NO08G02460.1, NO08G02460.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G02460.1
Unique NameNO08G02460.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length861
Alignment locationchr8:710434..711702 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:710434..711702 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G02460.1 vs.
Match: EWM26580.1 (mitochondrial carrier [Nannochloropsis gaditana])

HSP 1 Score: 480.3 bits (1235), Expect = 4.100e-132
Identity = 243/287 (84.67%), Postives = 260/287 (90.59%), Query Frame = 0 
Query:    1 MAPLGKNASPQDLFNGAVLQCVEAATLGMPLEVWKTRMGRFRAETTVEAFKNVYTEGG-LGAFWRGTSAKMVESASKGAILLFSKEAIANSLLASGVSQTTTGFVAGAGGGVCQVVVMGPCTFLVTAAVTGGKQHVGVFSKASEVWQSKGIKGFYPGGTAIAFRQATNWASRQGFTEAVREQFKILLHDGDKTAKLTVAQEAWAGIIGGALSCWNHPFEVARIEMQASASAGEASRSMGKVMQAIVTQEGVGGLFKGVIPRVFLGIWQTLFMVTGAKLVKNALEGGK 287
            MAPL KNASPQDLFNGAVLQCVEAATLGMP EVWKTRMGRFR E+T+EAF+NVY +GG + AFWRGTSAKMVESASKGAILLFSKEAIANSLLASGVSQTTTGF+AGAGGGVCQVVVMGPCTFLVTAAVTGG + V V++ A EVW SKGIKGFYPGGTAIAFRQATNWASRQGFTEAVRE+FK+L HDGD  AKLTV QEA+AGIIGGALSCWNHPFEVARIEMQA+A+AGEASRSM KVM  IVT EG  GLFKGV+PR+ LGIWQTLFMVTGAKL+K  L  GK
Sbjct:    1 MAPLSKNASPQDLFNGAVLQCVEAATLGMPFEVWKTRMGRFRTESTLEAFRNVYKDGGGVSAFWRGTSAKMVESASKGAILLFSKEAIANSLLASGVSQTTTGFLAGAGGGVCQVVVMGPCTFLVTAAVTGGGKEVSVWTTAREVWLSKGIKGFYPGGTAIAFRQATNWASRQGFTEAVRERFKVLFHDGDSKAKLTVTQEAFAGIIGGALSCWNHPFEVARIEMQAAANAGEASRSMLKVMSGIVTTEGPAGLFKGVVPRILLGIWQTLFMVTGAKLLKGFLADGK 287
The following BLAST results are available for this feature:
BLAST of NO08G02460.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26580.14.100e-13284.67mitochondrial carrier [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G02460NO08G02460Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G02460.1NO08G02460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G02460.1.cds1NO08G02460.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G02460.1.cds2NO08G02460.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G02460.1.cds3NO08G02460.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G02460.1.cds4NO08G02460.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G02460.1 ID=NO08G02460.1|Name=NO08G02460.1|organism=Nannochloropsis oceanica|type=mRNA|length=861bp
ATGGCGCCTCTAGGCAAAAACGCAAGCCCGCAGGACCTGTTCAATGGTGC
AGTTTTGCAATGTGTGGAAGCGGCCACGCTTGGAATGCCTCTAGAGGTGT
GGAAGACTCGGATGGGACGTTTTCGGGCCGAGACGACGGTAGAGGCTTTC
AAAAACGTCTACACGGAAGGAGGCCTTGGTGCCTTCTGGCGGGGGACGAG
TGCGAAGATGGTGGAATCAGCAAGCAAGGGGGCTATTTTGCTGTTTTCCA
AGGAGGCTATAGCTAATTCTTTGCTTGCATCCGGTGTCTCTCAAACAACG
ACCGGGTTCGTGGCCGGCGCAGGCGGTGGTGTTTGCCAAGTGGTGGTCAT
GGGACCGTGCACTTTCCTGGTAACGGCGGCCGTGACGGGTGGGAAGCAAC
ACGTGGGGGTATTTTCCAAGGCGAGCGAAGTATGGCAGAGCAAGGGCATC
AAGGGTTTCTATCCGGGCGGTACCGCGATTGCCTTCCGTCAAGCCACCAA
CTGGGCCTCGCGGCAAGGATTTACCGAGGCCGTACGGGAGCAATTTAAGA
TCCTCTTGCACGACGGGGACAAGACGGCCAAGCTAACCGTGGCACAGGAG
GCGTGGGCAGGCATCATTGGAGGAGCATTATCTTGTTGGAACCATCCGTT
CGAAGTGGCACGGATCGAGATGCAGGCTTCTGCCAGCGCGGGCGAGGCGT
CGCGGTCCATGGGGAAGGTGATGCAGGCCATCGTGACGCAAGAGGGCGTG
GGCGGGCTCTTCAAGGGGGTTATTCCAAGGGTGTTCCTAGGGATTTGGCA
AACGCTTTTTATGGTCACGGGGGCAAAACTTGTCAAGAATGCTTTGGAAG
GTGGTAAATAG
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protein sequence of NO08G02460.1

>NO08G02460.1-protein ID=NO08G02460.1-protein|Name=NO08G02460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=287bp
MAPLGKNASPQDLFNGAVLQCVEAATLGMPLEVWKTRMGRFRAETTVEAF
KNVYTEGGLGAFWRGTSAKMVESASKGAILLFSKEAIANSLLASGVSQTT
TGFVAGAGGGVCQVVVMGPCTFLVTAAVTGGKQHVGVFSKASEVWQSKGI
KGFYPGGTAIAFRQATNWASRQGFTEAVREQFKILLHDGDKTAKLTVAQE
AWAGIIGGALSCWNHPFEVARIEMQASASAGEASRSMGKVMQAIVTQEGV
GGLFKGVIPRVFLGIWQTLFMVTGAKLVKNALEGGK*
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mRNA from alignment at chr8:710434..711702-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G02460.1 ID=NO08G02460.1|Name=NO08G02460.1|organism=Nannochloropsis oceanica|type=mRNA|length=1269bp|location=Sequence derived from alignment at chr8:710434..711702- (Nannochloropsis oceanica)
ATGGCGCCTCTAGGCAAAAACGCAAGCCCGCAGGACCTGTTCAATGGTGC
AGTTTTGCAATGTGTGGAAGCGGCCACGCTTGGAATGCCTCTAGAGGTGT
GGAAGACTCGGATGGGACGTTTTCGGGCCGAGACGACGGTAGAGGCTTTC
AAAAACGTCTACACGGAAGGAGGCCTTGGTGCCTTCTGGCGGGGGACGAG
TGCGAAGATGGTGGAATCAGCAAGCAAGGGGGCTATTTTGCTGTTTTCCA
AGGAGGCTATAGCTAATTCTTTGCTTGCATCCGGTGTCTCTCAAACAACG
ACCGGGTAAGTTCGAGGCAGGGCTCTAGTATGGTTCGGAAGAAATCAGAG
CACGCTGTGGTGTTCATCAAGACGCCGGTGAGGCTGGGCGAGCAGTGTTT
GCCATTTTTTTGACTGCAATCACACTTCTCTACATTTTTACCTCACATGA
CAGGTTCGTGGCCGGCGCAGGCGGTGGTGTTTGCCAAGTGGTGGTCATGG
GACCGTGCACTTTCCTGGTAACGGCGGCCGTGACGGGTGGGAAGCAACAC
GTGGGGGTATTTTCCAAGGCGAGCGAAGTATGGCAGAGCAAGGGCATCAA
GGGTTTCTATCCGGGCGGTACCGCGATTGCCTTCCGTCAAGCCACCAACT
GGGCCTCGCGGCAAGGATTTACCGAGGCCGTACGGGAGCAATTTAAGATC
CTCTTGCACGACGGGGACAAGACGGCCAAGCTAACCGTGGCACAGGAGGC
GTGGGCAGGCATCATTGGAGGAGCATTATCTTGTTGGAACCATCCGTTCG
TAAGTCCTCGGGCCCTCCTTCCTTACGTGTGTGTATGCCTTATGTTATGC
GTATTGCATGCACATTTCCTTTTTAAATACGAACGCTGTACGTAAGTCAA
ATGGCCTTCTCCTCCTTTTCTTTTCCTATTGCTTTTCCTGTTTTCACAGG
AAGTGGCACGGATCGAGATGCAGGCTTCTGCCAGCGCGGGCGAGGCGTCG
CGGTCCATGGGGAAGGTGATGCAGGCCATCGTGACGCAAGAGGGCGTGGG
CGGGCTCTTCAAGGGGGTTATTCCAAGGGTGTTCCTAGGTAGGATAGGTT
AGGGATAGTGTTGAGACGACTAAGGAGGATATGCCACCGCGCTGATCCCT
TCTCATCCCCTCCCTCCCTTCCCTTTCTCACTACTTTCACACATACAGGG
ATTTGGCAAACGCTTTTTATGGTCACGGGGGCAAAACTTGTCAAGAATGC
TTTGGAAGGTGGTAAATAG
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Coding sequence (CDS) from alignment at chr8:710434..711702-

>NO08G02460.1 ID=NO08G02460.1|Name=NO08G02460.1|organism=Nannochloropsis oceanica|type=CDS|length=861bp|location=Sequence derived from alignment at chr8:710434..711702- (Nannochloropsis oceanica)
ATGGCGCCTCTAGGCAAAAACGCAAGCCCGCAGGACCTGTTCAATGGTGC
AGTTTTGCAATGTGTGGAAGCGGCCACGCTTGGAATGCCTCTAGAGGTGT
GGAAGACTCGGATGGGACGTTTTCGGGCCGAGACGACGGTAGAGGCTTTC
AAAAACGTCTACACGGAAGGAGGCCTTGGTGCCTTCTGGCGGGGGACGAG
TGCGAAGATGGTGGAATCAGCAAGCAAGGGGGCTATTTTGCTGTTTTCCA
AGGAGGCTATAGCTAATTCTTTGCTTGCATCCGGTGTCTCTCAAACAACG
ACCGGGTTCGTGGCCGGCGCAGGCGGTGGTGTTTGCCAAGTGGTGGTCAT
GGGACCGTGCACTTTCCTGGTAACGGCGGCCGTGACGGGTGGGAAGCAAC
ACGTGGGGGTATTTTCCAAGGCGAGCGAAGTATGGCAGAGCAAGGGCATC
AAGGGTTTCTATCCGGGCGGTACCGCGATTGCCTTCCGTCAAGCCACCAA
CTGGGCCTCGCGGCAAGGATTTACCGAGGCCGTACGGGAGCAATTTAAGA
TCCTCTTGCACGACGGGGACAAGACGGCCAAGCTAACCGTGGCACAGGAG
GCGTGGGCAGGCATCATTGGAGGAGCATTATCTTGTTGGAACCATCCGTT
CGAAGTGGCACGGATCGAGATGCAGGCTTCTGCCAGCGCGGGCGAGGCGT
CGCGGTCCATGGGGAAGGTGATGCAGGCCATCGTGACGCAAGAGGGCGTG
GGCGGGCTCTTCAAGGGGGTTATTCCAAGGGTGTTCCTAGGGATTTGGCA
AACGCTTTTTATGGTCACGGGGGCAAAACTTGTCAAGAATGCTTTGGAAG
GTGGTAAATAG
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Synonyms
Publications