NO08G02420.1, NO08G02420.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO08G02420.1
Unique Name	NO08G02420.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3308
Alignment location	chr8:703729..707822 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr8	genome	chr8:703729..707822 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO08G02420.1 vs.
Match: GAX94708.1 (SCO1 family protein [Pythium insidiosum])

HSP 1 Score: 278.5 bits (711), Expect = 2.300e-71
Identity = 140/247 (56.68%), Postives = 175/247 (70.85%), Query Frame = 0

Query:   28 PLSRRPMTTIKAPPDAAIKTAASSPARGGGPPTGSSKIDKM-PVTWASLGLMAVTGAGLAYYYQGEKEKKQQQALGKVTSYGKPALGGPWTLVDF-TGKPVTDADFRGEFLLLYFGFTHCPDICPSELVKVGRILDLLDKEPRLPMVRPVFISVDPDRDNVGQLRHYAQDFHPRILYLTGTQEQLAKVTKGYRVYFSKADE--EDEENYLVDHSIVLYLIGPDGSFLDFFTQSMQPTDIVNRIKGYL 271
            PL R  +        +A++ A SS A        + + DKM P+TW+SL L +V GAG  YYY  EKE+ Q Q   KV S GKP LGGPWTLVD  TG+ VTDA FRG+F LLYFGFTHCPDICP+ELV++G +LD L KE   P V P+FI+VDP+RD + Q+  Y +DFHP    LTGT++Q+A +TK YRVYFSKADE  +D+++YLVDHSIV+YL+GPDG FLDFFTQS +  DIV +IK +L
Sbjct:   10 PLRRALLQRPNVLATSAVRRAFSSQA--------TPRSDKMGPITWSSLALASVVGAGAVYYYYTEKERLQTQTTSKVVSIGKPLLGGPWTLVDCDTGRAVTDASFRGKFTLLYFGFTHCPDICPNELVRIGDVLDKLSKEENAPEVLPLFITVDPNRDTIAQMLEYKKDFHPSFKMLTGTRDQVADITKSYRVYFSKADENDDDDDDYLVDHSIVMYLVGPDGQFLDFFTQSARVDDIVKKIKTHL 248

The following BLAST results are available for this feature:

BLAST of NO08G02420.1 vs.

BLAST of NO08G02420.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
GAX94708.1	2.300e-71	56.68	SCO1 family protein [Pythium insidiosum]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO08G02420	NO08G02420	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO08G02420.1	NO08G02420.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO08G02420.1.cds1	NO08G02420.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G02420.1.cds2	NO08G02420.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G02420.1.cds3	NO08G02420.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G02420.1.cds4	NO08G02420.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G02420.1.cds5	NO08G02420.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr8:703729..707822-
coding sequence from alignment at chr8:703729..707822-

mRNA sequence

>NO08G02420.1 ID=NO08G02420.1|Name=NO08G02420.1|organism=Nannochloropsis oceanica|type=mRNA|length=3308bp
TCCGGACTAATTTGTTTTAGGGGTTCTGCGTGTGCCTCCTTCACACAGGC
ACCCGATCCGCCCATCCATAAAGTGATGGACTGACAGACAGAGGGACTGA
CTAATCGTATCAAGTAAAGGCGGGGAGACAGCCACTTCCCGACAGAGGCC
CAGACATTAAATGGTTGATGACAGACACATTTTTACTCGATCGATCCTGA
TTTTCGCTAATCAACAAAATTTACAGACAAAATAGGAAGTGGGAGATTGA
CGTGGATGCCTGTGATTAGTTTTCCCACTTGCTCAGTAGTTAGTGGACGG
CAAGGCAGTAAACTGCGCGACTTAACACTGCTTCACTTTTGCATCGTCGC
AGCAGGAGGGAGGATTTATCTCTTAATGTCTTTCTATCTATCCAAAAAAT
GCATCAGATCGGAGCGGAGGGCGTCCGCGACCGCCGTGGCAACCATGGAA
AAAATATGCGTCACGAGCACGAGTTCAGGGAAGTAGGCACTCGGGCATCC
GAAGAATTAGATGATGGTGTGGAACGTGTAGGGACATAAAACTTGCTTCG
CTCCACAAAGAGGAGGATGATTGTGTCCATGCTCACAACTGTGACGAGTA
CCTCCCTCTGCTTCCCACCTAGGTCCCGCACGGTCTGTGGGCGGTTCAGG
AACGATTGCGGCATCCCTAAACCCCCCAAGAATGAACTTATTTCCTCCGT
CTGGTCCACCTCGAAGGTCAAGGTGCCGAAGACCCGGTCGCTCTCCGAGG
GTTGCTTACCAAAGCCACCGGGTGACATTCGGCTTGTCTCCTCGCGGGTG
GTGATGGAGCTGACGGTGCTTGCTGCCATCGTGATCGCTTCAGAAGGGGA
AAATGAAGACGCAATCGCTTGCAAAGAGAAGGATCCATTTCGTAAAACTT
TAACAGTCGACCATGAGGCCCTAATCGTTCTTGCGATGCCCCGTCGCGTG
GAAGAATCTTCATCAATCTCCACCCTTCAAAAAACAGCCTAGTTCGTCGC
TCAGCTCGTTGCTTGCCTTGAATTCCCAGCGGTCTAAGCTGAAATTCATG
GAGGTATCTATCAAATGAGGAGAAGCAGATGAAATATCAAGAGTCTGGTG
AACACTGCCAAAAGAAAGAGAGGGCGTGGCGGAGGGAGGGAGGCCAGATG
CATGGATGCAAGTGGAAAAATATTCACTCCCATCACATGCCGTGAATGAG
GACGGAGACATCTCAAGTGGGTTCTTACAACAATCACGCATCATCGAGGA
CGGGTCGAGATGATCTCGACCCGTCCTCGAATACGTGGGACATACCTGAT
ACAGTGCTAGCGCCGTCGGATCCAAAGGCAGCAACGACGAGGAATATGTG
GTGAAGGAGATGGAAGACGACGTGGAGGAGGAAGAAGAATTCATAGCTGA
CACAAAATGAGTAATTTGGGGAGCTTCGTTACCGTAAATACCAAATCAGG
CTGCTGAGGAGCAGGTCAGGACTGATATCTTCGAATGGTGGAGGAAGGCG
TCGGAGGCCGGCATCCTCTGCAGCCAGGTGAGGATAAGAAGTAGCATTAC
TGTGTATTTGTAGAGAATGAGGAAGGAAGAAGTGTGAGGAAAGGTTGTAA
GTAAAGAAAGTACAGATTGCCCCCTATTATTTCCCACACATCCGGGAGCC
TGGGGTACGTATGTGTCTAATGAGCCCGAGACATGTGTCGTTGAGATGAG
GGAAGCAAGCAAGGGCAGTACCCTAACATCCCCGAGGCCTTTCGTGCACT
CAATCCTTTTTTGGACACGTTCGGACGATGCCGCTTGGCACGAGGCGAAC
GCGTCAAAAGAATAACGGCCCCTGTGCGCACGCGCGGGCGTAAAACAGTA
GTTAACGCAACGCGACGAAGCAACTTTAGCGCCGGGCTTCGAGGTTCCCC
AAGTGAGCACTTACCGAGTCCGTATGTGAGCACCGGCCGCGTCACAATTA
GCCTTTGACGTCTCACCTTTCGTCAATCGAGCAATCAATTTCCTCTGAGA
GTTTTCGCGAAGCACGGGCGCGTAGCGCTATAGCTGTAGTCTATTATCAT
GATGCGTCACATGCATGTTCACATATTATTTGGCGTTGGCGTGGCATGTT
TGGCTCAGAGATCTGATAAGACACTTTTGCCGCAGCAGTCAGACACTGTA
CCGTGCATAGCATCACATCCTCATGGTCAGGGCACTCATATTGTACAGAT
TTGAAACATCTCGGGGCTTGTGCGGCTCTGGCACCTGTCTTGACCAGTCT
CGTCGCTGCCGACTGACTCCACCTCCTCTCCTCCCTCTTCGTCCTTGCTT
GTCAGAGTCTACCTCAAGCACCCCATTCACCCCATTCACAGGCAATCATG
AATCCCGCGCTCAAGGTGGGCCTATTCAATGGCCGAATCTTTCCCTCGCT
CTCACTCCTCAGAGGAGCAATACGCGCACCCCTCTCACGCCGCCCCATGA
CTACCATTAAGGCACCGCCAGACGCCGCCATCAAAACCGCAGCATCATCT
CCAGCAAGGGGTGGAGGACCACCAACCGGTAGCAGCAAGATTGATAAAAT
GCCTGTAACGTGGGCGAGCCTGGGCCTCATGGCGGTGACGGGCGCTGGCC
TCGCGTACTACTACCAAGGCGAGAAGGAGAAGAAGCAGCAACAAGCCTTG
GGCAAGGTGACAAGTTACGGAAAGCCGGCACTCGGCGGGCCTTGGACGCT
GGTGGATTTCACCGGCAAGCCTGTGACTGACGCGGACTTCCGCGGCGAGT
TTTTGTTACTGTACTTCGGCTTCACGCACTGCCCTGACATCTGCCCCTCC
GAGCTGGTCAAGGTGGGCAGGATCTTGGACCTGCTTGACAAGGAGCCGCG
CCTGCCCATGGTGCGCCCTGTCTTCATTTCCGTTGATCCCGACCGTGATA
ATGTGGGCCAGCTCCGGCACTACGCTCAAGACTTTCACCCGCGTATCTTG
TATTTGACGGGCACGCAGGAGCAGCTGGCTAAGGTGACCAAAGGTTACCG
AGTCTACTTCAGCAAGGCGGACGAGGAGGACGAGGAGAATTACCTGGTAG
ATCACTCCATCGTGTTGTACCTCATCGGGCCCGATGGCTCCTTCCTGGAT
TTCTTCACGCAGTCCATGCAACCTACCGATATTGTGAACCGTATTAAGGG
CTATCTTGGCCAAGCAAGGCGGGTTGATACGTAAGACGCATACACACATA
TGAAGAATCGAAAAAATGAGCGCCATGGCGAAATCGATGAGTCAATAGCT
TGAAGTGTGTGAAATAGGGCACGAAATAAACATCGAATATCCGTTTCCTC
TTCTCAAG

protein sequence of NO08G02420.1

>NO08G02420.1-protein ID=NO08G02420.1-protein|Name=NO08G02420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=279bp
MNPALKVGLFNGRIFPSLSLLRGAIRAPLSRRPMTTIKAPPDAAIKTAAS
SPARGGGPPTGSSKIDKMPVTWASLGLMAVTGAGLAYYYQGEKEKKQQQA
LGKVTSYGKPALGGPWTLVDFTGKPVTDADFRGEFLLLYFGFTHCPDICP
SELVKVGRILDLLDKEPRLPMVRPVFISVDPDRDNVGQLRHYAQDFHPRI
LYLTGTQEQLAKVTKGYRVYFSKADEEDEENYLVDHSIVLYLIGPDGSFL
DFFTQSMQPTDIVNRIKGYLGQARRVDT*

mRNA from alignment at chr8:703729..707822-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO08G02420.1 ID=NO08G02420.1|Name=NO08G02420.1|organism=Nannochloropsis oceanica|type=mRNA|length=4094bp|location=Sequence derived from alignment at chr8:703729..707822- (Nannochloropsis oceanica)
TCCGGACTAATTTGTTTTAGGGGTTCTGCGTGTGCCTCCTTCACACAGGC
ACCCGATCCGCCCATCCATAAAGTGATGGACTGACAGACAGAGGGACTGA
CTAATCGTATCAAGTAAAGGCGGGGAGACAGCCACTTCCCGACAGAGGCC
CAGACATTAAATGGTTGATGACAGACACATTTTTACTCGATCGATCCTGA
TTTTCGCTAATCAACAAAATTTACAGACAAAATAGGAAGTGGGAGATTGA
CGTGGATGCCTGTGATTAGTTTTCCCACTTGCTCAGTAGTTAGTGGACGG
CAAGGCAGTAAACTGCGCGACTTAACACTGCTTCACTTTTGCATCGTCGC
AGCAGGAGGGAGGATTTATCTCTTAATGTCTTTCTATCTATCCAAAAAAT
GCATCAGATCGGAGCGGAGGGCGTCCGCGACCGCCGTGGCAACCATGGAA
AAAATATGCGTCACGAGCACGAGTTCAGGGAAGTAGGCACTCGGGCATCC
GAAGAATTAGATGATGGTGTGGAACGTGTAGGGACATAAAACTTGCTTCG
CTCCACAAAGAGGAGGATGATTGTGTCCATGCTCACAACTGTGACGAGTA
CCTCCCTCTGCTTCCCACCTAGGTCCCGCACGGTCTGTGGGCGGTTCAGG
AACGATTGCGGCATCCCTAAACCCCCCAAGAATGAACTTATTTCCTCCGT
CTGGTCCACCTCGAAGGTCAAGGTGCCGAAGACCCGGTCGCTCTCCGAGG
GTTGCTTACCAAAGCCACCGGGTGACATTCGGCTTGTCTCCTCGCGGGTG
GTGATGGAGCTGACGGTGCTTGCTGCCATCGTGATCGCTTCAGAAGGGGA
AAATGAAGACGCAATCGCTTGCAAAGAGAAGGATCCATTTCGTAAAACTT
TAACAGTCGACCATGAGGCCCTAATCGTTCTTGCGATGCCCCGTCGCGTG
GAAGAATCTTCATCAATCTCCACCCTTCAAAAAACAGCCTAGTTCGTCGC
TCAGCTCGTTGCTTGCCTTGAATTCCCAGCGGTCTAAGCTGAAATTCATG
GAGGTATCTATCAAATGAGGAGAAGCAGATGAAATATCAAGAGTCTGGTG
AACACTGCCAAAAGAAAGAGAGGGCGTGGCGGAGGGAGGGAGGCCAGATG
CATGGATGCAAGTGGAAAAATATTCACTCCCATCACATGCCGTGAATGAG
GACGGAGACATCTCAAGTGGGTTCTTACAACAATCACGCATCATCGAGGA
CGGGTCGAGATGATCTCGACCCGTCCTCGAATACGTGGGACATACCTGAT
ACAGTGCTAGCGCCGTCGGATCCAAAGGCAGCAACGACGAGGAATATGTG
GTGAAGGAGATGGAAGACGACGTGGAGGAGGAAGAAGAATTCATAGCTGA
CACAAAATGAGTAATTTGGGGAGCTTCGTTACCGTAAATACCAAATCAGG
CTGCTGAGGAGCAGGTCAGGACTGATATCTTCGAATGGTGGAGGAAGGCG
TCGGAGGCCGGCATCCTCTGCAGCCAGGTGAGGATAAGAAGTAGCATTAC
TGTGTATTTGTAGAGAATGAGGAAGGAAGAAGTGTGAGGAAAGGTTGTAA
GTAAAGAAAGTACAGATTGCCCCCTATTATTTCCCACACATCCGGGAGCC
TGGGGTACGTATGTGTCTAATGAGCCCGAGACATGTGTCGTTGAGATGAG
GGAAGCAAGCAAGGGCAGTACCCTAACATCCCCGAGGCCTTTCGTGCACT
CAATCCTTTTTTGGACACGTTCGGACGATGCCGCTTGGCACGAGGCGAAC
GCGTCAAAAGAATAACGGCCCCTGTGCGCACGCGCGGGCGTAAAACAGTA
GTTAACGCAACGCGACGAAGCAACTTTAGCGCCGGGCTTCGAGGTTCCCC
AAGTGAGCACTTACCGAGTCCGTATGTGAGCACCGGCCGCGTCACAATTA
GCCTTTGACGTCTCACCTTTCGTCAATCGAGCAATCAATTTCCTCTGAGA
GTTTTCGCGAAGCACGGGCGCGTAGCGCTATAGCTGTAGTCTATTATCAT
GATGCGTCACATGCATGTTCACATATTATTTGGCGTTGGCGTGGCATGTT
TGGCTCAGAGATCTGATAAGACACTTTTGCCGCAGCAGTCAGACACTGTA
CCGTGCATAGCATCACATCCTCATGGTCAGGGCACTCATATTGTACAGAT
TTGAAACATCTCGGGGCTTGTGCGGCTCTGGCACCTGTCTTGACCAGTCT
CGTCGCTGCCGACTGACTCCACCTCCTCTCCTCCCTCTTCGTCCTTGCTT
GTCAGAGTCTACCTCAAGCACCCCATTCACCCCATTCACAGGCAATCATG
AATCCCGCGCTCAAGGTGGGCCTATTCAATGGCCGAATCTTTCCCTCGCT
CTCACTCCTCAGAGGAGCAATACGCGCACCCCTCTCACGCCGCCCCATGA
CTACCATTAAGGCACCGCCAGACGCCGCCATCAAAACCGCAGCATCATCT
CCAGCAAGGGGTGGAGGACCACCAACCGGTAGCAGCAAGATTGATAAAAT
GGTAAGTTTGGGTTTGGAGGTTGTAAAATGCCGCGAACTCATCATATAGC
ACCCGCCCCACCTCACGCCGGGATGCACAGCAAAGGTACCAGAGAGACAA
GAGAAGTTTGGGCGACAAAGAGTGGCACATTACCTGGTGATCTAACCCCG
TCAGTGCCCCCTTAAGTGAAGAGGCTTTTTTGGAGGGGGAAGGATGGCAA
CATGCAATACTCTGCGCTTCAGATGAGGAGCGAGTATATACCAGTTTGTA
CCTCTGCCTCTGCCCCTCCTCTATTTTCATCATTATACTGTAACGGGTCG
AAAATTAAATGGAAACCTCGCTGCAATCAACTCACCATCCCATCCCACTC
TCAAAATCTACTCTCAAGCCTGTAACGTGGGCGAGCCTGGGCCTCATGGC
GGTGACGGGCGCTGGCCTCGCGTACTACTACCAAGGCGAGAAGGAGAAGA
AGCAGCAACAAGGTATCCTAGTCGTGTCGCGTTCATCTCTTTCTTTTCCT
TGGAAGCATTTTCTCTGTTTCTATCATTTTTCTCTCTCTTTCGCACACGG
CATTCACGCTCTTCCTTCGCTTTCTTCTGGTCCCTCCCTCCTCTTTACTC
CACAAACTACTCAGCCTTGGGCAAGGTGACAAGTTACGGAAAGCCGGCAC
TCGGCGGGCCTTGGACGCTGGTGGATTTCACCGGCAAGCCTGTGACTGAC
GCGGACTTCCGCGGCGAGTTTTTGTTACTGTACTTCGGCTTCACGCACTG
CCCTGACATCTGCCCCTCCGAGCTGGTCAAGGTGGGCAGGATCTTGGACC
TGCTTGACAAGGAGCCGCGCCTGCCCATGGTGCGCCCTGTCTTCATTTCC
GTTGATCCCGACCGTGATAATGTGGGCCAGCTCCGGCACTACGCTCAAGG
TGCGTTGTCTTGGGTGGTGAAAAAGCAGCGGGGTGAGGGGGATTAAGGGA
TAGGGAAGAGATGCGATGCCGAGTGACAGTGAATGGAAAGCAGCGCACTC
TTACTGCTGTCTGTAGTTACGAGCAGCACTCTGACCGAATTTCTCTCTCG
CTCCTCTTACGCCCACTAGACTTTCACCCGCGTATCTTGTATTTGACGGG
CACGCAGGAGCAGCTGGCTAAGGTGACCAAAGGTTACCGAGTCTACTTCA
GCAAGGTACGTGAAAGGCCGTTACAAAGATAGGAAAGCTTGTTGATGGAT
TTATAAATTAGTCCCGTGTTCCACCTGTCATCGCCTTGATACCACTGCGC
AGGCGGACGAGGAGGACGAGGAGAATTACCTGGTAGATCACTCCATCGTG
TTGTACCTCATCGGGCCCGATGGCTCCTTCCTGGATTTCTTCACGCAGTC
CATGCAACCTACCGATATTGTGAACCGTATTAAGGGCTATCTTGGCCAAG
CAAGGCGGGTTGATACGTAAGACGCATACACACATATGAAGAATCGAAAA
AATGAGCGCCATGGCGAAATCGATGAGTCAATAGCTTGAAGTGTGTGAAA
TAGGGCACGAAATAAACATCGAATATCCGTTTCCTCTTCTCAAG

Coding sequence (CDS) from alignment at chr8:703729..707822-

>NO08G02420.1 ID=NO08G02420.1|Name=NO08G02420.1|organism=Nannochloropsis oceanica|type=CDS|length=837bp|location=Sequence derived from alignment at chr8:703729..707822- (Nannochloropsis oceanica)
ATGAATCCCGCGCTCAAGGTGGGCCTATTCAATGGCCGAATCTTTCCCTC
GCTCTCACTCCTCAGAGGAGCAATACGCGCACCCCTCTCACGCCGCCCCA
TGACTACCATTAAGGCACCGCCAGACGCCGCCATCAAAACCGCAGCATCA
TCTCCAGCAAGGGGTGGAGGACCACCAACCGGTAGCAGCAAGATTGATAA
AATGCCTGTAACGTGGGCGAGCCTGGGCCTCATGGCGGTGACGGGCGCTG
GCCTCGCGTACTACTACCAAGGCGAGAAGGAGAAGAAGCAGCAACAAGCC
TTGGGCAAGGTGACAAGTTACGGAAAGCCGGCACTCGGCGGGCCTTGGAC
GCTGGTGGATTTCACCGGCAAGCCTGTGACTGACGCGGACTTCCGCGGCG
AGTTTTTGTTACTGTACTTCGGCTTCACGCACTGCCCTGACATCTGCCCC
TCCGAGCTGGTCAAGGTGGGCAGGATCTTGGACCTGCTTGACAAGGAGCC
GCGCCTGCCCATGGTGCGCCCTGTCTTCATTTCCGTTGATCCCGACCGTG
ATAATGTGGGCCAGCTCCGGCACTACGCTCAAGACTTTCACCCGCGTATC
TTGTATTTGACGGGCACGCAGGAGCAGCTGGCTAAGGTGACCAAAGGTTA
CCGAGTCTACTTCAGCAAGGCGGACGAGGAGGACGAGGAGAATTACCTGG
TAGATCACTCCATCGTGTTGTACCTCATCGGGCCCGATGGCTCCTTCCTG
GATTTCTTCACGCAGTCCATGCAACCTACCGATATTGTGAACCGTATTAA
GGGCTATCTTGGCCAAGCAAGGCGGGTTGATACGTAA

Synonyms

Publications