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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr8 | genome | chr8:735383..737158 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G02620.1 vs.
Match: EWM26639.1 (Putative S-adenosyl-L-methionine-dependent methyltransferase MidA [Nannochloropsis gaditana]) HSP 1 Score: 704.1 bits (1816), Expect = 3.400e-199 Identity = 365/533 (68.48%), Postives = 417/533 (78.24%), Query Frame = 0
Query: 34 HGCSGSGDREFAAQKTDPATNAAEEQYISVDKRGLYQEVARAMGGKVEKSPMTPLGKLLQASIKQVGPISVADFMDVCLSHPEHGYYMNKETAKIGKAGDFITAPEISQMFGELLGVWGVATWEKLGTPRAFRLTEIGPGRGTLMQDILRVARTFAPFHKSLAGVHMVETSRALRKVQAEALGAVQ-DKDHEKELKEGEQSDHIATQKSDGGKDVEWERGGRQLARKPRWRLPCEQGIDWHEDVRQVPVGSPLIIFAQELLDALPVHQFEYTAEGWRERLVDVQEDPLAPHHFKFTLAKDPTPPVIHLENLMPGKLQALLDAAAAAAPAPARGGVDEDEGEKKKEG-ETEEVDDDPELRKLGTSLEVCPLALQIVQQVAERVARTGGAALFVDYGEDHAQGDSLRGLKRHALVHALAEPGEIDLSTDVDFAAVKEAVAGVDGVRTFGPMPQGEFLSAMGIETRLQALL--DGKEGGGLTDKQALLLYDSYRRLVDPEQMGRKYKVLALVSSKHQGPAIAFPSTSMAKEDKEES 563
+G GSG R +T+ + E YISVDKRGLY+EV RAM GK EKSP+TPLGKLLQ SIKQVGPIS+ADFMDVCL+HPEHGYYM ++T KIGK GDF+TAPEISQMFGELLGVW VATWEKLGTPR FRL EIGPG+GTLM+DILRVA+ F PFH +L GV M+ETS+ALR+VQAEALGAV DK+ E + + D G + EWERGGR+ RK RW LPC++ IDWH+DVRQ+PV SP IIFAQELLDALPVHQFEYT GWRERLVDV EDP PHHFKF LAK+PT PVIHLE +MP LQ LD AA + +K +G +T+E +DPE +KLGTSLEVCPLALQ+ Q VAERV+RTGGAALFVDYGED AQGD+LRGLK HALVH LAEPGE+DLS DVDF ++EAVA V+G+R FGPM QGEFLSAMGIE RLQALL +G+E GLTD+QALLLYDSYRRLVDPEQMGRKYKVLA V+ HQGPA+AFPSTS+ + E+
Sbjct: 46 YGLGGSGRRTLTN-----STDVSGEHYISVDKRGLYEEVTRAMSGKKEKSPLTPLGKLLQTSIKQVGPISIADFMDVCLAHPEHGYYMKQQTTKIGKGGDFVTAPEISQMFGELLGVWAVATWEKLGTPRVFRLAEIGPGKGTLMKDILRVAQNFPPFHNALGGVSMIETSQALRRVQAEALGAVSIDKNWTNSDTERD------SDARDIGDEAEWERGGRRHERKARWCLPCKRKIDWHDDVRQMPVESPSIIFAQELLDALPVHQFEYTENGWRERLVDVDEDPQTPHHFKFILAKEPTVPVIHLERIMPRTLQNFLDTAACSPCG----------HDKISDGTKTDEAIEDPEKKKLGTSLEVCPLALQLAQHVAERVSRTGGAALFVDYGEDMAQGDTLRGLKMHALVHPLAEPGEVDLSADVDFQGLREAVAHVEGLRVFGPMSQGEFLSAMGIEARLQALLGGEGEERSGLTDRQALLLYDSYRRLVDPEQMGRKYKVLAFVAKSHQGPAVAFPSTSLRTKGVTEN 557
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G02620.1 ID=NO08G02620.1|Name=NO08G02620.1|organism=Nannochloropsis oceanica|type=mRNA|length=1776bp
AACAGGAGCGCAGTTGGGGAGGTTTGTGTGTTCGAAGATGCACAGACTTA
TCCTTCATTCACACGTCCGACAACGCGCGCAGGTACCGGTACCCTTCCAC
CGTGCATTTGTAAGCAGTAATGGTGGAGGCAGCAGTCATGGTTGTAGCGG
CAGTGGCGACCGGGAATTTGCCGCGCAAAAGACAGACCCGGCTACAAACG
CGGCTGAGGAGCAGTACATTAGCGTGGACAAGCGGGGACTGTATCAGGAA
GTAGCGCGGGCCATGGGTGGCAAAGTGGAGAAATCCCCTATGACACCATT
AGGCAAACTCTTGCAGGCCTCGATCAAGCAGGTTGGCCCCATTTCCGTCG
CGGACTTTATGGACGTGTGTTTGTCGCACCCCGAGCACGGCTACTACATG
AATAAGGAGACAGCCAAGATTGGGAAGGCAGGCGATTTTATCACAGCCCC
TGAAATCAGCCAAATGTTTGGGGAGCTGCTGGGTGTATGGGGAGTGGCGA
CATGGGAGAAATTGGGGACACCGCGAGCGTTTCGGTTGACGGAGATTGGG
CCAGGGAGGGGGACACTCATGCAAGACATTCTGCGGGTGGCACGGACCTT
TGCCCCGTTTCACAAGAGCTTGGCAGGCGTGCACATGGTAGAGACCAGTC
GGGCGCTGAGAAAGGTGCAAGCTGAAGCTTTGGGTGCTGTTCAAGACAAG
GATCATGAGAAGGAGCTGAAGGAGGGAGAACAAAGTGATCACATTGCAAC
GCAAAAAAGTGACGGGGGGAAGGATGTGGAATGGGAACGTGGTGGCAGAC
AACTTGCACGCAAGCCCCGTTGGCGCCTACCGTGCGAGCAAGGGATTGAT
TGGCACGAGGATGTAAGGCAGGTACCGGTTGGAAGTCCCCTGATTATCTT
TGCGCAAGAACTGCTGGACGCCTTACCGGTACACCAATTCGAGTACACAG
CCGAGGGCTGGAGGGAGCGCCTGGTGGACGTGCAGGAGGACCCACTGGCA
CCTCATCACTTCAAATTTACTCTAGCGAAGGACCCGACCCCACCGGTGAT
CCATTTGGAAAACCTAATGCCCGGTAAATTGCAGGCCTTGCTCGATGCAG
CGGCGGCTGCGGCCCCGGCACCTGCACGAGGGGGCGTGGATGAGGATGAG
GGCGAGAAGAAGAAAGAGGGGGAAACAGAGGAGGTAGACGATGACCCTGA
ACTACGCAAGCTCGGTACGAGTTTGGAAGTGTGTCCGTTGGCACTGCAGA
TCGTGCAGCAGGTGGCGGAGCGGGTGGCGAGGACTGGAGGGGCAGCTTTG
TTTGTTGATTATGGGGAGGATCACGCGCAGGGAGATTCGTTGAGGGGCCT
TAAGAGACATGCCTTGGTGCACGCATTAGCGGAGCCGGGGGAGATCGACT
TGAGCACTGATGTGGATTTTGCGGCAGTTAAGGAGGCGGTGGCAGGGGTG
GACGGGGTGAGGACCTTCGGTCCTATGCCGCAAGGGGAGTTTCTGTCGGC
CATGGGGATTGAGACCAGGCTGCAGGCGCTGTTGGATGGGAAGGAGGGCG
GAGGGCTGACAGATAAGCAGGCATTGTTGCTCTATGATTCATATAGGCGG
TTGGTGGACCCAGAGCAGATGGGGAGGAAGTATAAGGTGTTGGCGTTGGT
GAGCTCGAAACATCAGGGACCGGCGATTGCGTTTCCGTCGACGAGCATGG
CGAAGGAGGACAAGGAGGAGAGTGAAAATTAAAGAAATCCGAAAATTAGT
AATAGGCATGTAACTTTTAGATGGGG back to topprotein sequence of NO08G02620.1 >NO08G02620.1-protein ID=NO08G02620.1-protein|Name=NO08G02620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=565bp
MHRLILHSHVRQRAQVPVPFHRAFVSSNGGGSSHGCSGSGDREFAAQKTD
PATNAAEEQYISVDKRGLYQEVARAMGGKVEKSPMTPLGKLLQASIKQVG
PISVADFMDVCLSHPEHGYYMNKETAKIGKAGDFITAPEISQMFGELLGV
WGVATWEKLGTPRAFRLTEIGPGRGTLMQDILRVARTFAPFHKSLAGVHM
VETSRALRKVQAEALGAVQDKDHEKELKEGEQSDHIATQKSDGGKDVEWE
RGGRQLARKPRWRLPCEQGIDWHEDVRQVPVGSPLIIFAQELLDALPVHQ
FEYTAEGWRERLVDVQEDPLAPHHFKFTLAKDPTPPVIHLENLMPGKLQA
LLDAAAAAAPAPARGGVDEDEGEKKKEGETEEVDDDPELRKLGTSLEVCP
LALQIVQQVAERVARTGGAALFVDYGEDHAQGDSLRGLKRHALVHALAEP
GEIDLSTDVDFAAVKEAVAGVDGVRTFGPMPQGEFLSAMGIETRLQALLD
GKEGGGLTDKQALLLYDSYRRLVDPEQMGRKYKVLALVSSKHQGPAIAFP
STSMAKEDKEESEN* back to topmRNA from alignment at chr8:735383..737158- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G02620.1 ID=NO08G02620.1|Name=NO08G02620.1|organism=Nannochloropsis oceanica|type=mRNA|length=1776bp|location=Sequence derived from alignment at chr8:735383..737158- (Nannochloropsis oceanica)
AACAGGAGCGCAGTTGGGGAGGTTTGTGTGTTCGAAGATGCACAGACTTA
TCCTTCATTCACACGTCCGACAACGCGCGCAGGTACCGGTACCCTTCCAC
CGTGCATTTGTAAGCAGTAATGGTGGAGGCAGCAGTCATGGTTGTAGCGG
CAGTGGCGACCGGGAATTTGCCGCGCAAAAGACAGACCCGGCTACAAACG
CGGCTGAGGAGCAGTACATTAGCGTGGACAAGCGGGGACTGTATCAGGAA
GTAGCGCGGGCCATGGGTGGCAAAGTGGAGAAATCCCCTATGACACCATT
AGGCAAACTCTTGCAGGCCTCGATCAAGCAGGTTGGCCCCATTTCCGTCG
CGGACTTTATGGACGTGTGTTTGTCGCACCCCGAGCACGGCTACTACATG
AATAAGGAGACAGCCAAGATTGGGAAGGCAGGCGATTTTATCACAGCCCC
TGAAATCAGCCAAATGTTTGGGGAGCTGCTGGGTGTATGGGGAGTGGCGA
CATGGGAGAAATTGGGGACACCGCGAGCGTTTCGGTTGACGGAGATTGGG
CCAGGGAGGGGGACACTCATGCAAGACATTCTGCGGGTGGCACGGACCTT
TGCCCCGTTTCACAAGAGCTTGGCAGGCGTGCACATGGTAGAGACCAGTC
GGGCGCTGAGAAAGGTGCAAGCTGAAGCTTTGGGTGCTGTTCAAGACAAG
GATCATGAGAAGGAGCTGAAGGAGGGAGAACAAAGTGATCACATTGCAAC
GCAAAAAAGTGACGGGGGGAAGGATGTGGAATGGGAACGTGGTGGCAGAC
AACTTGCACGCAAGCCCCGTTGGCGCCTACCGTGCGAGCAAGGGATTGAT
TGGCACGAGGATGTAAGGCAGGTACCGGTTGGAAGTCCCCTGATTATCTT
TGCGCAAGAACTGCTGGACGCCTTACCGGTACACCAATTCGAGTACACAG
CCGAGGGCTGGAGGGAGCGCCTGGTGGACGTGCAGGAGGACCCACTGGCA
CCTCATCACTTCAAATTTACTCTAGCGAAGGACCCGACCCCACCGGTGAT
CCATTTGGAAAACCTAATGCCCGGTAAATTGCAGGCCTTGCTCGATGCAG
CGGCGGCTGCGGCCCCGGCACCTGCACGAGGGGGCGTGGATGAGGATGAG
GGCGAGAAGAAGAAAGAGGGGGAAACAGAGGAGGTAGACGATGACCCTGA
ACTACGCAAGCTCGGTACGAGTTTGGAAGTGTGTCCGTTGGCACTGCAGA
TCGTGCAGCAGGTGGCGGAGCGGGTGGCGAGGACTGGAGGGGCAGCTTTG
TTTGTTGATTATGGGGAGGATCACGCGCAGGGAGATTCGTTGAGGGGCCT
TAAGAGACATGCCTTGGTGCACGCATTAGCGGAGCCGGGGGAGATCGACT
TGAGCACTGATGTGGATTTTGCGGCAGTTAAGGAGGCGGTGGCAGGGGTG
GACGGGGTGAGGACCTTCGGTCCTATGCCGCAAGGGGAGTTTCTGTCGGC
CATGGGGATTGAGACCAGGCTGCAGGCGCTGTTGGATGGGAAGGAGGGCG
GAGGGCTGACAGATAAGCAGGCATTGTTGCTCTATGATTCATATAGGCGG
TTGGTGGACCCAGAGCAGATGGGGAGGAAGTATAAGGTGTTGGCGTTGGT
GAGCTCGAAACATCAGGGACCGGCGATTGCGTTTCCGTCGACGAGCATGG
CGAAGGAGGACAAGGAGGAGAGTGAAAATTAAAGAAATCCGAAAATTAGT
AATAGGCATGTAACTTTTAGATGGGG back to topCoding sequence (CDS) from alignment at chr8:735383..737158- >NO08G02620.1 ID=NO08G02620.1|Name=NO08G02620.1|organism=Nannochloropsis oceanica|type=CDS|length=1695bp|location=Sequence derived from alignment at chr8:735383..737158- (Nannochloropsis oceanica)
ATGCACAGACTTATCCTTCATTCACACGTCCGACAACGCGCGCAGGTACC
GGTACCCTTCCACCGTGCATTTGTAAGCAGTAATGGTGGAGGCAGCAGTC
ATGGTTGTAGCGGCAGTGGCGACCGGGAATTTGCCGCGCAAAAGACAGAC
CCGGCTACAAACGCGGCTGAGGAGCAGTACATTAGCGTGGACAAGCGGGG
ACTGTATCAGGAAGTAGCGCGGGCCATGGGTGGCAAAGTGGAGAAATCCC
CTATGACACCATTAGGCAAACTCTTGCAGGCCTCGATCAAGCAGGTTGGC
CCCATTTCCGTCGCGGACTTTATGGACGTGTGTTTGTCGCACCCCGAGCA
CGGCTACTACATGAATAAGGAGACAGCCAAGATTGGGAAGGCAGGCGATT
TTATCACAGCCCCTGAAATCAGCCAAATGTTTGGGGAGCTGCTGGGTGTA
TGGGGAGTGGCGACATGGGAGAAATTGGGGACACCGCGAGCGTTTCGGTT
GACGGAGATTGGGCCAGGGAGGGGGACACTCATGCAAGACATTCTGCGGG
TGGCACGGACCTTTGCCCCGTTTCACAAGAGCTTGGCAGGCGTGCACATG
GTAGAGACCAGTCGGGCGCTGAGAAAGGTGCAAGCTGAAGCTTTGGGTGC
TGTTCAAGACAAGGATCATGAGAAGGAGCTGAAGGAGGGAGAACAAAGTG
ATCACATTGCAACGCAAAAAAGTGACGGGGGGAAGGATGTGGAATGGGAA
CGTGGTGGCAGACAACTTGCACGCAAGCCCCGTTGGCGCCTACCGTGCGA
GCAAGGGATTGATTGGCACGAGGATGTAAGGCAGGTACCGGTTGGAAGTC
CCCTGATTATCTTTGCGCAAGAACTGCTGGACGCCTTACCGGTACACCAA
TTCGAGTACACAGCCGAGGGCTGGAGGGAGCGCCTGGTGGACGTGCAGGA
GGACCCACTGGCACCTCATCACTTCAAATTTACTCTAGCGAAGGACCCGA
CCCCACCGGTGATCCATTTGGAAAACCTAATGCCCGGTAAATTGCAGGCC
TTGCTCGATGCAGCGGCGGCTGCGGCCCCGGCACCTGCACGAGGGGGCGT
GGATGAGGATGAGGGCGAGAAGAAGAAAGAGGGGGAAACAGAGGAGGTAG
ACGATGACCCTGAACTACGCAAGCTCGGTACGAGTTTGGAAGTGTGTCCG
TTGGCACTGCAGATCGTGCAGCAGGTGGCGGAGCGGGTGGCGAGGACTGG
AGGGGCAGCTTTGTTTGTTGATTATGGGGAGGATCACGCGCAGGGAGATT
CGTTGAGGGGCCTTAAGAGACATGCCTTGGTGCACGCATTAGCGGAGCCG
GGGGAGATCGACTTGAGCACTGATGTGGATTTTGCGGCAGTTAAGGAGGC
GGTGGCAGGGGTGGACGGGGTGAGGACCTTCGGTCCTATGCCGCAAGGGG
AGTTTCTGTCGGCCATGGGGATTGAGACCAGGCTGCAGGCGCTGTTGGAT
GGGAAGGAGGGCGGAGGGCTGACAGATAAGCAGGCATTGTTGCTCTATGA
TTCATATAGGCGGTTGGTGGACCCAGAGCAGATGGGGAGGAAGTATAAGG
TGTTGGCGTTGGTGAGCTCGAAACATCAGGGACCGGCGATTGCGTTTCCG
TCGACGAGCATGGCGAAGGAGGACAAGGAGGAGAGTGAAAATTAA back to top
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