NO08G02580.1, NO08G02580.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G02580.1
Unique NameNO08G02580.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length903
Alignment locationchr8:728343..729245 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:728343..729245 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G02580.1 vs.
Match: EWM26632.1 (CheY-like superfamily [Nannochloropsis gaditana])

HSP 1 Score: 171.0 bits (432), Expect = 5.600e-39
Identity = 107/249 (42.97%), Postives = 147/249 (59.04%), Query Frame = 0 
Query:   53 PRLVRVLFVDTYVARASEIRRALEHESRGGLFPELVAAFDVVREGLEALALAQVVPYDAVFLSAGLRDITADELVGDIMKIGLRVPLVLMAAPHTVDTQKAAACGFNAILLRPVTGAGLVGVIRALCLSPPPSTSQQSEMLGPASQAVARASHASPSSSSLQAA-TNITRPVLPPPQNLPDWEDVIVGAATIYED-GDIQASSISSWRPPQILRMPISETLSHLRLQAHEPKRVAPAPRGWCVKKKFKT 300
            PRL+RV+ VDTY+A+AS+IR+ LEHE    L P  VAAFDVV++G+EALALA  VPYDA+FLS  L  ITA+ELV D+ +IG    +V++     V +   +A GF A LLRPVTG+ +   +RAL  SP   +S          +     + +SP +S  ++A  +    ++PP ++LPDW       + I E    +   + S WRPPQIL M ISETL HL LQ    K+V    RG+C+   + T
Sbjct:   30 PRLLRVMVVDTYIAQASDIRQFLEHEVGRDLVPGFVAAFDVVQDGVEALALAHGVPYDAIFLSESLHGITAEELVSDLFRIGSDAFMVMIVGAQCVRSDSISAAGFTATLLRPVTGSKIADALRAL-YSPQGLSSHSPRSTESFMRKNPPVNMSSPFTSLTRSARADRVETLIPPARDLPDWTHFTPRISDIDESYHSLSGDATSFWRPPQILSMAISETLGHLLLQG--GKKVKSENRGYCIGSAWLT 275
The following BLAST results are available for this feature:
BLAST of NO08G02580.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26632.15.600e-3942.97CheY-like superfamily [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G02580NO08G02580Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G02580.1NO08G02580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G02580.1.cds1NO08G02580.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G02580.1 ID=NO08G02580.1|Name=NO08G02580.1|organism=Nannochloropsis oceanica|type=mRNA|length=903bp
ATGGCGCAGGACAAGAGCCGCGTTCCCGACAAGCCGCCGTTGTCGCAAAT
ACCAAAGTGTCCGCTGGTAGCACCATCATCATCCTTCCCAGAAAGAATGC
GAGTGCCGTCAGAGCTAGAGACAGCAGTGGCGCCCCAACCATTCCTTCTC
CAGCCCCCACGTCTCGTGCGCGTTCTCTTCGTCGATACGTATGTAGCGCG
TGCAAGCGAGATCCGGCGGGCGCTGGAGCACGAGTCGCGCGGCGGCTTGT
TCCCGGAACTGGTGGCGGCATTCGACGTGGTACGAGAGGGCTTGGAAGCC
TTGGCCCTCGCTCAGGTCGTGCCTTACGATGCGGTATTCCTCTCGGCGGG
ATTGCGTGACATAACGGCAGATGAGCTGGTGGGAGACATTATGAAAATTG
GTTTGCGTGTGCCCTTGGTCCTGATGGCCGCGCCACACACCGTCGACACC
CAAAAGGCAGCTGCCTGTGGCTTCAACGCCATATTGTTGCGGCCTGTGAC
GGGAGCAGGCTTGGTCGGTGTGATCCGGGCCTTGTGTCTGTCACCACCAC
CATCGACAAGCCAACAGTCAGAAATGTTAGGACCTGCATCCCAAGCAGTA
GCGCGTGCCTCGCACGCCTCCCCTTCCTCCTCCTCCCTACAGGCTGCAAC
TAATATAACGCGCCCCGTCCTTCCTCCCCCACAAAACCTGCCTGATTGGG
AGGATGTAATTGTAGGGGCTGCTACTATCTACGAGGATGGCGATATTCAA
GCCTCTTCGATATCGTCTTGGCGGCCACCTCAAATTCTGCGCATGCCTAT
TAGCGAGACCTTGAGTCATCTTCGCCTCCAAGCGCATGAGCCCAAGAGAG
TAGCACCTGCACCTCGAGGATGGTGTGTAAAGAAGAAATTCAAGACAGTG
TAG
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protein sequence of NO08G02580.1

>NO08G02580.1-protein ID=NO08G02580.1-protein|Name=NO08G02580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=301bp
MAQDKSRVPDKPPLSQIPKCPLVAPSSSFPERMRVPSELETAVAPQPFLL
QPPRLVRVLFVDTYVARASEIRRALEHESRGGLFPELVAAFDVVREGLEA
LALAQVVPYDAVFLSAGLRDITADELVGDIMKIGLRVPLVLMAAPHTVDT
QKAAACGFNAILLRPVTGAGLVGVIRALCLSPPPSTSQQSEMLGPASQAV
ARASHASPSSSSLQAATNITRPVLPPPQNLPDWEDVIVGAATIYEDGDIQ
ASSISSWRPPQILRMPISETLSHLRLQAHEPKRVAPAPRGWCVKKKFKTV
*
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mRNA from alignment at chr8:728343..729245-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G02580.1 ID=NO08G02580.1|Name=NO08G02580.1|organism=Nannochloropsis oceanica|type=mRNA|length=903bp|location=Sequence derived from alignment at chr8:728343..729245- (Nannochloropsis oceanica)
ATGGCGCAGGACAAGAGCCGCGTTCCCGACAAGCCGCCGTTGTCGCAAAT
ACCAAAGTGTCCGCTGGTAGCACCATCATCATCCTTCCCAGAAAGAATGC
GAGTGCCGTCAGAGCTAGAGACAGCAGTGGCGCCCCAACCATTCCTTCTC
CAGCCCCCACGTCTCGTGCGCGTTCTCTTCGTCGATACGTATGTAGCGCG
TGCAAGCGAGATCCGGCGGGCGCTGGAGCACGAGTCGCGCGGCGGCTTGT
TCCCGGAACTGGTGGCGGCATTCGACGTGGTACGAGAGGGCTTGGAAGCC
TTGGCCCTCGCTCAGGTCGTGCCTTACGATGCGGTATTCCTCTCGGCGGG
ATTGCGTGACATAACGGCAGATGAGCTGGTGGGAGACATTATGAAAATTG
GTTTGCGTGTGCCCTTGGTCCTGATGGCCGCGCCACACACCGTCGACACC
CAAAAGGCAGCTGCCTGTGGCTTCAACGCCATATTGTTGCGGCCTGTGAC
GGGAGCAGGCTTGGTCGGTGTGATCCGGGCCTTGTGTCTGTCACCACCAC
CATCGACAAGCCAACAGTCAGAAATGTTAGGACCTGCATCCCAAGCAGTA
GCGCGTGCCTCGCACGCCTCCCCTTCCTCCTCCTCCCTACAGGCTGCAAC
TAATATAACGCGCCCCGTCCTTCCTCCCCCACAAAACCTGCCTGATTGGG
AGGATGTAATTGTAGGGGCTGCTACTATCTACGAGGATGGCGATATTCAA
GCCTCTTCGATATCGTCTTGGCGGCCACCTCAAATTCTGCGCATGCCTAT
TAGCGAGACCTTGAGTCATCTTCGCCTCCAAGCGCATGAGCCCAAGAGAG
TAGCACCTGCACCTCGAGGATGGTGTGTAAAGAAGAAATTCAAGACAGTG
TAG
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Coding sequence (CDS) from alignment at chr8:728343..729245-

>NO08G02580.1 ID=NO08G02580.1|Name=NO08G02580.1|organism=Nannochloropsis oceanica|type=CDS|length=903bp|location=Sequence derived from alignment at chr8:728343..729245- (Nannochloropsis oceanica)
ATGGCGCAGGACAAGAGCCGCGTTCCCGACAAGCCGCCGTTGTCGCAAAT
ACCAAAGTGTCCGCTGGTAGCACCATCATCATCCTTCCCAGAAAGAATGC
GAGTGCCGTCAGAGCTAGAGACAGCAGTGGCGCCCCAACCATTCCTTCTC
CAGCCCCCACGTCTCGTGCGCGTTCTCTTCGTCGATACGTATGTAGCGCG
TGCAAGCGAGATCCGGCGGGCGCTGGAGCACGAGTCGCGCGGCGGCTTGT
TCCCGGAACTGGTGGCGGCATTCGACGTGGTACGAGAGGGCTTGGAAGCC
TTGGCCCTCGCTCAGGTCGTGCCTTACGATGCGGTATTCCTCTCGGCGGG
ATTGCGTGACATAACGGCAGATGAGCTGGTGGGAGACATTATGAAAATTG
GTTTGCGTGTGCCCTTGGTCCTGATGGCCGCGCCACACACCGTCGACACC
CAAAAGGCAGCTGCCTGTGGCTTCAACGCCATATTGTTGCGGCCTGTGAC
GGGAGCAGGCTTGGTCGGTGTGATCCGGGCCTTGTGTCTGTCACCACCAC
CATCGACAAGCCAACAGTCAGAAATGTTAGGACCTGCATCCCAAGCAGTA
GCGCGTGCCTCGCACGCCTCCCCTTCCTCCTCCTCCCTACAGGCTGCAAC
TAATATAACGCGCCCCGTCCTTCCTCCCCCACAAAACCTGCCTGATTGGG
AGGATGTAATTGTAGGGGCTGCTACTATCTACGAGGATGGCGATATTCAA
GCCTCTTCGATATCGTCTTGGCGGCCACCTCAAATTCTGCGCATGCCTAT
TAGCGAGACCTTGAGTCATCTTCGCCTCCAAGCGCATGAGCCCAAGAGAG
TAGCACCTGCACCTCGAGGATGGTGTGTAAAGAAGAAATTCAAGACAGTG
TAG
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Synonyms
Publications