NO08G02450.1, NO08G02450.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G02450.1
Unique NameNO08G02450.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length393
Alignment locationchr8:709571..710068 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:709571..710068 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G02450.1 vs.
Match: EWM26597.1 (dpy-30-like protein [Nannochloropsis gaditana])

HSP 1 Score: 115.9 bits (289), Expect = 9.200e-23
Identity = 72/138 (52.17%), Postives = 86/138 (62.32%), Query Frame = 0 
Query:    1 MEKTSEMIQHTQPAAAGAPETSETVAASMNTGGGGSNAQQDTPSPALDEDGGGIQGAGEDDKKKM--------AVAAAAAQQEQDKANMQSLPIRAYLDQTVVPILLDGMSQLVQERPGNPIEWLAAYLIKNNPQKSE 131
            +++ ++   H QP A G        ++++ +G        D PSPA  E  G I G  +++  +         A  AA AQ EQDK NMQSLPIRAYLDQTVVPILLDGMSQLV ERP NPIEWLAAYLIKNNPQK E
Sbjct:    6 VDERAQQAPHNQPTADGGEGELTATSSAIVSG--------DAPSPASGERNGMIVGQQKEEIAESHGVNDGEGAGTAAVAQHEQDKVNMQSLPIRAYLDQTVVPILLDGMSQLVVERPSNPIEWLAAYLIKNNPQKFE 135
The following BLAST results are available for this feature:
BLAST of NO08G02450.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26597.19.200e-2352.17dpy-30-like protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G02450NO08G02450Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G02450.1NO08G02450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G02450.1.cds1NO08G02450.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G02450.1.cds2NO08G02450.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G02450.1 ID=NO08G02450.1|Name=NO08G02450.1|organism=Nannochloropsis oceanica|type=mRNA|length=393bp
ATGGAAAAGACCAGCGAGATGATTCAACATACACAGCCAGCGGCGGCAGG
AGCACCCGAAACGAGCGAAACCGTAGCAGCATCCATGAATACGGGTGGTG
GTGGTAGCAATGCGCAGCAGGACACACCGTCCCCTGCCCTCGACGAGGAC
GGAGGTGGCATTCAGGGAGCAGGGGAGGATGACAAGAAAAAGATGGCAGT
GGCCGCAGCAGCCGCGCAGCAAGAGCAAGACAAGGCAAATATGCAGTCCT
TGCCCATCCGTGCCTACTTGGATCAGACTGTGGTGCCCATTCTTTTAGAC
GGTATGTCGCAACTGGTCCAGGAGCGGCCTGGCAATCCGATCGAGTGGTT
GGCAGCCTACCTCATCAAAAACAACCCCCAAAAGTCCGAGTAG
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protein sequence of NO08G02450.1

>NO08G02450.1-protein ID=NO08G02450.1-protein|Name=NO08G02450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=131bp
MEKTSEMIQHTQPAAAGAPETSETVAASMNTGGGGSNAQQDTPSPALDED
GGGIQGAGEDDKKKMAVAAAAAQQEQDKANMQSLPIRAYLDQTVVPILLD
GMSQLVQERPGNPIEWLAAYLIKNNPQKSE*
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mRNA from alignment at chr8:709571..710068+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G02450.1 ID=NO08G02450.1|Name=NO08G02450.1|organism=Nannochloropsis oceanica|type=mRNA|length=498bp|location=Sequence derived from alignment at chr8:709571..710068+ (Nannochloropsis oceanica)
ATGGAAAAGACCAGCGAGATGATTCAACATGTGAGTGATAAATAGTATGT
GTGCACAGAGAAAGCGAGGAGAAAGCGAAGAAGCGAAGAACCGGTCGCGC
GCTTATTACAACCCACTCCTTTCCCGCACAAGCAGACACAGCCAGCGGCG
GCAGGAGCACCCGAAACGAGCGAAACCGTAGCAGCATCCATGAATACGGG
TGGTGGTGGTAGCAATGCGCAGCAGGACACACCGTCCCCTGCCCTCGACG
AGGACGGAGGTGGCATTCAGGGAGCAGGGGAGGATGACAAGAAAAAGATG
GCAGTGGCCGCAGCAGCCGCGCAGCAAGAGCAAGACAAGGCAAATATGCA
GTCCTTGCCCATCCGTGCCTACTTGGATCAGACTGTGGTGCCCATTCTTT
TAGACGGTATGTCGCAACTGGTCCAGGAGCGGCCTGGCAATCCGATCGAG
TGGTTGGCAGCCTACCTCATCAAAAACAACCCCCAAAAGTCCGAGTAG
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Coding sequence (CDS) from alignment at chr8:709571..710068+

>NO08G02450.1 ID=NO08G02450.1|Name=NO08G02450.1|organism=Nannochloropsis oceanica|type=CDS|length=393bp|location=Sequence derived from alignment at chr8:709571..710068+ (Nannochloropsis oceanica)
ATGGAAAAGACCAGCGAGATGATTCAACATACACAGCCAGCGGCGGCAGG
AGCACCCGAAACGAGCGAAACCGTAGCAGCATCCATGAATACGGGTGGTG
GTGGTAGCAATGCGCAGCAGGACACACCGTCCCCTGCCCTCGACGAGGAC
GGAGGTGGCATTCAGGGAGCAGGGGAGGATGACAAGAAAAAGATGGCAGT
GGCCGCAGCAGCCGCGCAGCAAGAGCAAGACAAGGCAAATATGCAGTCCT
TGCCCATCCGTGCCTACTTGGATCAGACTGTGGTGCCCATTCTTTTAGAC
GGTATGTCGCAACTGGTCCAGGAGCGGCCTGGCAATCCGATCGAGTGGTT
GGCAGCCTACCTCATCAAAAACAACCCCCAAAAGTCCGAGTAG
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Synonyms
Publications