NO08G02610.1, NO08G02610.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G02610.1
Unique NameNO08G02610.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length621
Alignment locationchr8:734688..735308 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:734688..735308 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G02610.1 vs.
Match: EWM26691.1 (hypothetical protein Naga_100001g166 [Nannochloropsis gaditana])

HSP 1 Score: 197.2 bits (500), Expect = 5.000e-47
Identity = 101/154 (65.58%), Postives = 119/154 (77.27%), Query Frame = 0 
Query:   52 RKRQTWKLAGHFSPQQTEEDDTQGERKRRITKPFFAILSTIIVLLSLVSVAYNLYLIIQKDGTTTSILPRIYRGFAIVLAFAAILTEASVKWWKKLCPVLSYLFVRGFFYCLIAILSLEDFNARDDNVVGFVFLGFGLFYVALALMCVQRHVEI 206
            RK+    L+ H   ++   +     R+RRITKPFFA+LST  VLLSLVSVAYNLYLI  KD  T SILPRI+RGFAIVLAF AIL E+ +KWW+KLCP+LS  FVRGFFYCLIA LS+EDF+   DNV+GFVFL  GLFYVAL ++CV+RHVEI
Sbjct:   95 RKKSPSLLSSHHQTRRNGRET----RRRRITKPFFAVLSTFTVLLSLVSVAYNLYLIATKDKDTNSILPRIHRGFAIVLAFPAILNESGIKWWRKLCPILSNFFVRGFFYCLIACLSIEDFSPSSDNVMGFVFLSLGLFYVALGMLCVRRHVEI 244
The following BLAST results are available for this feature:
BLAST of NO08G02610.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26691.15.000e-4765.58hypothetical protein Naga_100001g166 [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G02610NO08G02610Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G02610.1NO08G02610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G02610.1.cds1NO08G02610.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G02610.1 ID=NO08G02610.1|Name=NO08G02610.1|organism=Nannochloropsis oceanica|type=mRNA|length=621bp
ATGTCCTCAAATAATGCCAGCCCACGTTGGCTGGAAGAAGAGGCTACAGA
TGCCTTGATGGAACCAGAGGAAGGGCTAGAAGGAGGAGGAGACGAGGAAG
AGCTACCTGCAGGAGGAAGGGTCACACGCTCTTCTACAAAAGCGGATTCG
GGACGAAAGAGGCAGACATGGAAGTTAGCAGGACATTTTAGTCCGCAGCA
AACTGAGGAAGACGACACACAGGGAGAGCGGAAACGGCGCATCACTAAGC
CCTTTTTCGCCATTCTTAGCACGATTATCGTATTGCTGAGCCTCGTGAGC
GTCGCCTATAACCTCTACTTGATTATCCAAAAAGACGGTACCACTACCTC
AATCCTTCCCCGCATCTATCGGGGGTTTGCCATTGTGCTCGCCTTTGCAG
CTATTTTAACAGAGGCTAGCGTGAAGTGGTGGAAGAAGCTCTGCCCAGTC
CTTTCTTACCTCTTCGTGCGTGGGTTTTTTTATTGCCTAATTGCTATTTT
GAGTCTGGAAGACTTCAACGCCAGAGATGACAATGTGGTAGGATTTGTTT
TTTTGGGGTTTGGTCTCTTCTATGTCGCATTGGCCCTTATGTGTGTGCAA
CGGCATGTGGAAATTATGTAG
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protein sequence of NO08G02610.1

>NO08G02610.1-protein ID=NO08G02610.1-protein|Name=NO08G02610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=207bp
MSSNNASPRWLEEEATDALMEPEEGLEGGGDEEELPAGGRVTRSSTKADS
GRKRQTWKLAGHFSPQQTEEDDTQGERKRRITKPFFAILSTIIVLLSLVS
VAYNLYLIIQKDGTTTSILPRIYRGFAIVLAFAAILTEASVKWWKKLCPV
LSYLFVRGFFYCLIAILSLEDFNARDDNVVGFVFLGFGLFYVALALMCVQ
RHVEIM*
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mRNA from alignment at chr8:734688..735308+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G02610.1 ID=NO08G02610.1|Name=NO08G02610.1|organism=Nannochloropsis oceanica|type=mRNA|length=621bp|location=Sequence derived from alignment at chr8:734688..735308+ (Nannochloropsis oceanica)
ATGTCCTCAAATAATGCCAGCCCACGTTGGCTGGAAGAAGAGGCTACAGA
TGCCTTGATGGAACCAGAGGAAGGGCTAGAAGGAGGAGGAGACGAGGAAG
AGCTACCTGCAGGAGGAAGGGTCACACGCTCTTCTACAAAAGCGGATTCG
GGACGAAAGAGGCAGACATGGAAGTTAGCAGGACATTTTAGTCCGCAGCA
AACTGAGGAAGACGACACACAGGGAGAGCGGAAACGGCGCATCACTAAGC
CCTTTTTCGCCATTCTTAGCACGATTATCGTATTGCTGAGCCTCGTGAGC
GTCGCCTATAACCTCTACTTGATTATCCAAAAAGACGGTACCACTACCTC
AATCCTTCCCCGCATCTATCGGGGGTTTGCCATTGTGCTCGCCTTTGCAG
CTATTTTAACAGAGGCTAGCGTGAAGTGGTGGAAGAAGCTCTGCCCAGTC
CTTTCTTACCTCTTCGTGCGTGGGTTTTTTTATTGCCTAATTGCTATTTT
GAGTCTGGAAGACTTCAACGCCAGAGATGACAATGTGGTAGGATTTGTTT
TTTTGGGGTTTGGTCTCTTCTATGTCGCATTGGCCCTTATGTGTGTGCAA
CGGCATGTGGAAATTATGTAG
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Coding sequence (CDS) from alignment at chr8:734688..735308+

>NO08G02610.1 ID=NO08G02610.1|Name=NO08G02610.1|organism=Nannochloropsis oceanica|type=CDS|length=621bp|location=Sequence derived from alignment at chr8:734688..735308+ (Nannochloropsis oceanica)
ATGTCCTCAAATAATGCCAGCCCACGTTGGCTGGAAGAAGAGGCTACAGA
TGCCTTGATGGAACCAGAGGAAGGGCTAGAAGGAGGAGGAGACGAGGAAG
AGCTACCTGCAGGAGGAAGGGTCACACGCTCTTCTACAAAAGCGGATTCG
GGACGAAAGAGGCAGACATGGAAGTTAGCAGGACATTTTAGTCCGCAGCA
AACTGAGGAAGACGACACACAGGGAGAGCGGAAACGGCGCATCACTAAGC
CCTTTTTCGCCATTCTTAGCACGATTATCGTATTGCTGAGCCTCGTGAGC
GTCGCCTATAACCTCTACTTGATTATCCAAAAAGACGGTACCACTACCTC
AATCCTTCCCCGCATCTATCGGGGGTTTGCCATTGTGCTCGCCTTTGCAG
CTATTTTAACAGAGGCTAGCGTGAAGTGGTGGAAGAAGCTCTGCCCAGTC
CTTTCTTACCTCTTCGTGCGTGGGTTTTTTTATTGCCTAATTGCTATTTT
GAGTCTGGAAGACTTCAACGCCAGAGATGACAATGTGGTAGGATTTGTTT
TTTTGGGGTTTGGTCTCTTCTATGTCGCATTGGCCCTTATGTGTGTGCAA
CGGCATGTGGAAATTATGTAG
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Synonyms
Publications