NO08G02400.1, NO08G02400.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G02400.1
Unique NameNO08G02400.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1636
Alignment locationchr8:698078..700089 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:698078..700089 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G02400.1 vs.
Match: EWM26663.1 (hypothetical protein Naga_100001g149 [Nannochloropsis gaditana])

HSP 1 Score: 470.7 bits (1210), Expect = 5.700e-129
Identity = 274/461 (59.44%), Postives = 325/461 (70.50%), Query Frame = 0 
Query:   56 SVHPLLRLADLTENLMRKDARVGYPSAEPEVEPESFGWLFSAQQILLDHVLGDETRVVVQLGAYLGKTTLFIAEHAPRALIFVVDPWDNAVLKTEPSLNKNFANIDLFDRVPFYQTFLRNTWHLAARRRPDEGDRLVGVVPLRMGFDEGLALLKADLSLRPDVLYWEGFPDEAGLLQTLGTVKEAFPGVVVVGDGYNYPEVQAGLTRASKDLYQDRKPFVEMGKCWTYLRLKMGMLSELRAKYTATDNRAERTVLASKEVAGASFKDLLSGLKSKSRQLKDDEAEERAARRRAEEEERDRTHREREAEEEEERQRRWQEGY--KGR-----ETPQEGEARKDSAQEEKGGM-GCREYHGRRQRGRGRDRGEGRIGWRVWGQDYEGEGRG-----------RHETAGGGGNAVVPKRPRQEMEEDSEHKSQQRWDRNRRHGEVDESEDDEWTSRASGDEEDE 498
            + HPLLRL+D TE L+R D+RVGYP  +P+V PESFGWLF AQQILL++VL + TR+VVQLGAYLGKTTLFIAEHAPRALIFV+DPWDNA LK EPSLNKNFANIDLF+R+PFY TFLRNTWHLAARR  ++ + LVGVVPLRM F+EG+ALLK+ L+LRPDVLYWEGFP+E GL QTL  VKEAFPGVVVVGDGYNY EVQ GL +AS+ L+Q+RKPFVEMGKCWT+LRLK  MLS+LR KYTA DNRA+RT+L  KEVAGASFKDLLSGLKSKS+QLK +EA ERAARR AEEEERDR  + RE+ E   R R   +G   KG           GE+ +       GG  GC + HG R  G G +   G         D +G GRG           R E     G  +          E+S+ + ++ W R     E+DESEDDE    ++ + +D+
Sbjct:   35 TAHPLLRLSDQTEVLIRNDSRVGYPVEQPDVGPESFGWLFPAQQILLNYVLQEGTRIVVQLGAYLGKTTLFIAEHAPRALIFVIDPWDNAALKAEPSLNKNFANIDLFERIPFYATFLRNTWHLAARRGSNKDNLLVGVVPLRMKFEEGIALLKSTLNLRPDVLYWEGFPNETGLSQTLHAVKEAFPGVVVVGDGYNYSEVQKGLAKASRSLFQERKPFVEMGKCWTFLRLKKEMLSDLRLKYTAADNRAKRTILRDKEVAGASFKDLLSGLKSKSQQLKYEEAGERAARRMAEEEERDRVMQGRESGETRRRNRPAIQGIGEKGGGVIRISKMYGGESGRGRGSRRIGGYGGCDQQHG-RGAGEGAEFRRG---------DEQGMGRGVSRHRSPSQSSRPEKEAPSGTTMGESGSAPRQREESDEEGRRHWKRRCFRNEIDESEDDEARGESTEEVDDD 485
The following BLAST results are available for this feature:
BLAST of NO08G02400.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26663.15.700e-12959.44hypothetical protein Naga_100001g149 [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G02400NO08G02400Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G02400.1NO08G02400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G02400.1.cds1NO08G02400.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G02400.1.cds2NO08G02400.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G02400.1 ID=NO08G02400.1|Name=NO08G02400.1|organism=Nannochloropsis oceanica|type=mRNA|length=1636bp
ATCAGAAAAGCCAAATAACTCTACTCGACCCAAGGGATGCCGGATCAAGA
AGAAGGAGGGGACTATCGCGGCAGAGGGCACCGCCAGGGCAACCATCCAC
ATCATAATACCCGTGCACAAAAGCATGCCCGGCACCACAGCAACGGACAG
GATAGGCACGGAAGGGGCTCGCCGTCATCTTTATCCGTCTCGACTCACAT
GAGCGTGCACCCACTGCTCCGTCTGGCGGACCTAACCGAGAACCTGATGC
GGAAAGACGCTAGGGTGGGATACCCTTCAGCCGAACCGGAGGTCGAACCA
GAAAGTTTTGGGTGGCTTTTTTCAGCCCAGCAGATCTTGCTGGATCATGT
ACTGGGTGACGAGACACGGGTGGTTGTACAGCTGGGCGCCTACCTGGGCA
AGACGACGCTCTTCATTGCAGAGCACGCCCCGCGGGCCTTGATCTTTGTG
GTCGACCCCTGGGACAACGCCGTGCTCAAAACGGAGCCCTCACTCAACAA
GAACTTCGCCAACATCGACCTATTCGACCGTGTGCCCTTCTATCAGACAT
TCCTCCGCAATACCTGGCACCTGGCGGCGCGGCGTCGGCCTGACGAGGGA
GATCGGCTGGTGGGCGTGGTACCACTCCGTATGGGGTTCGACGAAGGGCT
GGCGCTGCTCAAGGCCGATCTGAGCCTGCGGCCAGATGTCTTGTACTGGG
AGGGCTTTCCCGATGAGGCGGGGCTGCTGCAGACGCTGGGAACCGTGAAG
GAAGCCTTCCCTGGTGTGGTAGTGGTGGGCGACGGCTACAACTACCCGGA
GGTGCAGGCAGGCTTGACTCGTGCCAGCAAAGACCTGTACCAAGACCGCA
AACCGTTTGTGGAGATGGGCAAGTGCTGGACTTATTTGCGCCTGAAGATG
GGCATGCTTTCAGAGCTGCGCGCGAAGTACACGGCCACGGACAACCGTGC
GGAGCGCACCGTGCTGGCAAGCAAGGAGGTCGCTGGCGCCTCCTTTAAGG
ACCTGCTCTCGGGCCTCAAGTCAAAGAGCCGTCAGCTCAAGGACGATGAG
GCAGAAGAGAGGGCGGCCAGACGTCGCGCAGAAGAAGAGGAGCGGGACCG
CACCCACCGGGAGCGGGAGGCGGAGGAGGAGGAGGAGCGGCAACGTCGTT
GGCAGGAGGGATATAAGGGAAGGGAGACGCCTCAAGAGGGAGAGGCGAGG
AAGGACAGCGCGCAGGAAGAGAAAGGGGGTATGGGGTGCCGCGAGTATCA
TGGTCGTAGACAAAGAGGGAGAGGTCGAGACAGAGGAGAGGGAAGGATTG
GATGGAGGGTTTGGGGGCAAGACTACGAAGGCGAAGGAAGGGGACGGCAT
GAGACTGCAGGTGGCGGTGGAAATGCGGTGGTGCCGAAAAGGCCGAGGCA
AGAGATGGAGGAAGACAGCGAACATAAAAGCCAACAGCGCTGGGATCGCA
ATCGCAGGCACGGGGAGGTTGACGAAAGTGAAGACGACGAGTGGACGAGC
CGAGCCTCGGGGGATGAGGAGGACGAGGGCGGCCGGGGTTGGGTGTAGAT
ATAGGCCTTTCCGCGGGTTACAAACAAAGCATGAGGCAAAACAAGAGTCC
CGAAAGGCGACGTCGTCTTTAGATATTTTCTTCTTC
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protein sequence of NO08G02400.1

>NO08G02400.1-protein ID=NO08G02400.1-protein|Name=NO08G02400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=504bp
MPDQEEGGDYRGRGHRQGNHPHHNTRAQKHARHHSNGQDRHGRGSPSSLS
VSTHMSVHPLLRLADLTENLMRKDARVGYPSAEPEVEPESFGWLFSAQQI
LLDHVLGDETRVVVQLGAYLGKTTLFIAEHAPRALIFVVDPWDNAVLKTE
PSLNKNFANIDLFDRVPFYQTFLRNTWHLAARRRPDEGDRLVGVVPLRMG
FDEGLALLKADLSLRPDVLYWEGFPDEAGLLQTLGTVKEAFPGVVVVGDG
YNYPEVQAGLTRASKDLYQDRKPFVEMGKCWTYLRLKMGMLSELRAKYTA
TDNRAERTVLASKEVAGASFKDLLSGLKSKSRQLKDDEAEERAARRRAEE
EERDRTHREREAEEEEERQRRWQEGYKGRETPQEGEARKDSAQEEKGGMG
CREYHGRRQRGRGRDRGEGRIGWRVWGQDYEGEGRGRHETAGGGGNAVVP
KRPRQEMEEDSEHKSQQRWDRNRRHGEVDESEDDEWTSRASGDEEDEGGR
GWV*
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mRNA from alignment at chr8:698078..700089-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G02400.1 ID=NO08G02400.1|Name=NO08G02400.1|organism=Nannochloropsis oceanica|type=mRNA|length=2012bp|location=Sequence derived from alignment at chr8:698078..700089- (Nannochloropsis oceanica)
ATCAGAAAAGCCAAATAACTCTACTCGACCCAAGGGATGCCGGATCAAGA
AGAAGGAGGGGACTATCGCGGCAGAGGGCACCGCCAGGGCAACCATCCAC
ATCATAATACCCGTGCACAAAAGCATGCCCGGCACCACAGCAACGGACAG
GATAGGCACGGAAGGGGCTCGCCGTCATCTTTATCCGTCTCGACTCACAT
GAGCGTGCACCCACTGCTCCGTCTGGCGGACCTAACCGAGAACCTGATGC
GGAAAGACGCTAGGGTGGGATACCCTTCAGCCGAACCGGAGGTCGAACCA
GAAAGGTGAGACGTAGAACATTTGTGGGTTGCGTGCATGGTTTTGGTGTG
TGAGAGGATTGGGAGACATATACTCATGCATCTTCTTTATAATCAATGGG
TTTATTGCCGACATGGAGTATCATTTTCTTTCTGTGGCGATGGCTCTTTC
TCACTTTCCTAAAGCTCACATAGGTGTCGCTTGCTGCCATGCGTCTTTAC
ACAATTTACACTCCTAAACCTCATTTTAGCCAGCGTAAAACATCACTGTC
GTATCGATCGACCAGCACAATTTTTACAAACATCCTGCTTGGATGAGGCT
CTTATGCCACATTCAAAAATTAAAAGTCAAGATAACCGACCCTTGTCTTC
ACCTCTCTTTCCCTCTTTGCCTTATCATAAGTTTTGGGTGGCTTTTTTCA
GCCCAGCAGATCTTGCTGGATCATGTACTGGGTGACGAGACACGGGTGGT
TGTACAGCTGGGCGCCTACCTGGGCAAGACGACGCTCTTCATTGCAGAGC
ACGCCCCGCGGGCCTTGATCTTTGTGGTCGACCCCTGGGACAACGCCGTG
CTCAAAACGGAGCCCTCACTCAACAAGAACTTCGCCAACATCGACCTATT
CGACCGTGTGCCCTTCTATCAGACATTCCTCCGCAATACCTGGCACCTGG
CGGCGCGGCGTCGGCCTGACGAGGGAGATCGGCTGGTGGGCGTGGTACCA
CTCCGTATGGGGTTCGACGAAGGGCTGGCGCTGCTCAAGGCCGATCTGAG
CCTGCGGCCAGATGTCTTGTACTGGGAGGGCTTTCCCGATGAGGCGGGGC
TGCTGCAGACGCTGGGAACCGTGAAGGAAGCCTTCCCTGGTGTGGTAGTG
GTGGGCGACGGCTACAACTACCCGGAGGTGCAGGCAGGCTTGACTCGTGC
CAGCAAAGACCTGTACCAAGACCGCAAACCGTTTGTGGAGATGGGCAAGT
GCTGGACTTATTTGCGCCTGAAGATGGGCATGCTTTCAGAGCTGCGCGCG
AAGTACACGGCCACGGACAACCGTGCGGAGCGCACCGTGCTGGCAAGCAA
GGAGGTCGCTGGCGCCTCCTTTAAGGACCTGCTCTCGGGCCTCAAGTCAA
AGAGCCGTCAGCTCAAGGACGATGAGGCAGAAGAGAGGGCGGCCAGACGT
CGCGCAGAAGAAGAGGAGCGGGACCGCACCCACCGGGAGCGGGAGGCGGA
GGAGGAGGAGGAGCGGCAACGTCGTTGGCAGGAGGGATATAAGGGAAGGG
AGACGCCTCAAGAGGGAGAGGCGAGGAAGGACAGCGCGCAGGAAGAGAAA
GGGGGTATGGGGTGCCGCGAGTATCATGGTCGTAGACAAAGAGGGAGAGG
TCGAGACAGAGGAGAGGGAAGGATTGGATGGAGGGTTTGGGGGCAAGACT
ACGAAGGCGAAGGAAGGGGACGGCATGAGACTGCAGGTGGCGGTGGAAAT
GCGGTGGTGCCGAAAAGGCCGAGGCAAGAGATGGAGGAAGACAGCGAACA
TAAAAGCCAACAGCGCTGGGATCGCAATCGCAGGCACGGGGAGGTTGACG
AAAGTGAAGACGACGAGTGGACGAGCCGAGCCTCGGGGGATGAGGAGGAC
GAGGGCGGCCGGGGTTGGGTGTAGATATAGGCCTTTCCGCGGGTTACAAA
CAAAGCATGAGGCAAAACAAGAGTCCCGAAAGGCGACGTCGTCTTTAGAT
ATTTTCTTCTTC
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Coding sequence (CDS) from alignment at chr8:698078..700089-

>NO08G02400.1 ID=NO08G02400.1|Name=NO08G02400.1|organism=Nannochloropsis oceanica|type=CDS|length=1512bp|location=Sequence derived from alignment at chr8:698078..700089- (Nannochloropsis oceanica)
ATGCCGGATCAAGAAGAAGGAGGGGACTATCGCGGCAGAGGGCACCGCCA
GGGCAACCATCCACATCATAATACCCGTGCACAAAAGCATGCCCGGCACC
ACAGCAACGGACAGGATAGGCACGGAAGGGGCTCGCCGTCATCTTTATCC
GTCTCGACTCACATGAGCGTGCACCCACTGCTCCGTCTGGCGGACCTAAC
CGAGAACCTGATGCGGAAAGACGCTAGGGTGGGATACCCTTCAGCCGAAC
CGGAGGTCGAACCAGAAAGTTTTGGGTGGCTTTTTTCAGCCCAGCAGATC
TTGCTGGATCATGTACTGGGTGACGAGACACGGGTGGTTGTACAGCTGGG
CGCCTACCTGGGCAAGACGACGCTCTTCATTGCAGAGCACGCCCCGCGGG
CCTTGATCTTTGTGGTCGACCCCTGGGACAACGCCGTGCTCAAAACGGAG
CCCTCACTCAACAAGAACTTCGCCAACATCGACCTATTCGACCGTGTGCC
CTTCTATCAGACATTCCTCCGCAATACCTGGCACCTGGCGGCGCGGCGTC
GGCCTGACGAGGGAGATCGGCTGGTGGGCGTGGTACCACTCCGTATGGGG
TTCGACGAAGGGCTGGCGCTGCTCAAGGCCGATCTGAGCCTGCGGCCAGA
TGTCTTGTACTGGGAGGGCTTTCCCGATGAGGCGGGGCTGCTGCAGACGC
TGGGAACCGTGAAGGAAGCCTTCCCTGGTGTGGTAGTGGTGGGCGACGGC
TACAACTACCCGGAGGTGCAGGCAGGCTTGACTCGTGCCAGCAAAGACCT
GTACCAAGACCGCAAACCGTTTGTGGAGATGGGCAAGTGCTGGACTTATT
TGCGCCTGAAGATGGGCATGCTTTCAGAGCTGCGCGCGAAGTACACGGCC
ACGGACAACCGTGCGGAGCGCACCGTGCTGGCAAGCAAGGAGGTCGCTGG
CGCCTCCTTTAAGGACCTGCTCTCGGGCCTCAAGTCAAAGAGCCGTCAGC
TCAAGGACGATGAGGCAGAAGAGAGGGCGGCCAGACGTCGCGCAGAAGAA
GAGGAGCGGGACCGCACCCACCGGGAGCGGGAGGCGGAGGAGGAGGAGGA
GCGGCAACGTCGTTGGCAGGAGGGATATAAGGGAAGGGAGACGCCTCAAG
AGGGAGAGGCGAGGAAGGACAGCGCGCAGGAAGAGAAAGGGGGTATGGGG
TGCCGCGAGTATCATGGTCGTAGACAAAGAGGGAGAGGTCGAGACAGAGG
AGAGGGAAGGATTGGATGGAGGGTTTGGGGGCAAGACTACGAAGGCGAAG
GAAGGGGACGGCATGAGACTGCAGGTGGCGGTGGAAATGCGGTGGTGCCG
AAAAGGCCGAGGCAAGAGATGGAGGAAGACAGCGAACATAAAAGCCAACA
GCGCTGGGATCGCAATCGCAGGCACGGGGAGGTTGACGAAAGTGAAGACG
ACGAGTGGACGAGCCGAGCCTCGGGGGATGAGGAGGACGAGGGCGGCCGG
GGTTGGGTGTAG
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Synonyms
Publications