
AGGCCGTCATCGACGCGCACAAACACCTGGCGGCTGAGCGATTCGTTGGC
GTGCGGATGATTTTGAATTATTCTTCCGATGACCCGTCTTTGACCTGGCC
TCAAGTGGAGCGCGGCGATTTCCTCACAGGCGGCGTACCATCGTTCAAGG
AGGGCTTTGCACTGCTTGCCCCGCGGGGGTTATCCTTCGATTTGCAAGTC
AATTGGTTTCAGCTTCAAGACGCTGCAACATTTTTGCAGGCCTTTCCCGA
AACGGTGGTTATTGTTGATCATATGGGTTGCTTGAAATTGGGGGCTGGAG
ATGAAGAGGACGCCAAGCGCATTGCTGTGTGGCAAGAGGGTATGAAGGCG
TTAGCTGCTTTGCCGAATGTGTACGTGAAGTTGTCGATGTTGGAATACAT
GCGTTCAGGGTGGCAGCACAAAGAGACGGGAATAGCGACGGCAGAGGTAA
TGTCAAGCGAGATCAGTGCCGCTGGGAACGATGTGGAGAAGGAAATAAGC
GAGGGCAGCAGCAGCACCACCAATGCTAATACTGTTGTGAAGGCGCGTGT
CCGAGAAGTTATTGAGTGGTTTGGGTCCGAGCGGTGTATGTTCGCGAGTA
ACTTCCCAGTGGATAAGTGTCTGTTGGGTGGTGACGCTCAGCCGACCACG
CTTGAGGCGTTGGTGCTGGCGCAGCATGCGTTGGTAAGTGACTTGCCGGA
GGAGCAGACACTGCAACTGTTTTCAGAGACGGCCAAGAAGGTATATAAGC
TCAAATAG
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Synonyms
Publications